CaUC02G030870 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G030870
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein S31, mitochondrial
Location	Ciama_Chr02: 4935926 .. 4936192 (+)
RNA-Seq Expression	CaUC02G030870
Synteny	CaUC02G030870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCGCAGTGGTGCGGCGCTGTAGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCAATGGTGGTCGAAGGACTGGTGCCAATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTTATCTGA

mRNA sequence

ATGGCGATGGCGCAGTGGTGCGGCGCTGTAGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCAATGGTGGTCGAAGGACTGGTGCCAATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTTATCTGA

Coding sequence (CDS)

ATGGCGATGGCGCAGTGGTGCGGCGCTGTAGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCAATGGTGGTCGAAGGACTGGTGCCAATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTTATCTGA

Protein sequence

MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI

Homology

[Close]

BLAST of CaUC02G030870 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588415.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022258.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYK22378.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQWCGAVARGV+AAERRSPSLTSSM VEGLVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. NCBI nr
Match: XP_011658557.1 (30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQW GAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDK+TK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. NCBI nr
Match: XP_038888313.1 (30S ribosomal protein S31, mitochondrial [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 8.5e-38
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQ CGA+ARGVMAAERRSPSLTSSM  EGLVPILCGRGDKKTKKGKRFKGSYGNARP
Sbjct: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.2e-36
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 3  MAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          MAQWCGA+A+ VMAAERRSPSLTSSM VEGLVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of CaUC02G030870 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-25
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPI----------LCGRGDKKTKKGKR 60
          MA  QWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of CaUC02G030870 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-21
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GKRFKGSYGNARPK+EKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]

BLAST of CaUC02G030870 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 8.9e-06
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 13 GVMAAERRSPSLTSSMVVEGLVPIL-CGRGDKKTKKGKRFKGSYGNARPKKEKK 66
          GV  +   + SL+SS+     +P++ CGRGD+KT KGKRF  S+GNARPK + K
Sbjct: 28 GVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]

BLAST of CaUC02G030870 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.9e-05
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          + CGRGD+KT KGKRF  S+GNARP+ + K  R  +++ VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

[Close]

BLAST of CaUC02G030870 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.4e-39
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM QWCGAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQWCGAVARGV+AAERRSPSLTSSM VEGLVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQWCGAVARGV+AAERRSPSLTSSM VEGLVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. ExPASy TrEMBL
Match: A0A0A0K141 (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQW GAVARGVMAAERRSPSLTSSM VEGLVPILCGRGDK+TK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of CaUC02G030870 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.0e-37
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 3  MAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          MAQWCGA+A+ VMAAERRSPSLTSSM VEGLVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of CaUC02G030870 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 6.1e-26
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MAMAQWCGAVARGVMAAERRSPSLTSSMVVEGLVPI----------LCGRGDKKTKKGKR 60
          MA  QWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of CaUC02G030870 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-06
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          + CGRGD+KT KGKRF  S+GNARP+ + K  R  +++ VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

The following BLAST results are available for this feature:

BLAST of CaUC02G030870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933003.1	1.3e-38	96.59	30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30...	[more]
XP_008448047.1	2.2e-38	94.32	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1...	[more]
XP_011658557.1	3.8e-38	95.45	30S ribosomal protein S31, mitochondrial [Cucumis sativus]	[more]
XP_038888313.1	8.5e-38	95.45	30S ribosomal protein S31, mitochondrial [Benincasa hispida]	[more]
XP_022952601.1	1.2e-36	94.19	30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata]	[more]

BLAST of CaUC02G030870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJU8	8.6e-25	60.20	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g...	[more]
P47909	7.5e-21	84.91	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P47910	8.9e-06	50.00	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
O80439	9.9e-05	51.11	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]

BLAST of CaUC02G030870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3E9	6.4e-39	96.59	30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7SX60	1.1e-38	94.32	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BI88	1.1e-38	94.32	30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344...	[more]
A0A0A0K141	1.9e-38	95.45	30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006...	[more]
A0A6J1GKP4	6.0e-37	94.19	30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CaUC02G030870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21290.1	6.1e-26	60.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G38140.1	7.0e-06	51.11	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 33..80 e-value: 1.6E-11 score: 44.2
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 39..62 e-value: 1.3E-10 score: 39.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..67
None	No IPR available	PANTHER	PTHR34550:SF3	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..88
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G030870.1	CaUC02G030870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome