CaUC02G025790 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G025790
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Ribosome-binding factor PSRP1
Location	Ciama_Chr02: 27049 .. 31770 (+)
RNA-Seq Expression	CaUC02G025790
Synteny	CaUC02G025790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATGGCCACTCTCACCTCTTCCATGCAGGCCAATCTCCTTTCCTATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGGTATTTCATTTAGCTTCATCTTTGCTATTGTTTCTCATGCAATGCGACTTCTTCTTTTCACTATCTTGAATTGTTAATTCTTCCCATGTTTGATTCAGTAATTACTATCAAATGAATCCACATAACCTCTACCTTTTTCGTACCCCATTCTCTATGCTATTCCAATCACCATATCCCTTTACTCAAACCCTACCCTTGTATTTGCTGACTTCTCCATTTCCACTACATTTAGTTTACAAACCCTAAACTCTGCCTCATTTCTTTAAATATTGTCCGTATCAACATTCGTGGCCCTTCTCCATTCTTCTTTTTACTCTGCACACCTCTTTGAAGTGAACGCATCGCATAAGGAATTCACTATCATTTTCAAAAACTCCTCCCTCTATCTCCTAATCTCTCAGCGAATTTTGATATTGATATTCTATATCTTCGCTTATTGCAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGTGCATTCACTCTCTTCAATATCAGCATCTAAACCAAATTTATTCTTCTCTACATTCTCATCAAACACAACCATTTTTCCTTCATAATCATTCCATTCCAGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATACAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACACATCAAAAGCAGTCAACACATGTAATAAAAGACTGCTGCCTCTAAATTAAATTGAAGTTGGCCCTATGTAAGACACCTAGTTATGGAAATATTAGAGTTATTAGTATGGTTATTAGAAGGGGCATATTAGTAATCAGTTAGTAAGTTTGTTAGAGCTTTTAGTTATAATAGAGAGAGTTGGTTGGGAGCAAGATGTGGATCATTTTGGTAGTAATTTCCATTGTGGGAATTTAAGTGGGTGTAGCCCTCTCGAAAGGAAAGGCTATGATATTGTAGTTTCTTCATTCATCTTGCAATATAATTCTATCTTTTTGTGTTTGTTGTTCTTCAATGTTCGTGTTAGCTGATAACCCAACTACACCCTAATCTAGATGATGCGGATTTGACACCAAATATTAGGAATAAGCTCTTCAAAGAAATAAAAGCGGGAGAAATATACTGTTAAAAACATGCTGGAAATGATAACAAAGTTTAATAAGGTGGTCATCATACTGAACTTACCTACTAGATGCAGATAAAGAAATTACCTACTAACACTTATAAACAAGCTACCTTAGTTGTAGAAACTCTGCTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAACATGTACTTCTAGAAGTTGTCCGAGTTTCAGTTACCCAATTTATGGTATCTCAATGTTTCAAATGTCAAACATTGAGTGGATTGAGGGTTTTGACTTTAGTTTGGGAGAAGGGATGTTTGTGTTTGGAGTCCTAACCCATTGGAGGGTTTCTCTTGTACGTTGTTCTTTAGGATTTTATTGGATCCTTCTCTTGTTGTTGAGTCGGTCTTTGATGTTTTATGGAGGATTAAGATTCCAAAGAAAGTTAAGTTCTTTTCCTAGCAAGTTTTGCTTGGTCGTGTGAATACGATGGATACGATTTTGAGAAAGATGTCTTCGTTAATGGGTCTATTTTGTTGTATTTTTTGTCGGAAGATGGAGGAAACCTAGATCACCTTCTTTGGAGTGTCAGTTTGCGAGATCTGTTTGGAACGGTTTCTTGCAAGAGTTTGATTTTAATCTTGCTCACCGGTTGATAATCGGGGAGTTCCTTCTCCATCCGTCTTTCAAAGAGAAAGGTCATTTTCTTTGATTTGTGGGGGTGTGTGTTTTGTGGGATCTTTGGGAGGAGAGAAACAATAGAGTGTTTCGGGGTGTGGGAGGGACCCTAGCAAGGTTTGGTCTTTATTGAGGTTTCATGTTTCTCTTTGGGCTTCGGTTTTGAAGGCTTTTTGTTATCACTCTCTAGTCAATATCTTACCTAGATGGAAACACTTTCTTTAGTTGGAGATTTTTTTCTTTTGTGAGTTTTCTTTTTTTGTATGCCCTTGTATTCTTTCCTTTTTTTCCTCAATGAAAATAGTTGTTTCTGTATTTTTTTAAAAAAAATACAAAAATACAAAAATACAAAAATACAAAAATAAAAATAAAATAAAATAAAGAAAAAACATTGAGTTGATTTATGTTTAATTGTGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTACTCTATTGCTCCTTTATTTTAAATTTATCCATATGAATTGAACCCTCATTCTTTTCCAAAAACATTTGTGTTTATATAGGTTACCTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTTATTCTTCCAACCTTTGGGTTTTTACTTTGAGTTCATTTAAGGTGATATTAGCTTATAAAAGCTCATGTATGCCATGCCTTATGCCATGCCTGTTAATTATTTTCTACATGTTGAAGCTTATTATGAAACTTACTAAACCACATCTTTCCTCACTTAGTTATTGAAAACATTGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCATCAATTAGTAGTGGGAAAACTCCAGATGCAGTACTCAGATTAGTTGAACCATGTGCAATAAGTTACTCCTCGCATAGGTGGGAAGAACGGAAAGAAATGCATTCTCAATCTTGATTACCCCCCTCTGATGTGCTATTTTCAACTGAGTTCAGCTCAAAGTCCTATTTTTATTTACATTATAGGATTAATAAGTCAGTTCTTTTATTTCACAACATGACATCTTAGATAAACATGAAAAAATCGGAAGTTGGACCTGACAACTGTAAGATAGAGGGCCTCCATAGTTTGTAGGAGTCTGTTATCTGTTATTTCTCACAGAGCTAACATTGTGTTGACTGTTATTTTATTGATCCTTTGCTCCTCATGAGTGTTTTGTGGTCCATTCCAATGTACTTGATCGTTATAGCTTTTGATTTACTTGCTGCTTATTTTGTTTACATTCAATTTTGGTTGGAAGGACTTATGATATTCGTCCTTTTTAGATAACGATCATGTATCATATTCTGGAAGCTCGTGAATGATATGTACACATGATTAAAATATTAATTTTTCCTTTTCATGCTAGCAATTTTCTATTTTGGTATCTCATTGCTCATTTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCGTTGATTTGATTATTATGATGATCTTGTTTTGTTGGGATTCTTTGCTGTTTATATGGTAGCTTATTGTCTGAATCTTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAAACTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAAACTGCAAAACTTCGACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTAGATTTGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAAGTAAAATGAGATGCAAAAAATGTTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCAGTTCTGTTTATATTGTTGGTAGTTGAATATTGATTCGTCTTTCTTCCTTTCCTAAAGAATCCCCCGGTCGCCACATTTTTACTTTATTCATATGTGACATGAATATTCCTTGTCCCTACAACATTGATTAATGCAATAAAAATAGATAACTAGAAGTAATTGTTGTTCCATGATGAGGTTGGATAAGAATTAGCATGGGAGTCCAC

mRNA sequence

ATGGTAATGGCCACTCTCACCTCTTCCATGCAGGCCAATCTCCTTTCCTATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATACAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACACATCAAAAGCAGTCAACACATAAGGGGCATATTAGTAATCATTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACCTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAAACTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAAACTGCAAAACTTCGACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTAGATTTGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAAGTAAAATGAGATGCAAAAAATGTTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCAGTTCTGTTTATATTGTTGGTAGTTGAATATTGATTCGTCTTTCTTCCTTTCCTAAAGAATCCCCCGGTCGCCACATTTTTACTTTATTCATATGTGACATGAATATTCCTTGTCCCTACAACATTGATTAATGCAATAAAAATAGATAACTAGAAGTAATTGTTGTTCCATGATGAGGTTGGATAAGAATTAGCATGGGAGTCCAC

Coding sequence (CDS)

ATGGTAATGGCCACTCTCACCTCTTCCATGCAGGCCAATCTCCTTTCCTATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATACAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACACATCAAAAGCAGTCAACACATAAGGGGCATATTAGTAATCATTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACCTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAAACTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

Protein sequence

MVMATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSSQHIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLETVTVEAAREPSLAE

Homology

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BLAST of CaUC02G025790 vs. NCBI nr
Match: XP_004147328.1 (ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hypothetical protein Csa_016934 [Cucumis sativus])

HSP 1 Score: 498.4 bits (1282), Expect = 5.6e-137
Identity = 283/393 (72.01%), Postives = 296/393 (75.32%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSA 62
           MATLTSSMQANLLS HSL       S    SSS++S+FPASFSLHFSALKVHALSSN SA
Sbjct: 1   MATLTSSMQANLLSDHSL-------SPPFHSSSTVSYFPASFSLHFSALKVHALSSNASA 60

Query: 63  FFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKR 122
           FFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKLIVQGKNLEL +          
Sbjct: 61  FFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEA--------- 120

Query: 123 TMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSSQH 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 IRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHG 242
                  +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHG
Sbjct: 181 -------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHG 240

Query: 243 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEE 302
           VVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDR KVREPAPIVVEDEE
Sbjct: 241 VVRAEEDAETVFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEE 300

Query: 303 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 362
           EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK
Sbjct: 301 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 310

Query: 363 DGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           DGGYGLIIPKENG AEKLE VT+EA REPSLAE
Sbjct: 361 DGGYGLIIPKENGTAEKLEPVTIEATREPSLAE 310

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BLAST of CaUC02G025790 vs. NCBI nr
Match: XP_008460813.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023.1 ribosome-binding factor PSRP1 [Cucumis melo var. makuwa])

HSP 1 Score: 497.7 bits (1280), Expect = 9.5e-137
Identity = 283/393 (72.01%), Postives = 295/393 (75.06%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSA 62
           MATLTSSMQANLLS HSL            SSS++S+FPA FSLHFSALKVHALSSN SA
Sbjct: 1   MATLTSSMQANLLSDHSL-------PPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASA 60

Query: 63  FFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKR 122
           FFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLEL +          
Sbjct: 61  FFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEA--------- 120

Query: 123 TMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSSQH 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 IRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHG 242
                  +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHG
Sbjct: 181 -------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHG 240

Query: 243 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEE 302
           VVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDR KVREPAPIVVEDEE
Sbjct: 241 VVRAEEDAETVFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEE 300

Query: 303 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 362
           EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK
Sbjct: 301 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 310

Query: 363 DGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           DGGYGLIIPKENG AEKLE VTVEAAREPSLAE
Sbjct: 361 DGGYGLIIPKENGTAEKLEPVTVEAAREPSLAE 310

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BLAST of CaUC02G025790 vs. NCBI nr
Match: XP_038900446.1 (ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 483.4 bits (1243), Expect = 1.8e-132
Identity = 282/395 (71.39%), Postives = 294/395 (74.43%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSLHFSALKVHAL--SSNT 62
           MA LTSSM  +LL  HSL      SSSSSSSSS+ISFFPASFSLHFSALKVHAL  SS  
Sbjct: 1   MAALTSSMHTSLLPDHSL------SSSSSSSSSTISFFPASFSLHFSALKVHALSCSSTA 60

Query: 63  SAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESG 122
           SAFFNSCKSF T ET SR+RHASNSFNVRMSWDG LSSVKLIVQ KNLEL +        
Sbjct: 61  SAFFNSCKSFRTFETASRNRHASNSFNVRMSWDGPLSSVKLIVQAKNLELTEA------- 120

Query: 123 KRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSS 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 QHIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 242
                    +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK
Sbjct: 181 ---------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 240

Query: 243 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVED 302
           HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDR KVREPAPIVVED
Sbjct: 241 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVED 300

Query: 303 EEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYK 362
           E+EEVF+ED GEVIDEIVR KYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILYK
Sbjct: 301 EDEEVFEED-GEVIDEIVRRKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILYK 312

Query: 363 RKDGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           RKDGGYGLIIPKENG+AEKLE+VT++AAREPSLAE
Sbjct: 361 RKDGGYGLIIPKENGRAEKLESVTIDAAREPSLAE 312

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BLAST of CaUC02G025790 vs. NCBI nr
Match: KAG7014676.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 458.0 bits (1177), Expect = 8.3e-125
Identity = 271/398 (68.09%), Postives = 287/398 (72.11%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSS 62
           MA LTSSMQ NLLS HSL+ S SSSSSSSSSSS++S FP SFSL    + + LK HALSS
Sbjct: 1   MAALTSSMQTNLLSAHSLTPS-SSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSS 60

Query: 63  NTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVK 122
           + SAFFNSC   F TI    R RHA+ SF++RMSWDG LSSVKLIVQGKNLEL +     
Sbjct: 61  HASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEA---- 120

Query: 123 ESGKRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHI 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 KSSQHIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 242
                       +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF
Sbjct: 181 ------------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 240

Query: 243 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIV 302
           TKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDR K+R+PAPIV
Sbjct: 241 TKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIV 300

Query: 303 VEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI 362
           VEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI
Sbjct: 301 VEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI 321

Query: 363 LYKRKDGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           LYKRKDGGYGLIIPKE+G AEK+ETVTVE ARE SLAE
Sbjct: 361 LYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 321

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BLAST of CaUC02G025790 vs. NCBI nr
Match: KAG6576623.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 454.5 bits (1168), Expect = 9.2e-124
Identity = 270/398 (67.84%), Postives = 285/398 (71.61%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASF----SLHFSALKVHALSS 62
           MA LTSSMQ NLLS HSL+ S SSSSSSSSSSS++S FP SF    S + + LK HALSS
Sbjct: 1   MAALTSSMQTNLLSTHSLTPS-SSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSS 60

Query: 63  NTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVK 122
           + SAFFNSC   F TI    R RHA+ SF++RMSWDG LSSVKLIVQGKNLEL +     
Sbjct: 61  HASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEA---- 120

Query: 123 ESGKRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHI 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 KSSQHIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 242
                       +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF
Sbjct: 181 ------------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 240

Query: 243 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIV 302
           TKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDR K+REPAPIV
Sbjct: 241 TKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIV 300

Query: 303 VEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI 362
           VEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI
Sbjct: 301 VEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI 321

Query: 363 LYKRKDGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           LYKRKDGGYGLIIPKE+G AEK+ETVTV  ARE SLAE
Sbjct: 361 LYKRKDGGYGLIIPKEDGNAEKIETVTVGVAREASLAE 321

[Close]

BLAST of CaUC02G025790 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 5.1e-77
Identity = 192/405 (47.41%), Postives = 240/405 (59.26%), Query Frame = 0


Query: 3   MATL-TSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATL TS++  N    +SLS+S + SS+ ++                       LSS  S
Sbjct: 1   MATLCTSAINMNPNLTNSLSNSINLSSTPTN-----------------------LSSLRS 60

Query: 63  AFFNSCKSFG---TIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKE 122
            F NSC S G    +++   SR+  N   V MSWDG LSSVKLI+QG+NLE+ D      
Sbjct: 61  TFTNSC-SLGLNVAVKSVQISRNKPNV--VCMSWDGPLSSVKLILQGRNLEVSD------ 120

Query: 123 SGKRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIK 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 SSQHIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 242
                      ++ HVE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFT
Sbjct: 181 ----------NVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFT 240

Query: 243 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVV 302
           K+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SD GRHMKGF+R KVR+P P+ +
Sbjct: 241 KRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRI 300

Query: 303 EDEE--EEV------FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNE 362
             EE  EEV         +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNE
Sbjct: 301 TREEVLEEVESAPAPVSVEDDDFIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNE 302

Query: 363 ETGEINILYKRKDGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           ETG+INILYKRK+GGYGLIIPK+ GK EKLE++ V+  ++PS AE
Sbjct: 361 ETGDINILYKRKEGGYGLIIPKD-GKTEKLESLPVQTDKQPSFAE 302

[Close]

BLAST of CaUC02G025790 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-29
Identity = 82/189 (43.39%), Postives = 118/189 (62.43%), Query Frame = 0


Query: 190 IKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRA 249
           I  +VEEKV +AV+   +L  +VDV LSV      +  RI    + EVT++     V+RA
Sbjct: 16  IHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHKAEVTVYA-NGTVIRA 75

Query: 250 EEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDE--EEE 309
           +E +E +YASIDLV+  I R+LRK KE+  D     K    +K  E    +VED+  EE 
Sbjct: 76  QEGSENLYASIDLVADKIARQLRKYKERIQD-----KQHGNVKTSE----IVEDKPVEEN 135

Query: 310 VFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDG 369
           +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++T EIN++Y R  G
Sbjct: 136 LIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKDTDEINVIYIRNHG 189

Query: 370 GYGLIIPKE 374
           GYG+I P +
Sbjct: 196 GYGVIQPHQ 189

[Close]

BLAST of CaUC02G025790 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-26
Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 190 IKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED 249
           I  +VE K+ KA +       +VDV LSV      +     + EVT++     V+RA+E 
Sbjct: 16  IHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEVTVYA-NGTVIRAQEG 75

Query: 250 AETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDE-EEEVFQE 309
           +E +YASIDLVS  I R+LRK KEK+  +  H++        + + ++ ED   + +  +
Sbjct: 76  SENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQ-------EKTSEVLPEDPVPDNLIGD 135

Query: 310 DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 369
              E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T  IN++Y R  GGYG+
Sbjct: 136 RAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTNAINVIYIRNHGGYGV 189

Query: 370 IIPK 373
           I P+
Sbjct: 196 IQPR 189

[Close]

BLAST of CaUC02G025790 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-16
Identity = 59/185 (31.89%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 190 IKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED 249
           ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L     G++RAEE 
Sbjct: 17  MREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-NVPGGIIRAEEH 76

Query: 250 AETVYASIDLVSSIIQRKLRK-----IKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEE 309
              +YA+ID  S +++R+LRK     +K++   R   + G        PA   V  +   
Sbjct: 77  HADMYAAIDKASDVLERQLRKFKTRYMKQRQEGRPEPLPG--------PAEAEVNAQGSG 136

Query: 310 VFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDG 369
              +D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+  ++Y+R+DG
Sbjct: 137 AAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQTGVVYRRRDG 188

[Close]

BLAST of CaUC02G025790 vs. ExPASy Swiss-Prot
Match: Q49VV1 (Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=hpf PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.9e-16
Identity = 61/183 (33.33%), Postives = 104/183 (56.83%), Query Frame = 0


Query: 190 IKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED 249
           I+ ++EEK+GK ++++ + V      + V+  +        + EVT+  KK   +RAEE 
Sbjct: 17  IRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQ----NSATKIEVTIPLKK-VTLRAEER 76

Query: 250 AETVYASIDLVSSIIQRKLRKIKEKDSDRGRH---MKGFDRLKVREPAPIVVEDEEEEVF 309
            + +YA IDL+++ ++R++RK K + + R R+    + F  L   E   + ++++E E  
Sbjct: 77  NDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLP-EEKEAVEIQNDENEAD 136

Query: 310 QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGY 369
            E       EI+R K F + P+  EEA+ Q+  + HDF+ F + ET   +I+YKRKDG Y
Sbjct: 137 NE------IEIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRETDGTSIVYKRKDGKY 186

[Close]

BLAST of CaUC02G025790 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 4.6e-137
Identity = 283/393 (72.01%), Postives = 295/393 (75.06%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSA 62
           MATLTSSMQANLLS HSL            SSS++S+FPA FSLHFSALKVHALSSN SA
Sbjct: 1   MATLTSSMQANLLSDHSL-------PPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASA 60

Query: 63  FFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKR 122
           FFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLEL +          
Sbjct: 61  FFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEA--------- 120

Query: 123 TMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSSQH 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 IRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHG 242
                  +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHG
Sbjct: 181 -------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHG 240

Query: 243 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEE 302
           VVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDR KVREPAPIVVEDEE
Sbjct: 241 VVRAEEDAETVFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEE 300

Query: 303 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 362
           EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK
Sbjct: 301 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 310

Query: 363 DGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           DGGYGLIIPKENG AEKLE VTVEAAREPSLAE
Sbjct: 361 DGGYGLIIPKENGTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of CaUC02G025790 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 4.6e-137
Identity = 283/393 (72.01%), Postives = 295/393 (75.06%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSA 62
           MATLTSSMQANLLS HSL            SSS++S+FPA FSLHFSALKVHALSSN SA
Sbjct: 1   MATLTSSMQANLLSDHSL-------PPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASA 60

Query: 63  FFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKR 122
           FFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLEL +          
Sbjct: 61  FFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEA--------- 120

Query: 123 TMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSSQH 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 IRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHG 242
                  +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHG
Sbjct: 181 -------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHG 240

Query: 243 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEE 302
           VVRAEEDAETV+ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDR KVREPAPIVVEDEE
Sbjct: 241 VVRAEEDAETVFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEE 300

Query: 303 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 362
           EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK
Sbjct: 301 EEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 310

Query: 363 DGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           DGGYGLIIPKENG AEKLE VTVEAAREPSLAE
Sbjct: 361 DGGYGLIIPKENGTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of CaUC02G025790 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 5.8e-124
Identity = 268/398 (67.34%), Postives = 283/398 (71.11%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSS 62
           MA LTSSMQ NLLS HSL     + SSSSSSSS++S FP SFSL    + + LK HALSS
Sbjct: 1   MAALTSSMQTNLLSAHSL-----TPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSS 60

Query: 63  NTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVK 122
           + SAFFNSC   F TI    R RHA+ SF++RMSWDG LSSVKLIVQGKNLEL +     
Sbjct: 61  HASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEA---- 120

Query: 123 ESGKRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHI 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 KSSQHIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 242
                       +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF
Sbjct: 181 ------------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 240

Query: 243 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIV 302
           TKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDR K+REPAPIV
Sbjct: 241 TKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIV 300

Query: 303 VEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI 362
           VEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI
Sbjct: 301 VEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINI 317

Query: 363 LYKRKDGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           LYKRKDGGYGLIIPKE+G AEK+ETVTVE ARE SLAE
Sbjct: 361 LYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 317

[Close]

BLAST of CaUC02G025790 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 9.9e-124
Identity = 268/399 (67.17%), Postives = 280/399 (70.18%), Query Frame = 0


Query: 3   MATLTSSMQANLLSYHSLSSSTSSSSSSSSSSSSISFFPASFSL----HFSALKVHALSS 62
           MATLTSSM  NLL             S+ SSSS+ S FPASFSL    + SALK+H LSS
Sbjct: 1   MATLTSSMHTNLL-------------SAPSSSSTFSTFPASFSLLTSTNSSALKIHPLSS 60

Query: 63  NTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKE 122
           +TS FFNSC  F TI+   R+RHA+NSF +RMSWDG LSSVKLIVQGKNLEL +      
Sbjct: 61  HTSPFFNSCNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEA----- 120

Query: 123 SGKRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIK 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 183 SSQHIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 242
                      +KKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT
Sbjct: 181 -----------VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 240

Query: 243 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVV 302
           KKHGVVR EEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVV
Sbjct: 241 KKHGVVRGEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVV 300

Query: 303 ED--EEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEIN 362
           ED  EEEEV  ED GEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEIN
Sbjct: 301 EDEEEEEEVSLEDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEIN 310

Query: 363 ILYKRKDGGYGLIIPKENGKAEKLETVTVEAAREPSLAE 396
           ILYKRKDGGYGLIIPKENG+AEKLE VTVE AREPSLAE
Sbjct: 361 ILYKRKDGGYGLIIPKENGRAEKLEPVTVEPAREPSLAE 310

[Close]

BLAST of CaUC02G025790 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 2.7e-121
Identity = 257/376 (68.35%), Postives = 271/376 (72.07%), Query Frame = 0


Query: 25  SSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRS 84
           SSSSSSSSSSS++S FP SFSL    + + LK+HALSS+ SAFFNSC   F TI    R 
Sbjct: 24  SSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRK 83

Query: 85  RHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKRTMATSYFPISTVICLKE 144
           RHA+ SF++RMSWDG LSSVKLIVQGKNLEL +                           
Sbjct: 84  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEA-------------------------- 143

Query: 145 SFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSSQHIRGILVIIKKHVEEKVG 204
                                                             +KKHVEEKVG
Sbjct: 144 --------------------------------------------------VKKHVEEKVG 203

Query: 205 KAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDL 264
           KAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDL
Sbjct: 204 KAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDL 263

Query: 265 VSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEVFQEDGGEVIDEIVR 324
           VSSI+QRKLRKIKEKDSD GRHMKGFDR K+REPAPIVVEDEEEEV QEDGGE IDEIVR
Sbjct: 264 VSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVR 323

Query: 325 TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEK 384
           TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK
Sbjct: 324 TKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEK 323

Query: 385 LETVTVEAAREPSLAE 396
           +ETVTVE ARE SLAE
Sbjct: 384 IETVTVEVAREASLAE 323

[Close]

BLAST of CaUC02G025790 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 316.6 bits (810), Expect = 2.8e-86
Identity = 183/324 (56.48%), Postives = 209/324 (64.51%), Query Frame = 0


Query: 78  RSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKRTMATSYFPISTVICL 137
           R  +  +S  V+MSWDG L+SVKLI+QGKNLEL +                         
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSE------------------------- 120

Query: 138 KESFVKLDQDICRPLFLSLNTRHTTQALSSCLDLEHDTHIKSSQHIRGILVIIKKHVEEK 197
                                                               IK+HVEEK
Sbjct: 121 ---------------------------------------------------PIKQHVEEK 180

Query: 198 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 257
           VGK+VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA I
Sbjct: 181 VGKSVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACI 240

Query: 258 DLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPA-PIVVEDEEEEV-----FQEDGG 317
           DLVS+IIQRKLRKIKEKDSD GRHMKGF+RLKVREP    VVED E+        +E+  
Sbjct: 241 DLVSTIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEED 300

Query: 318 EVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP 377
           ++I EIVRTK F+MPPLTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIP
Sbjct: 301 DLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIP 308

Query: 378 KENGKAEKLETVTVEAAREPSLAE 396
           K++GKAEK+E +  E   E S AE
Sbjct: 361 KKDGKAEKVEPLPTEQLNEHSFAE 308

The following BLAST results are available for this feature:

BLAST of CaUC02G025790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147328.1	5.6e-137	72.01	ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hyp...	[more]
XP_008460813.1	9.5e-137	72.01	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023...	[more]
XP_038900446.1	1.8e-132	71.39	ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida]	[more]
KAG7014676.1	8.3e-125	68.09	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG6576623.1	9.2e-124	67.84	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of CaUC02G025790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19954	5.1e-77	47.41	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P74518	2.3e-29	43.39	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
P47908	1.4e-26	39.67	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
Q9RVE7	1.7e-16	31.89	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
Q49VV1	3.9e-16	33.33	Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. sap...	[more]

BLAST of CaUC02G025790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQR1	4.6e-137	72.01	Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCT7	4.6e-137	72.01	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1E3S3	5.8e-124	67.34	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1CJG5	9.9e-124	67.17	ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1J523	2.7e-121	68.35	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CaUC02G025790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24490.1	2.8e-86	56.48	30S ribosomal protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	3.30.505.50		coord: 327..379 e-value: 2.8E-21 score: 76.8
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 189..278 e-value: 9.3E-14 score: 49.7
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 190..274 e-value: 2.1E-16 score: 60.4
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 190..274 e-value: 2.67008E-18 score: 77.1701
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 315..368 e-value: 6.4E-26 score: 89.8
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	3.30.160.100		coord: 188..282 e-value: 9.7E-16 score: 59.8
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 190..281
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 85..112
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 190..375
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 85..112
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 190..375

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G025790.1	CaUC02G025790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006417	regulation of translation
biological_process	GO:0044238	primary metabolic process