CaUC02G030950 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G030950
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 5014828 .. 5015988 (+)
RNA-Seq ExpressionCaUC02G030950
SyntenyCaUC02G030950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAAAATTAAAATTAAAATTATATATCATATACAATTTATATTTAAACTTCAAAATCATTTTAAATAAAACCATACATATTTAACGCAAAAGAAAGGGAGTACATAGTGAAAATTGAATGTTAAAAGCGTAAATTTTGAAACCTAGCTAGTAACCAAATTAAAACAAAACTTAGATCTCTTTTAAGAGTAAATTGAAATTAAATTCAAGGACCACGTTCTATAAACAATAGAAATTAGATCCAAAAACTTTTTTTTTTTTTCTTTTTCCTTTCTAAAAGGACAATAATAGATATATAAGGTGGAAAATTTACCATGATTATGGCTTTGATATTGTCTGTAGTGAGCTTAAGAATTGATTGTGAAGCATCAAACTCATTGTTACTTGACTCATCAGCAAGGAATGCCATTAATTCATCAACCATATCTGAATCTTCTTCTTCATCATCTTCATTTTTTCCCTTTTTCTTCCTTTTCTTTTGTAAATGTTCATCAATTATGGTATTTATGAACACATCAAGATCTCTTCTAGCTTTTGCCATTCTTTCATTGAAATCTCGAGCATGAATCCATCCCAACCATGGCAAAAAATCTGCAATATTAAAAGCTCCAAACAGTTTAGAGAATTCTTGCAAGATGTTAACGAACTCATCTTGTCCATGGTGCGACCTCGATCCAAACGCGGCCTTGTAGGTTATGTTTCGTGTCAGGCTGAAAACTAGGTCACCGATATTCACCGGTTGCCCCATTTTACTTGAAACCATTCCGACTAGGGCGTCGACTTCGTCACGCACCGACGCCCATGACTCTGCGCGTCGGCGGCTGAAGAGCTTGATGACGCAAATCTTTCGCATTTGGCGCCAAAATGGGCCGTAGTTGGCAAAGGCCATATCGGCGCGATCGTAGGTGAGATATGTGATCGCAACGTTTGCAGGCCTATTTGCGAAGGCTACGTCTTGAACTTGGAGGAATTCTCGTGCCATATCTGGCGTGGAGACAACCACCATGTGGAGGACGCCGAGTCGGAGGTGGAAGAGGCCACCGTAGATGGCGGCGAGACGGGCGAGGCCACGGTGGGTGAGTTGGTCCATCATCAGCATGTTGCCGATGATGGGCAATCCACCGGGGCCAGGCGGGTAGCGAAATTTACGATGTAA

mRNA sequence

ATGAAGCTGAAAACTAGGTCACCGATATTCACCGGTTGCCCCATTTTACTTGAAACCATTCCGACTAGGGCGTCGACTTCGTCACGCACCGACGCCCATGACTCTGCGCGTCGGCGGCTGAAGAGCTTGATGACGCAAATCTTTCGCATTTGGCGCCAAAATGGGCCGCCTATTTGCGAAGGCTACGTCTTGAACTTGGAGGAATTCTCGTGCCATATCTGGCGTGGAGACAACCACCATGTGGAGGACGCCGAGTCGGAGGTGGAAGAGGCCACCGTAGATGGCGGCGAGACGGGCGAGGCCACGGTGGGTGAGTTGGTCCATCATCAGCATGTTGCCGATGATGGGCAATCCACCGGGGCCAGGCGGGTAGCGAAATTTACGATGTAA

Coding sequence (CDS)

ATGAAGCTGAAAACTAGGTCACCGATATTCACCGGTTGCCCCATTTTACTTGAAACCATTCCGACTAGGGCGTCGACTTCGTCACGCACCGACGCCCATGACTCTGCGCGTCGGCGGCTGAAGAGCTTGATGACGCAAATCTTTCGCATTTGGCGCCAAAATGGGCCGCCTATTTGCGAAGGCTACGTCTTGAACTTGGAGGAATTCTCGTGCCATATCTGGCGTGGAGACAACCACCATGTGGAGGACGCCGAGTCGGAGGTGGAAGAGGCCACCGTAGATGGCGGCGAGACGGGCGAGGCCACGGTGGGTGAGTTGGTCCATCATCAGCATGTTGCCGATGATGGGCAATCCACCGGGGCCAGGCGGGTAGCGAAATTTACGATGTAA

Protein sequence

MKLKTRSPIFTGCPILLETIPTRASTSSRTDAHDSARRRLKSLMTQIFRIWRQNGPPICEGYVLNLEEFSCHIWRGDNHHVEDAESEVEEATVDGGETGEATVGELVHHQHVADDGQSTGARRVAKFTM
Homology
[Close]
BLAST of CaUC02G030950 vs. NCBI nr
Match: ONK68022.1 (uncharacterized protein A4U43_C05F6370 [Asparagus officinalis])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-06
Identity = 50/129 (38.76%), Postives = 60/129 (46.51%), Query Frame = 0 

Query: 1   MKLKTRSPIFTGCPILLETIPTRASTSSRTDAHDSARR------RLKSLMTQIFRIWRQN 60
           ++L T SP+ TG        P R     R       RR        +SLMT         
Sbjct: 22  VRLNTSSPMLTG-------EPERRRQRRRWSRPRHGRRPRTGCGLRESLMTAELAHLAPE 81

Query: 61  GPPICEGYVLNLEEFSCHIWRGDNHHVEDAESEVEEATVDGGETGEATVGELVHHQHVAD 120
           G  + EG+V  +              VE+AE+EVEEA V  G+ GEA VGELVHH HVAD
Sbjct: 82  GAVVGEGHVAAVV------------GVEEAEAEVEEAPVPVGQAGEAPVGELVHHVHVAD 131

Query: 121 DGQSTGARR 124
           DGQ  GA R
Sbjct: 142 DGQRPGAWR 131

[Close]
BLAST of CaUC02G030950 vs. ExPASy TrEMBL
Match: A0A0A9R135 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 57  PICEGYVLNLEEFSCHIWRGDNHHVEDAESEVEEATVDGGETGEATVGELVHHQHVADDG 116
           P+ EG VL LE+ +  + RGD   VE AE+EVEEA V  G+  +A VG+LVHH+HVADD 
Sbjct: 232 PVGEGAVLRLEDLAGVLRRGDGERVEAAEAEVEEAAVLLGDRRQAAVGQLVHHRHVADDR 291

Query: 117 QSTGARR 124
           +   ARR
Sbjct: 292 KRLRARR 298

[Close]
BLAST of CaUC02G030950 vs. ExPASy TrEMBL
Match: A0A0A9JYK8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 1   MKLKTRSPIFTGCPILLETIPTRASTSSRTDAHDSARRRLKSLMTQIFRIWRQNGP 57
           ++LK  SP FT  P+   T  T A+ SSRT +H SARRRLKS +TQ FRIWRQ GP
Sbjct: 134 VRLKMSSPRFTASPLHRSTARTSAADSSRTASHVSARRRLKSFITQSFRIWRQKGP 189

[Close]
BLAST of CaUC02G030950 vs. ExPASy TrEMBL
Match: A0A5P1EPS6 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F6370 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 50/129 (38.76%), Postives = 60/129 (46.51%), Query Frame = 0 

Query: 1   MKLKTRSPIFTGCPILLETIPTRASTSSRTDAHDSARR------RLKSLMTQIFRIWRQN 60
           ++L T SP+ TG        P R     R       RR        +SLMT         
Sbjct: 22  VRLNTSSPMLTG-------EPERRRQRRRWSRPRHGRRPRTGCGLRESLMTAELAHLAPE 81

Query: 61  GPPICEGYVLNLEEFSCHIWRGDNHHVEDAESEVEEATVDGGETGEATVGELVHHQHVAD 120
           G  + EG+V  +              VE+AE+EVEEA V  G+ GEA VGELVHH HVAD
Sbjct: 82  GAVVGEGHVAAVV------------GVEEAEAEVEEAPVPVGQAGEAPVGELVHHVHVAD 131

Query: 121 DGQSTGARR 124
           DGQ  GA R
Sbjct: 142 DGQRPGAWR 131

The following BLAST results are available for this feature:
BLAST of CaUC02G030950 vs. NCBI nr
Match NameE-valueIdentityDescription
ONK68022.19.7e-0638.76uncharacterized protein A4U43_C05F6370 [Asparagus officinalis][more]
BLAST of CaUC02G030950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G030950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9R1358.5e-0853.73Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9JYK82.5e-0758.93Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A5P1EPS64.7e-0638.76Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F6370 PE=4 ... [more]
BLAST of CaUC02G030950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G030950.1CaUC02G030950.1mRNA