CaUC02G028390 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G028390
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protochlorophyllide reductase
Location	Ciama_Chr02: 2726120 .. 2726455 (+)
RNA-Seq Expression	CaUC02G028390
Synteny	CaUC02G028390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGTCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

mRNA sequence

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGTCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGTCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM

Homology

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BLAST of CaUC02G028390 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 5.9e-52
Identity = 107/112 (95.54%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GVGVAGVDGGGRVAAVVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMY G G  GVDGGGRVAAVVDG RREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

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BLAST of CaUC02G028390 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 6.5e-51
Identity = 105/111 (94.59%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRV AVVDG RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVGAVVDGDRREGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108

[Close]

BLAST of CaUC02G028390 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 106/112 (94.64%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAA-VVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRVAA VVDG RREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVAAVVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

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BLAST of CaUC02G028390 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 3.3e-47
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  G  G DGGGR   V+DG RR+GNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAG-GGADGGGR---VIDGNRRDGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CaUC02G028390 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 9.7e-47
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  G  G DGG   A V+DG RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAG-GGADGG---ATVIDGNRREGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 106/112 (94.64%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAA-VVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRVAA VVDG RREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVAAVVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

[Close]

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.7e-47
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  G  G DGG   A V+DG RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAG-GGADGG---ATVIDGNRREGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.5e-45
Identity = 97/107 (90.65%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAA-VVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRVAA VVDG RREGNSYGFSMI
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVAAVVVDGDRREGNSYGFSMI 100

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 107
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

[Close]

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 91/111 (81.98%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAA +RRNLHNIRKSPRVADESMYG G  G DGGG VA   +  RR GNSYGFSMIY
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGG--GGDGGGIVA---ERDRRGGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           S+LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  SVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

[Close]

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGG-RREGNSYGFSMI 60
           MWRLAAAVR  LHNIRKSPRVADESM+  G  GVDGGGR   VVDGG RRE NS+G S+I
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGG--GVDGGGR---VVDGGRRRERNSHGVSII 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           Y++LRTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  YNVLRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CaUC02G028390 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-25
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           M ++ + +RRNL N+RKSPRVAD++      +G   G     VV  GRR+    GF+ + 
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPG-----VVANGRRD----GFNSV- 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
            ++R PFSI+SCF+ P V+G DG+WVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  -IMRFPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of CaUC02G028390 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 7.5e-21
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADES-MYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMI 60
           M ++ + +RRNL N+RKSPRVADES +    V G  GGG            G++ G    
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDHGGG-----------NGSNGG---- 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
             +++ P SI+SCFS P V+  DG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  --IMKFPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of CaUC02G028390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888385.1	5.9e-52	95.54	uncharacterized protein LOC120078235 [Benincasa hispida]	[more]
XP_031744820.1	6.5e-51	94.59	uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica...	[more]
KAA0059153.1	5.5e-50	94.64	uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG6572248.1	3.3e-47	88.29	hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969305.1	9.7e-47	88.29	uncharacterized protein LOC111468352 [Cucurbita maxima]	[more]

BLAST of CaUC02G028390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G028390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTM8	2.7e-50	94.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1HZK3	4.7e-47	88.29	uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352...	[more]
A0A1S3C134	7.5e-45	90.65	uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=...	[more]
A0A6J1C6U0	1.7e-41	81.98	uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1ER34	1.5e-40	82.14	uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]

BLAST of CaUC02G028390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	6.5e-25	53.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G04795.1	7.5e-21	48.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G028390.1	CaUC02G028390.1	mRNA