CaUC02G026550 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G026550
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	Ciama_Chr02: 942371 .. 943117 (-)
RNA-Seq Expression	CaUC02G026550
Synteny	CaUC02G026550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGTACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK

Homology

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BLAST of CaUC02G026550 vs. NCBI nr
Match: KAG6382273.1 (hypothetical protein SASPL_158091 [Salvia splendens])

HSP 1 Score: 361.3 bits (926), Expect = 5.1e-96
Identity = 183/189 (96.83%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           MSPTLP+ICGSIDI SSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 1   MSPTLPIICGSIDI-SSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQL RAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR
Sbjct: 61  LGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSD 180

Query: 181 NLILRRRSK 190
           NLI+RRRSK
Sbjct: 181 NLIVRRRSK 188

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BLAST of CaUC02G026550 vs. NCBI nr
Match: KAG6383879.1 (hypothetical protein SASPL_156292 [Salvia splendens] >KAG6384642.1 hypothetical protein SASPL_155485 [Salvia splendens] >KAG6384694.1 hypothetical protein SASPL_155459 [Salvia splendens] >KAG6384699.1 hypothetical protein SASPL_155475 [Salvia splendens])

HSP 1 Score: 355.1 bits (910), Expect = 3.6e-94
Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           MSPTLP+ICGSIDI SSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 1   MSPTLPIICGSIDI-SSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQL RAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGR
Sbjct: 61  LGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGR 120

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSK WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 121 AGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSD 180

Query: 181 NLILRRRSK 190
           NLI+RRRSK
Sbjct: 181 NLIVRRRSK 188

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BLAST of CaUC02G026550 vs. NCBI nr
Match: WP_131792711.1 (50S ribosomal protein L2 [Candidatus Frankia datiscae])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 14  ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGA 73
           +SSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGA
Sbjct: 1   MSSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGA 60

Query: 74  VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVV 133
           VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVV
Sbjct: 61  VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVV 120

Query: 134 RGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 190
           RGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 121 RGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 176

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BLAST of CaUC02G026550 vs. NCBI nr
Match: YP_009758282.1 (ribosomal protein L2 [Rubus amabilis] >YP_009758306.1 ribosomal protein L2 [Rubus amabilis] >YP_010142841.1 ribosomal protein L2 [Rubus sachalinensis] >YP_010142865.1 ribosomal protein L2 [Rubus sachalinensis] >QIN90061.1 ribosomal protein L2 [Rubus amabilis] >QIN90086.1 ribosomal protein L2 [Rubus amabilis] >QQL03858.1 ribosomal protein L2 [Rubus sachalinensis] >QQL03883.1 ribosomal protein L2 [Rubus sachalinensis])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 178/189 (94.18%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           M   LP+   S +ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 124 MGNALPL---SAEISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLG+
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGK 243

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRRSK 190
           NLILRRRSK
Sbjct: 304 NLILRRRSK 309

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BLAST of CaUC02G026550 vs. NCBI nr
Match: YP_009715437.1 (ribosomal protein L2 [Colvillea racemosa] >YP_009715457.1 ribosomal protein L2 [Colvillea racemosa] >YP_009715752.1 ribosomal protein L2 [Zenia insignis] >YP_009715772.1 ribosomal protein L2 [Zenia insignis] >QGL08549.1 ribosomal protein L2 [Colvillea racemosa] >QGL08570.1 ribosomal protein L2 [Colvillea racemosa] >QGL08864.1 ribosomal protein L2 [Zenia insignis] >QGL08885.1 ribosomal protein L2 [Zenia insignis])

HSP 1 Score: 345.9 bits (886), Expect = 2.2e-91
Identity = 179/189 (94.71%), Postives = 180/189 (95.24%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           M   LP+   S  ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 124 MGNALPL---SAVISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 243

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRRSK 190
           NLILRRRSK
Sbjct: 304 NLILRRRSK 309

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BLAST of CaUC02G026550 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.6e-76
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 45  STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT 104
           STDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT
Sbjct: 131 STDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT 190

Query: 105 VGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 164
           VGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG
Sbjct: 191 VGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 250

Query: 165 YPALGRRSRKRNKYSDNLILRRRSK 190
           YPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 251 YPALGRRSRKRNKYSDNLILRRRSK 275

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BLAST of CaUC02G026550 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.1e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 46  TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 165
           GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY
Sbjct: 191 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRRSK 190
           PALGRRSRKRNKYSDNLILRRRSK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CaUC02G026550 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-75
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 46  TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 165
           GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY
Sbjct: 191 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRRSK 190
           PALGRRSRKRNKYSDNLILRRRSK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CaUC02G026550 vs. ExPASy Swiss-Prot
Match: A4GYV2 (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-75
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 46  TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 165
           GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY
Sbjct: 191 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRRSK 190
           PALGRRSRKRNKYSDNLILRRRSK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CaUC02G026550 vs. ExPASy Swiss-Prot
Match: B1A976 (50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.8e-75
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 46  TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 165
           GQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRRSK 190
           PALGRRSRKRNKYSDNLILRRRSK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CaUC02G026550 vs. ExPASy TrEMBL
Match: A0A7T7IE65 (Ribosomal protein L2 OS=Rubus sachalinensis OX=59502 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.3e-92
Identity = 178/189 (94.18%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           M   LP+   S +ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 124 MGNALPL---SAEISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLG+
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGK 243

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRRSK 190
           NLILRRRSK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of CaUC02G026550 vs. ExPASy TrEMBL
Match: A0A6G8QRU1 (50S ribosomal protein L2, chloroplastic OS=Rubus amabilis OX=616954 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.3e-92
Identity = 178/189 (94.18%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           M   LP+   S +ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 124 MGNALPL---SAEISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLG+
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGK 243

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRRSK 190
           NLILRRRSK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of CaUC02G026550 vs. ExPASy TrEMBL
Match: A0A7T7D7D8 (Ribosomal protein L2 OS=Ammopiptanthus nanus OX=111851 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.1e-91
Identity = 179/189 (94.71%), Postives = 180/189 (95.24%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           M   LP+   S  ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 124 MGNALPL---SAVISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 243

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRRSK 190
           NLILRRRSK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of CaUC02G026550 vs. ExPASy TrEMBL
Match: A0A649X4M7 (50S ribosomal protein L2, chloroplastic OS=Colvillea racemosa OX=191917 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.1e-91
Identity = 179/189 (94.71%), Postives = 180/189 (95.24%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           M   LP+   S  ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 124 MGNALPL---SAVISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 243

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRRSK 190
           NLILRRRSK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of CaUC02G026550 vs. ExPASy TrEMBL
Match: A0A649X5G9 (50S ribosomal protein L2, chloroplastic OS=Zenia insignis OX=162940 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.1e-91
Identity = 179/189 (94.71%), Postives = 180/189 (95.24%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60
           M   LP+   S  ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT
Sbjct: 124 MGNALPL---SAVISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 243

Query: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRRSK 190
           NLILRRRSK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of CaUC02G026550 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 273.5 bits (698), Expect = 1.3e-73
Identity = 137/144 (95.14%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 46  TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 165
           GQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRRSK 190
           PALGRR+RKR KYS+ LILRRRSK
Sbjct: 251 PALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CaUC02G026550 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 273.5 bits (698), Expect = 1.3e-73
Identity = 137/144 (95.14%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 46  TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 165
           GQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP TPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRRSK 190
           PALGRR+RKR KYS+ LILRRRSK
Sbjct: 251 PALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CaUC02G026550 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 48  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 107
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 108 QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 167
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 168 GYPALG 170
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CaUC02G026550 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 48  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 107
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 108 QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 167
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 168 GYPALG 170
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CaUC02G026550 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-16
Identity = 59/145 (40.69%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 48  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 107
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 108 GQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GRA 167
           GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG     G A
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGNHQHIGHA 227

Query: 168 PIGR--KKPATPWGYPALGRRSRKR 176
              R  K      G  A  R  R+R
Sbjct: 228 STVRRDKSAGAKVGQIAARRTGRRR 248

The following BLAST results are available for this feature:

BLAST of CaUC02G026550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6382273.1	5.1e-96	96.83	hypothetical protein SASPL_158091 [Salvia splendens]	[more]
KAG6383879.1	3.6e-94	95.77	hypothetical protein SASPL_156292 [Salvia splendens] >KAG6384642.1 hypothetical ...	[more]
WP_131792711.1	1.3e-91	99.43	50S ribosomal protein L2 [Candidatus Frankia datiscae]	[more]
YP_009758282.1	1.3e-91	94.18	ribosomal protein L2 [Rubus amabilis] >YP_009758306.1 ribosomal protein L2 [Rubu...	[more]
YP_009715437.1	2.2e-91	94.71	ribosomal protein L2 [Colvillea racemosa] >YP_009715457.1 ribosomal protein L2 [...	[more]

BLAST of CaUC02G026550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14F95	4.6e-76	99.31	50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=...	[more]
Q4VZK5	6.1e-76	100.00	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q14FB6	1.3e-75	99.31	50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=...	[more]
A4GYV2	1.3e-75	99.31	50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A...	[more]
B1A976	1.8e-75	99.31	50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 ...	[more]

BLAST of CaUC02G026550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T7IE65	6.3e-92	94.18	Ribosomal protein L2 OS=Rubus sachalinensis OX=59502 GN=rpl2 PE=4 SV=1	[more]
A0A6G8QRU1	6.3e-92	94.18	50S ribosomal protein L2, chloroplastic OS=Rubus amabilis OX=616954 GN=rpl2 PE=3...	[more]
A0A7T7D7D8	1.1e-91	94.71	Ribosomal protein L2 OS=Ammopiptanthus nanus OX=111851 GN=rpl2 PE=4 SV=1	[more]
A0A649X4M7	1.1e-91	94.71	50S ribosomal protein L2, chloroplastic OS=Colvillea racemosa OX=191917 GN=rpl2 ...	[more]
A0A649X5G9	1.1e-91	94.71	50S ribosomal protein L2, chloroplastic OS=Zenia insignis OX=162940 GN=rpl2 PE=3...	[more]

BLAST of CaUC02G026550 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	1.3e-73	95.14	ribosomal protein L2	[more]
ATCG01310.1	1.3e-73	95.14	ribosomal protein L2	[more]
AT2G44065.1	5.9e-26	48.41	Ribosomal protein L2 family	[more]
AT2G44065.2	5.9e-26	48.41	Ribosomal protein L2 family	[more]
AT3G51190.1	5.5e-16	40.69	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 47..166 e-value: 7.8E-67 score: 238.0
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 47..164 e-value: 2.3E-49 score: 166.7
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 110..188 e-value: 9.8E-35 score: 120.5
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAM	TIGR01171	TIGR01171	coord: 46..188 e-value: 1.0E-64 score: 216.5
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 24..109 e-value: 1.1E-30 score: 107.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..189
None	No IPR available	PANTHER	PTHR13691:SF5	39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL	coord: 18..186
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 18..186
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 131..142
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 47..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G026550.1	CaUC02G026550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding