CaUC02G027420 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G027420
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Geranylgeranyl transferase type-2 subunit beta
Location	Ciama_Chr02: 1776287 .. 1777090 (-)
RNA-Seq Expression	CaUC02G027420
Synteny	CaUC02G027420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGGGAAAATGGAGAATGGCAATAGAGGAAGGATTATCGGGAGAAGAAGAGAAAGAGGGAAAAATAAAATTAAGGGTAATTTTGTAACTTTGGCCGATAACAATGTAAGAGCAAAATTCTTAAGTTTCAAAGGGTGGGGCAAAAACTATTTATCTAGTATCCGTTCATTCATACTCTCAGATGGTAGACTGCTATCCATTTATTCTATGTATGCATCCCACCTTAAGTTGTTTTATGTACAGAGAAAGGATGATTTTCAATCTGTGATGATGGAACATATTAGAATGATTAGTGCATACTGGGGGTTAACCACACTGGATATTCTTGGAAAGCTAGATACTGTGGATATCGATGAAGTTGTTTCGTGGGTCTTGAAATGTCAGCATGAGTCAGGTTCTTAGCATTCTCTACTGTATCTACTTGTATGCCTTTTTTTCTATGTTAATATGGATACATTTTAGTTCGTTTGGAATAGATGTATGTGTTCACTGTTATGCCATTAGTCTTGCACATCATACACATCAAAGTAACAAAGCTGTTACAGACTCAAGTTGAACAAAATTTCCCTTTTCTGCATGTTTGAGGATTTAGATGTGAATGTTGGATCACTTATAACAAAAGCAGAGAAGTGATACCTGATATATGCAGGTGGTTTTTCTGGAAACATTGGACGTGATCCGCACATACTTTACACCCTTAGTGCTGTACAAGTCTTGGCCCTATTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTGTATCCTTTGGCATTTAGGAGTTGATTTTTAA

mRNA sequence

ATGGAGAAAGGGAAAATGGAGAATGGCAATAGAGGAAGGATTATCGGGAGAAGAAGAGAAAGAGGGAAAAATAAAATTAAGGGTAATTTTGTAACTTTGGCCGATAACAATGTAAGAGCAAAATTCTTAAGTTTCAAAGGGTGGGGCAAAAACTATTTATCTAGTATCCGTTCATTCATACTCTCAGATGGTAGACTGCTATCCATTTATTCTATGTATGCATCCCACCTTAAGTTGTTTTATGTACAGAGAAAGGATGATTTTCAATCTGTGATGATGGAACATATTAGAATGATTAGTGCATACTGGGGGTTAACCACACTGGATATTCTTGGAAAGCTAGATACTGTGGATATCGATGAAGTTGTTTCGTGGGTCTTGAAATGTCAGCATGAGTCAGGTGGTTTTTCTGGAAACATTGGACGTGATCCGCACATACTTTACACCCTTAGTGCTGTACAAGTCTTGGCCCTATTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTGTATCCTTTGGCATTTAGGAGTTGATTTTTAA

Coding sequence (CDS)

ATGGAGAAAGGGAAAATGGAGAATGGCAATAGAGGAAGGATTATCGGGAGAAGAAGAGAAAGAGGGAAAAATAAAATTAAGGGTAATTTTGTAACTTTGGCCGATAACAATGTAAGAGCAAAATTCTTAAGTTTCAAAGGGTGGGGCAAAAACTATTTATCTAGTATCCGTTCATTCATACTCTCAGATGGTAGACTGCTATCCATTTATTCTATGTATGCATCCCACCTTAAGTTGTTTTATGTACAGAGAAAGGATGATTTTCAATCTGTGATGATGGAACATATTAGAATGATTAGTGCATACTGGGGGTTAACCACACTGGATATTCTTGGAAAGCTAGATACTGTGGATATCGATGAAGTTGTTTCGTGGGTCTTGAAATGTCAGCATGAGTCAGGTGGTTTTTCTGGAAACATTGGACGTGATCCGCACATACTTTACACCCTTAGTGCTGTACAAGTCTTGGCCCTATTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTGTATCCTTTGGCATTTAGGAGTTGATTTTTAA

Protein sequence

MEKGKMENGNRGRIIGRRRERGKNKIKGNFVTLADNNVRAKFLSFKGWGKNYLSSIRSFILSDGRLLSIYSMYASHLKLFYVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCILWHLGVDF

Homology

[Close]

BLAST of CaUC02G027420 vs. NCBI nr
Match: XP_038887307.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887308.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887309.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-39
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           +RKDD QSVMMEHIRM  AYWGLTTLDILGKLDTVDI+EVVSWVLKCQHESGGFSGNIG 
Sbjct: 18  KRKDDLQSVMMEHIRMNGAYWGLTTLDILGKLDTVDINEVVSWVLKCQHESGGFSGNIGH 77

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCIL 176
           DPHILYTLSAVQVLALFDKL+V+DVDKVTD I+
Sbjct: 78  DPHILYTLSAVQVLALFDKLSVVDVDKVTDYIV 110

[Close]

BLAST of CaUC02G027420 vs. NCBI nr
Match: XP_022153059.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 9.4e-39
Identity = 79/96 (82.29%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 80  FYVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGN 139
           FY QRKDDFQSV+MEH+RM  AYWGLTTLDILGKL+TVD+DEVVSWV+ CQHESGGF+GN
Sbjct: 22  FYAQRKDDFQSVVMEHLRMNGAYWGLTTLDILGKLNTVDVDEVVSWVMSCQHESGGFAGN 81

Query: 140 IGRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCIL 176
           I  DPHILYTLSAVQVLALFDKL+VLDVDKVT+ ++
Sbjct: 82  IEHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVV 117

[Close]

BLAST of CaUC02G027420 vs. NCBI nr
Match: XP_022135990.1 (geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_022135991.1 geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-38
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           +RKDDFQSVMMEH+RM  AYWGLT LDILGKL+TVD+DEVVSWVLKCQH+SGGFSGNIG 
Sbjct: 18  KRKDDFQSVMMEHLRMNGAYWGLTALDILGKLNTVDVDEVVSWVLKCQHQSGGFSGNIGH 77

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           DPHILYTLSAVQVLALFD+L+VLDVDKVT+ I
Sbjct: 78  DPHILYTLSAVQVLALFDRLSVLDVDKVTNYI 109

[Close]

BLAST of CaUC02G027420 vs. NCBI nr
Match: KAF5178876.1 (Geranylgeranyl transferase type-2 subunit beta [Thalictrum thalictroides])

HSP 1 Score: 168.3 bits (425), Expect = 6.1e-38
Identity = 73/94 (77.66%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           ++KD F+SV MEH+RM  AYWGLTTLD+LGK++TVD DEV+SWV++CQHESGGF+GN+G 
Sbjct: 22  KKKDSFESVAMEHLRMNGAYWGLTTLDLLGKIETVDQDEVISWVMQCQHESGGFAGNVGH 81

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCILW 177
           DPHILYTLSAVQVLALFDKL+VLDVDK++DCILW
Sbjct: 82  DPHILYTLSAVQVLALFDKLDVLDVDKLSDCILW 115

[Close]

BLAST of CaUC02G027420 vs. NCBI nr
Match: XP_023889634.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Quercus suber])

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-37
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           +RKDDF SV+MEH+RM  AYWGLTTLD+L KLDTVD+DEVVSWV+KCQHESGGF GNIG 
Sbjct: 18  KRKDDFVSVVMEHLRMSGAYWGLTTLDLLEKLDTVDVDEVVSWVMKCQHESGGFGGNIGH 77

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           DPHILYTLSAVQVLALFDKLNVLD+DKVT+ +
Sbjct: 78  DPHILYTLSAVQVLALFDKLNVLDIDKVTNYV 109

[Close]

BLAST of CaUC02G027420 vs. ExPASy Swiss-Prot
Match: Q9LHL5 (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702 GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-33
Identity = 65/98 (66.33%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 77  LKLFYVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGF 136
           L L   ++K+ F+SV+M+H+RM  AYWGLTTL +L KL +V  DEVVSWV+ CQHESGGF
Sbjct: 15  LNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGF 74

Query: 137 SGNIGRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           +GN G DPH+LYTLSAVQ+LALFDKLN+LDV+KV++ I
Sbjct: 75  AGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYI 112

[Close]

BLAST of CaUC02G027420 vs. ExPASy Swiss-Prot
Match: Q84J75 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.0e-32
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           ++K+ F+SV+M+H+RM  AYWGLTTLD+L KL  V  +EV+SW++ CQHESGGF+GN G 
Sbjct: 26  KKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAGNTGH 85

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           DPHILYTLSAVQ+LALFDK+N+LD+ KV+  +
Sbjct: 86  DPHILYTLSAVQILALFDKINILDIGKVSSYV 117

[Close]

BLAST of CaUC02G027420 vs. ExPASy Swiss-Prot
Match: P53611 (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-25
Identity = 46/94 (48.94%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 81  YVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNI 140
           Y  +KDD++  M E++RM   YWGLT +D++G+L  ++ +E+++++  CQHE GG S +I
Sbjct: 30  YGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASI 89

Query: 141 GRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           G DPH+LYTLSAVQ+L L+D +NV+DV+KV + +
Sbjct: 90  GHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYV 123

[Close]

BLAST of CaUC02G027420 vs. ExPASy Swiss-Prot
Match: Q5E9B3 (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.1e-25
Identity = 45/94 (47.87%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 81  YVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNI 140
           Y  +KDD++  M E++RM   YWGLT +D++G+L  ++ +E+++++  CQHE GG S +I
Sbjct: 30  YGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASI 89

Query: 141 GRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           G DPH+LYTLSAVQ+L L+D +NV+D++KV + +
Sbjct: 90  GHDPHLLYTLSAVQILTLYDSINVIDINKVVEYV 123

[Close]

BLAST of CaUC02G027420 vs. ExPASy Swiss-Prot
Match: P53612 (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabggtb PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-24
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 81  YVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNI 140
           Y  +KDD++  M E++RM   YWGLT +D++G+L  ++ +E++ ++  CQHE GG S +I
Sbjct: 38  YGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASI 97

Query: 141 GRDPHILYTLSAVQVLALFDKLNVLDVDKV 171
           G DPH+LYTLSAVQ+L L+D ++V++VDKV
Sbjct: 98  GHDPHLLYTLSAVQILTLYDSVHVINVDKV 127

[Close]

BLAST of CaUC02G027420 vs. ExPASy TrEMBL
Match: A0A6J1DHW7 (Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN=LOC111020651 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 79/96 (82.29%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 80  FYVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGN 139
           FY QRKDDFQSV+MEH+RM  AYWGLTTLDILGKL+TVD+DEVVSWV+ CQHESGGF+GN
Sbjct: 22  FYAQRKDDFQSVVMEHLRMNGAYWGLTTLDILGKLNTVDVDEVVSWVMSCQHESGGFAGN 81

Query: 140 IGRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCIL 176
           I  DPHILYTLSAVQVLALFDKL+VLDVDKVT+ ++
Sbjct: 82  IEHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVV 117

[Close]

BLAST of CaUC02G027420 vs. ExPASy TrEMBL
Match: A0A6J1C294 (Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN=LOC111007801 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           +RKDDFQSVMMEH+RM  AYWGLT LDILGKL+TVD+DEVVSWVLKCQH+SGGFSGNIG 
Sbjct: 18  KRKDDFQSVMMEHLRMNGAYWGLTALDILGKLNTVDVDEVVSWVLKCQHQSGGFSGNIGH 77

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           DPHILYTLSAVQVLALFD+L+VLDVDKVT+ I
Sbjct: 78  DPHILYTLSAVQVLALFDRLSVLDVDKVTNYI 109

[Close]

BLAST of CaUC02G027420 vs. ExPASy TrEMBL
Match: A0A7J6V1L5 (Geranylgeranyl transferase type-2 subunit beta OS=Thalictrum thalictroides OX=46969 GN=FRX31_031536 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 73/94 (77.66%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           ++KD F+SV MEH+RM  AYWGLTTLD+LGK++TVD DEV+SWV++CQHESGGF+GN+G 
Sbjct: 22  KKKDSFESVAMEHLRMNGAYWGLTTLDLLGKIETVDQDEVISWVMQCQHESGGFAGNVGH 81

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCILW 177
           DPHILYTLSAVQVLALFDKL+VLDVDK++DCILW
Sbjct: 82  DPHILYTLSAVQVLALFDKLDVLDVDKLSDCILW 115

[Close]

BLAST of CaUC02G027420 vs. ExPASy TrEMBL
Match: A0A7N2MBX0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           +RKDDF SV+MEH+RM  AYWGLTTLD LGKLDTVD++EVVSWV+KCQH+SGGF GNIG 
Sbjct: 18  KRKDDFVSVVMEHLRMNGAYWGLTTLDFLGKLDTVDVEEVVSWVMKCQHQSGGFGGNIGH 77

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCILW 177
           DPH+LYTLSAVQVLALFDKLNVLD+DKVT+  +W
Sbjct: 78  DPHVLYTLSAVQVLALFDKLNVLDIDKVTNWDIW 111

[Close]

BLAST of CaUC02G027420 vs. ExPASy TrEMBL
Match: A0A6A4Q9B9 (Geranylgeranyl transferase type-2 subunit beta OS=Lupinus albus OX=3870 GN=Lalb_Chr07g0186751 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 75/93 (80.65%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           +RKDDF+SV+MEH+RM  AYWGLT LD++GKLDTVD+DEVVSWVL CQHESGGF GNIG 
Sbjct: 18  KRKDDFESVIMEHLRMNGAYWGLTALDLMGKLDTVDVDEVVSWVLSCQHESGGFGGNIGH 77

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCIL 176
           DPH+LYTLSAVQVLALFDKLNV+DVDKVT+ I+
Sbjct: 78  DPHLLYTLSAVQVLALFDKLNVIDVDKVTNYIV 110

[Close]

BLAST of CaUC02G027420 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-34
Identity = 65/98 (66.33%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 77  LKLFYVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGF 136
           L L   ++K+ F+SV+M+H+RM  AYWGLTTL +L KL +V  DEVVSWV+ CQHESGGF
Sbjct: 15  LNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGF 74

Query: 137 SGNIGRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           +GN G DPH+LYTLSAVQ+LALFDKLN+LDV+KV++ I
Sbjct: 75  AGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYI 112

[Close]

BLAST of CaUC02G027420 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-34
Identity = 65/98 (66.33%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 77  LKLFYVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGF 136
           L L   ++K+ F+SV+M+H+RM  AYWGLTTL +L KL +V  DEVVSWV+ CQHESGGF
Sbjct: 15  LNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGF 74

Query: 137 SGNIGRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           +GN G DPH+LYTLSAVQ+LALFDKLN+LDV+KV++ I
Sbjct: 75  AGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYI 112

[Close]

BLAST of CaUC02G027420 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-33
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 83  QRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSGNIGR 142
           ++K+ F+SV+M+H+RM  AYWGLTTLD+L KL  V  +EV+SW++ CQHESGGF+GN G 
Sbjct: 26  KKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAGNTGH 85

Query: 143 DPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           DPHILYTLSAVQ+LALFDK+N+LD+ KV+  +
Sbjct: 86  DPHILYTLSAVQILALFDKINILDIGKVSSYV 117

[Close]

BLAST of CaUC02G027420 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-33
Identity = 59/96 (61.46%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 79  LFYVQRKDDFQSVMMEHIRMISAYWGLTTLDILGKLDTVDIDEVVSWVLKCQHESGGFSG 138
           +   ++K+ F+SV+M+H+RM  AYWGLTTLD+L KL  V  +EV+SW++ CQHESGGF+G
Sbjct: 21  ILMAEKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAG 80

Query: 139 NIGRDPHILYTLSAVQVLALFDKLNVLDVDKVTDCI 175
           N G DPHILYTLSAVQ+LALFDK+N+LD+ KV+  +
Sbjct: 81  NTGHDPHILYTLSAVQILALFDKINILDIGKVSSYV 116

The following BLAST results are available for this feature:

BLAST of CaUC02G027420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887307.1	1.9e-39	89.25	geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hisp...	[more]
XP_022153059.1	9.4e-39	82.29	geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Momordica char...	[more]
XP_022135990.1	2.7e-38	85.87	geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_...	[more]
KAF5178876.1	6.1e-38	77.66	Geranylgeranyl transferase type-2 subunit beta [Thalictrum thalictroides]	[more]
XP_023889634.1	1.8e-37	82.61	geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Quercus suber]	[more]

BLAST of CaUC02G027420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHL5	2.1e-33	66.33	Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q84J75	4.0e-32	64.13	Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702...	[more]
P53611	4.7e-25	48.94	Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGT...	[more]
Q5E9B3	6.1e-25	47.87	Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB ...	[more]
P53612	6.8e-24	50.00	Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabgg...	[more]

BLAST of CaUC02G027420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHW7	4.5e-39	82.29	Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1C294	1.3e-38	85.87	Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN...	[more]
A0A7J6V1L5	2.9e-38	77.66	Geranylgeranyl transferase type-2 subunit beta OS=Thalictrum thalictroides OX=46...	[more]
A0A7N2MBX0	2.9e-38	79.79	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A6A4Q9B9	1.1e-37	80.65	Geranylgeranyl transferase type-2 subunit beta OS=Lupinus albus OX=3870 GN=Lalb_...	[more]

BLAST of CaUC02G027420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12070.1	1.5e-34	66.33	RAB geranylgeranyl transferase beta subunit 2	[more]
AT3G12070.2	1.5e-34	66.33	RAB geranylgeranyl transferase beta subunit 2	[more]
AT5G12210.1	2.8e-33	64.13	RAB geranylgeranyl transferase beta subunit 1	[more]
AT5G12210.2	2.8e-33	61.46	RAB geranylgeranyl transferase beta subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.50.10.20		coord: 73..177 e-value: 5.8E-25 score: 89.9
None	No IPR available	PANTHER	PTHR11774:SF13	GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA	coord: 79..174
IPR001330	PFTB repeat	PFAM	PF00432	Prenyltrans	coord: 118..158 e-value: 3.5E-11 score: 42.6
IPR045089	Prenyltransferase subunit beta	PANTHER	PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	coord: 79..174
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 82..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G027420.1	CaUC02G027420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0018344	protein geranylgeranylation
cellular_component	GO:0005968	Rab-protein geranylgeranyltransferase complex
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004663	Rab geranylgeranyltransferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0008318	protein prenyltransferase activity