CaUC02G026290 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G026290
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Coiled-coil domain-containing protein 18, putative isoform 2
Location	Ciama_Chr02: 638445 .. 639143 (+)
RNA-Seq Expression	CaUC02G026290
Synteny	CaUC02G026290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTCTAAAAATTAAAAAATAAATAAAAAATAAAACAGTTAGAAGCCATTTTCGACCCGTCGTTTCTAGAGCTGTGTGTTGGGACGACTTGTCGTAGAAGAAGTTTGAAGAAGAAGGATAAGGTTTGAAAGTTTGAAGGAATAATAATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGTAAGTCTAATCTCTATTTTTTGTTTTTTTCACTATTTGATTACTTGCTTTAAATTTTATTTTCTCTCGAGAGAAAAGGAAGAGATTTTGTTGAAGAAAAAGATTGAATTAGTGTTATAACTCATTATTAATTATTAGATTTTTCTGATGAATTTGGATAATTATTTCAGGAAGCAGCACTTTATGTGATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGTAAATATTAGCTAGAAATACAAATCTTTTTCTAATTACCAACTTATTCATGAATTAAATGGTCATGATATGATGTGGAAAATAATGCAGGGATTACAACCAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAGTCCACTTTTTTTTTTTTT

mRNA sequence

GTTTTTCTAAAAATTAAAAAATAAATAAAAAATAAAACAGTTAGAAGCCATTTTCGACCCGTCGTTTCTAGAGCTGTGTGTTGGGACGACTTGTCGTAGAAGAAGTTTGAAGAAGAAGGATAAGGTTTGAAAGTTTGAAGGAATAATAATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTACAACCAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAGTCCACTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTACAACCAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAG

Protein sequence

MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDKDSIMENWCHEEEVDELQPLYQLRDIVSAPF

Homology

[Close]

BLAST of CaUC02G026290 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI--E 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NTTTIEEAMKIFTEGL+PVECKAI  E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DKDSIM+NW H+EE+DELQP  QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of CaUC02G026290 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          MG+IDRKSSIENEPRTL+MHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI+DK
Sbjct: 1  MGNIDRKSSIENEPRTLRMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDK 60

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DSIM N+ HEEE DELQ LYQ RDIVSAPF
Sbjct: 61 DSIMGNYYHEEEDDELQSLYQPRDIVSAPF 90

[Close]

BLAST of CaUC02G026290 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 6.3e-36
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-ED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYV+NT TIEEAMKIFTEGLQPVECKAI ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIMENWCHEEEVDE-LQPLYQLRDIVSAPF 91
          KDSI++NW H+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of CaUC02G026290 vs. NCBI nr
Match: KAG6605318.1 (hypothetical protein SDJN03_02635, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035274.1 hypothetical protein SDJN02_02069 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.6 bits (379), Expect = 6.5e-33
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYVINT++IEEAM+IFTEGL+ VECKAIED+
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKAIEDR 60

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DS M+N CHEEEVDEL  LY+L DIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSLYRLPDIVSAPF 90

[Close]

BLAST of CaUC02G026290 vs. NCBI nr
Match: XP_022947894.1 (uncharacterized protein LOC111451648 [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYVINT++IEEAM+IFTEGL+ VECK IED+
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DS M+N CHEEEVDEL   Y+L DIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of CaUC02G026290 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI--E 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NTTTIEEAMKIFTEGL+PVECKAI  E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DKDSIM+NW H+EE+DELQP  QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of CaUC02G026290 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-36
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-ED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYV+NT TIEEAMKIFTEGLQPVECKAI ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIMENWCHEEEVDE-LQPLYQLRDIVSAPF 91
          KDSI++NW H+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of CaUC02G026290 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYVINT++IEEAM+IFTEGL+ VECK IED+
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DS M+N CHEEEVDEL   Y+L DIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of CaUC02G026290 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          MG IDRKSSIENEPRTLKMHQIQFAREAALY++NTTTI+EAM+IFTEGL+ VECKA  D+
Sbjct: 6  MGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDR 65

Query: 61 --DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
            +   +   +EEE+ +L+PLY+ RDIVSAPF
Sbjct: 66 NINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

[Close]

BLAST of CaUC02G026290 vs. ExPASy TrEMBL
Match: A0A1R3GDT9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 3   SIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDKDS 62
           +IDRKSSIE+EPRTL  HQIQ AREAA+YV++T +IEEAM IFTEGL+PV   A  D   
Sbjct: 12  NIDRKSSIESEPRTLSFHQIQCAREAAMYVVSTRSIEEAMSIFTEGLEPVVSGARADNIG 71

Query: 63  IMENWCHEE----EVDELQPLYQLRDIVSAPF 91
                  +E    E++E Q L++ RD+VSAPF
Sbjct: 72  TNTMMDSKEMQFLELEEFQQLHEFRDVVSAPF 103

[Close]

BLAST of CaUC02G026290 vs. TAIR 10
Match: AT4G33467.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
           M  ++R+SSIE EP TL + Q++ ARE ALYV+ T T+EEAM IFT+       +A E++
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  DSIMENWCHEEEVDELQPLYQL------RDIVSAPF 91
                N   EE+ D+ +    +       DI +APF
Sbjct: 67  GGRCINLKDEEDDDDYEDERMMFMSPHAWDIHTAPF 102

[Close]

BLAST of CaUC02G026290 vs. TAIR 10
Match: AT4G33467.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFT----EGLQPVE--- 60
           M  ++R+SSIE EP TL + Q++ ARE ALYV+ T T+EEAM IFT    EGL+  E   
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRASEERG 66

Query: 61  CKAIEDKDSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
            + I  KD   ++   +E +  + P     DI +APF
Sbjct: 67  GRCINLKDEEDDDDYEDERMMFMSP--HAWDIHTAPF 101

The following BLAST results are available for this feature:

BLAST of CaUC02G026290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460897.1	4.8e-36	88.04	PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]	[more]
XP_038902606.1	4.8e-36	90.00	uncharacterized protein LOC120089256 [Benincasa hispida]	[more]
XP_011649401.1	6.3e-36	89.13	uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical ...	[more]
KAG6605318.1	6.5e-33	83.33	hypothetical protein SDJN03_02635, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022947894.1	7.2e-32	81.11	uncharacterized protein LOC111451648 [Cucurbita moschata]	[more]

BLAST of CaUC02G026290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G026290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDH2	2.3e-36	88.04	uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=...	[more]
A0A0A0LQ89	3.0e-36	89.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1	[more]
A0A6J1G887	3.5e-32	81.11	uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC1114516...	[more]
A0A6J1DBC1	3.4e-27	70.65	uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1R3GDT9	1.2e-16	56.52	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1	[more]

BLAST of CaUC02G026290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33467.1	1.1e-09	39.58	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]
AT4G33467.2	2.4e-09	42.27	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808:SF2	EXPRESSED PROTEIN	coord: 3..90
None	No IPR available	PANTHER	PTHR34808	EXPRESSED PROTEIN	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G026290.1	CaUC02G026290.1	mRNA