CaUC01G019140 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G019140
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Ciama_Chr01: 32287583 .. 32289627 (+)
RNA-Seq Expression	CaUC01G019140
Synteny	CaUC01G019140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGTTCTTTCATCCAGGAGGAAAGCTGAAATTTTTTTGTGGTTTTTCAAGTGGGGTTTGCAAGTTCTTATAGATATAAATATAAATTATATTAAAAGAAAGAAACTGAGATTAGAATGAAAGGAAATGAGTTGGATGGAGTTGGGTATGAATATGAATGGCTACTTGACTCCCAATTTCTGGCTACACACTGTTGTTTGCTGGTTTGTGATTTTGTGTTGTTGAGTATTGTAACTTTATTTGAAATCTAAAAAGTGTTTTTTATGGATGCTTTAATGAAATAATATTTAATTATTCAGTATCTTGAGACACTCTATACTTAATACATTATTATGAAAATCTAAAGAAATTTATTTTGATTCTTCTAATAAGTTTTCTAACTCTTCACATACTTTTTTTAGTTTTTTTTTTTTTTTTTTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTCGTTTTGTCTTTCCTCTTGCTTTCTCTTCCCTATCTTGTGGCTATTCCCTTTACAACCCTTTGATCTGAGTTGAAAAAAGTCGAAAATATTGTTTGCTAATGCTAACAAAGAGTTGAGAAAAAATACTTATTTTAAAAGATGAAGTATTTTGGTAACCATTTTTTTTAGGTCATTGCAAGAGATGATATCTTGAGAAATTGGCCTGAGTTGTTTTTAAAGGGTAATTTGGACCTCTCATTTTTAAAAAGTCTACCAATATTCTTCCAATAAGTTCCAAATTAATGCTTCCAATCTCACTCCATCAAATTACTTGGTCCGTTGGAAAGAGCACATAATTCTTATGGCCATTCTCTAACATCATGGTCTTATTCCGTCAGCAACACATCCGGAGAAATTTTACAGCTTTGGCAGTCGCCGGAACGGAGACGTAGTATCATCTTCGTCGTCTAAATACAAAATCCGAACCTTCAACCATGAACACCCATTTCGGAAATCAGGTAGATTTGGCCGAAGCTAACAGCGGGTTGAGACAATTAGTGAGAACCAGTCACTTGAAAGATGCACACGACATGTTCGATCAAATGTCTCAAAGGGATGAGGTTTCATGGACTAATATTATTTCTGGGCATGTCAATGCCTCAGACTCCTCTGCAACCTTGCTTTTGTTCTCAAAGATGCGGCTTCAGTCTGAGCTTCGTATTGATCCCTTTCTACTTAATCTTGGTCAAGGCTTGTGGGCTCGGTTTGAATTATTTTTATGGTACAAACTTGCATGGGTTTTCAGTCAAAACAGGTCTAGTCAATTCTGTTTCGTGGGTAGCGCTCTTCTCGACATGTATATGAAAATTGGAGAAATTGGGAGAAGTTGTAAAGTGTTCGATGAAGTGCCAACAAGAAATGCGGTGACTTAGACGGCAGTTATAACTGGGCTTGTTCGTGCAGGGTATAACGAGGAAGGGTTGTCTTACTTTTCTGAAATGGGGAGGTCGAAGGTGGAATATGACTCGTATGCATATGCTATAGCATTGAAGGCCCATGCTCATTCAGGTGCACTAAATCATGGAAGAGCAATTCATACATAG

mRNA sequence

ATGAATCAAACTGAGATTAGAATGAAAGGAAATGAGTTGGATGGAGTTGGGTATGAATATGAATGGCTACTTGACTCCCAATTTCTGGCTACACACTGTTGTTTGCTGGTCATTGCAAGAGATGATATCTTGAGAAATTGGCCTGAGTTGTTTTTAAAGGCAACACATCCGGAGAAATTTTACAGCTTTGGCAGTCGCCGGAACGGAGACGTAGTATCATCTTCGTCGTCTAAATACAAAATCCGAACCTTCAACCATGAACACCCATTTCGGAAATCAGATTTGGCCGAAGCTAACAGCGGGTTGAGACAATTAGTGAGAACCAGTCACTTGAAAGATGCACACGACATGTTCGATCAAATGTCTCAAAGGGATGAGGTTTCATGGACTAATATTATTTCTGGGCATGTCAATGCCTCAGACTCCTCTGCAACCTTGCTTTTGTTCTCAAAGATGCGGCTTCAGTCTGAGCTTCGTATTGATCCCTTTCTACTTAATCTTGGTCAAGGCTTGTGGGCTCGGTTTGAATTATTTTTATGGTACAAACTTGCATGGGTTTTCAGTCAAAACAGGTCTAGTCAATTCTGTTTCGTGGGTAGCGCTCTTCTCGACATGTATATGAAAATTGGAGAAATTGGGAGAAGTTGTAAAGTGTTCGATGAAGTGCCAACAAGAAATGCGACGGCAGTTATAACTGGGCTTGTTCGTGCAGGGTATAACGAGGAAGGGTTGTCTTACTTTTCTGAAATGGGGAGGTCGAAGGTGGAATATGACTCGTATGCATATGCTATAGCATTGAAGGCCCATGCTCATTCAGGTGCACTAAATCATGGAAGAGCAATTCATACATAG

Coding sequence (CDS)

ATGAATCAAACTGAGATTAGAATGAAAGGAAATGAGTTGGATGGAGTTGGGTATGAATATGAATGGCTACTTGACTCCCAATTTCTGGCTACACACTGTTGTTTGCTGGTCATTGCAAGAGATGATATCTTGAGAAATTGGCCTGAGTTGTTTTTAAAGGCAACACATCCGGAGAAATTTTACAGCTTTGGCAGTCGCCGGAACGGAGACGTAGTATCATCTTCGTCGTCTAAATACAAAATCCGAACCTTCAACCATGAACACCCATTTCGGAAATCAGATTTGGCCGAAGCTAACAGCGGGTTGAGACAATTAGTGAGAACCAGTCACTTGAAAGATGCACACGACATGTTCGATCAAATGTCTCAAAGGGATGAGGTTTCATGGACTAATATTATTTCTGGGCATGTCAATGCCTCAGACTCCTCTGCAACCTTGCTTTTGTTCTCAAAGATGCGGCTTCAGTCTGAGCTTCGTATTGATCCCTTTCTACTTAATCTTGGTCAAGGCTTGTGGGCTCGGTTTGAATTATTTTTATGGTACAAACTTGCATGGGTTTTCAGTCAAAACAGGTCTAGTCAATTCTGTTTCGTGGGTAGCGCTCTTCTCGACATGTATATGAAAATTGGAGAAATTGGGAGAAGTTGTAAAGTGTTCGATGAAGTGCCAACAAGAAATGCGACGGCAGTTATAACTGGGCTTGTTCGTGCAGGGTATAACGAGGAAGGGTTGTCTTACTTTTCTGAAATGGGGAGGTCGAAGGTGGAATATGACTCGTATGCATATGCTATAGCATTGAAGGCCCATGCTCATTCAGGTGCACTAAATCATGGAAGAGCAATTCATACATAG

Protein sequence

MNQTEIRMKGNELDGVGYEYEWLLDSQFLATHCCLLVIARDDILRNWPELFLKATHPEKFYSFGSRRNGDVVSSSSSKYKIRTFNHEHPFRKSDLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMRLQSELRIDPFLLNLGQGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEIGRSCKVFDEVPTRNATAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAHSGALNHGRAIHT

Homology

[Close]

BLAST of CaUC01G019140 vs. NCBI nr
Match: XP_008447344.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Cucumis melo] >XP_016900384.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Cucumis melo] >KAA0037882.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ98016.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-65
Identity = 151/238 (63.45%), Postives = 177/238 (74.37%), Query Frame = 0


Query: 60  FYSFGSRRNGDV--VSSSSSKYKIRTFNHE--------HPFRKSDLAEANSGLRQLVRTS 119
           FY    +RN  V  V+ +++   +R  N +        H   K DLAEAN+ L++LV+T+
Sbjct: 4   FYRQHIKRNFTVLAVAGATTNDNLRLLNKKSLPLTPNVHFSNKVDLAEANNQLKKLVKTN 63

Query: 120 HLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMRLQSELRIDPFLLNLGQ 179
           HL DA +MFDQ+ QRDEVSWTNIISG+VNAS+SS  LLLFSKMRLQSE+RIDPFLL+LG 
Sbjct: 64  HLNDARNMFDQLPQRDEVSWTNIISGYVNASNSSEALLLFSKMRLQSEIRIDPFLLSLGL 123

Query: 180 GLWARFELFLWYKLAWVFS-QNRSSQFCFVGSALLDMYMKIGEIGRSCKVFDEVPTRNA- 239
                   +L+      FS +       FVGSALLDMYMKIGEIGRSCKVFDE+PTRNA 
Sbjct: 124 KTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAV 183

Query: 240 --TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAHSGALNHGRAIHT 284
             TAVITGLVRAGY+E+GL+YFSEMGRSKVEYDSYAYAIALKA A SGALNHGR+IHT
Sbjct: 184 TWTAVITGLVRAGYSEDGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRSIHT 241

[Close]

BLAST of CaUC01G019140 vs. NCBI nr
Match: XP_038887347.1 (putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida] >XP_038887348.1 putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida] >XP_038887349.1 putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida] >XP_038887350.1 putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 6.9e-65
Identity = 151/243 (62.14%), Postives = 172/243 (70.78%), Query Frame = 0


Query: 50  LFLKATHPEKFYSF---GSRRNGDVVSSSSSKYKIRTFNHEHPFRKSDLAEANSGLRQLV 109
           +F +  H  + ++F         D +   ++K K    N  H     DL +AN+ L+ LV
Sbjct: 2   VFFRRQHIRRNFTFLAVAGEETKDNLRHLNTKLKPSNLN-THFSNNVDLPKANNELKLLV 61

Query: 110 RTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMRLQSELRIDPFLLN 169
           RT HLKDA DMFDQ+ QRDEVSWTNIISG+VNASDSS  LLLFSKMRLQSELRIDPFLL+
Sbjct: 62  RTGHLKDARDMFDQLPQRDEVSWTNIISGYVNASDSSEALLLFSKMRLQSELRIDPFLLS 121

Query: 170 LGQ---GLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEIGRSCKVFDEVP 229
           LG    GL   F  F    L     +       FVGSALLDMYMKIGEIGRSCK+FDE+P
Sbjct: 122 LGLKACGLGLNF--FYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKMFDEMP 181

Query: 230 TRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAHSGALNHGRA 284
           TRN    TAVITGLVRAGY+E+GL+YFSEMGRSKVEYDSYAYAIALKA A  GALNHGR+
Sbjct: 182 TRNVVTWTAVITGLVRAGYSEDGLAYFSEMGRSKVEYDSYAYAIALKASADLGALNHGRS 241

[Close]

BLAST of CaUC01G019140 vs. NCBI nr
Match: XP_022949984.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-64
Identity = 149/254 (58.66%), Postives = 175/254 (68.90%), Query Frame = 0


Query: 35  LLVIARDDILRNWPELFLKATHPEKF-YSFGSRRNGDVVSSSSSKYKIRTFNHEHPFRKS 94
           +++  R  I RN+  L L  T  + + +   ++    +V++             H   + 
Sbjct: 26  MILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLEPSIVNT-------------HFANQV 85

Query: 95  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 154
           DL E NS L++LVRTS LKDA DMFD+M QRD VSWTNIISG+VNASDSS  LLLFSKMR
Sbjct: 86  DLVEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSSEALLLFSKMR 145

Query: 155 LQSELRIDPFLLNLG-QGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEI 214
           LQSELRIDPF+L+LG +             L     +       FVGSALLDMYMKIGE+
Sbjct: 146 LQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEV 205

Query: 215 GRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAH 274
           GRSC+VFDE+PTRN    TAVITGLVRAGYNE+GL+YFSEMGRSKVEYDSYAYAIALKA 
Sbjct: 206 GRSCEVFDEMPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKAS 265

Query: 275 AHSGALNHGRAIHT 284
           A SGALNHGRAIHT
Sbjct: 266 ADSGALNHGRAIHT 266

[Close]

BLAST of CaUC01G019140 vs. NCBI nr
Match: XP_023544313.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-64
Identity = 149/254 (58.66%), Postives = 175/254 (68.90%), Query Frame = 0


Query: 35  LLVIARDDILRNWPELFLKATHPEKF-YSFGSRRNGDVVSSSSSKYKIRTFNHEHPFRKS 94
           +++  R  I RN+  L L  T  + + +   ++    +V++             H   + 
Sbjct: 26  MILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLEPSIVNT-------------HFANQV 85

Query: 95  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 154
           DL E NS L++LVRTS LKDA DMFD+M QRD VSWTNIISG+VNASDSS  LLLFSKMR
Sbjct: 86  DLVEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSSEALLLFSKMR 145

Query: 155 LQSELRIDPFLLNLG-QGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEI 214
           LQSELRIDPF+L+LG +             L     +       FVGSALLDMYMKIGE+
Sbjct: 146 LQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEV 205

Query: 215 GRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAH 274
           GRSC+VFDE+PTRN    TAVITGLVRAGYNE+GL+YFSEMGRSKVEYDSYAYAIALKA 
Sbjct: 206 GRSCEVFDEMPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKAS 265

Query: 275 AHSGALNHGRAIHT 284
           A SGALNHGRAIHT
Sbjct: 266 ADSGALNHGRAIHT 266

[Close]

BLAST of CaUC01G019140 vs. NCBI nr
Match: XP_022949985.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-64
Identity = 149/254 (58.66%), Postives = 175/254 (68.90%), Query Frame = 0


Query: 35  LLVIARDDILRNWPELFLKATHPEKF-YSFGSRRNGDVVSSSSSKYKIRTFNHEHPFRKS 94
           +++  R  I RN+  L L  T  + + +   ++    +V++             H   + 
Sbjct: 1   MILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLEPSIVNT-------------HFANQV 60

Query: 95  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 154
           DL E NS L++LVRTS LKDA DMFD+M QRD VSWTNIISG+VNASDSS  LLLFSKMR
Sbjct: 61  DLVEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSSEALLLFSKMR 120

Query: 155 LQSELRIDPFLLNLG-QGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEI 214
           LQSELRIDPF+L+LG +             L     +       FVGSALLDMYMKIGE+
Sbjct: 121 LQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEV 180

Query: 215 GRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAH 274
           GRSC+VFDE+PTRN    TAVITGLVRAGYNE+GL+YFSEMGRSKVEYDSYAYAIALKA 
Sbjct: 181 GRSCEVFDEMPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKAS 240

Query: 275 AHSGALNHGRAIHT 284
           A SGALNHGRAIHT
Sbjct: 241 ADSGALNHGRAIHT 241

[Close]

BLAST of CaUC01G019140 vs. ExPASy Swiss-Prot
Match: Q9STS9 (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-30
Identity = 81/192 (42.19%), Postives = 119/192 (61.98%), Query Frame = 0


Query: 97  EANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR-LQ 156
           + NS LR L+   +L+ A  +FD+M   D VSWT+II  +V A++S   L+LFS MR + 
Sbjct: 42  DPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVD 101

Query: 157 SELRIDPFLLNLGQGLWARFELFLWYKLAWVFSQNRS-SQFCFVGSALLDMYMKIGEIGR 216
             +  D  +L++      +     + +    ++   S     +VGS+LLDMY ++G+I +
Sbjct: 102 HAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDK 161

Query: 217 SCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAH 276
           SC+VF E+P RNA   TA+ITGLV AG  +EGL+YFSEM RS+   D+Y +AIALKA A 
Sbjct: 162 SCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAG 221

Query: 277 SGALNHGRAIHT 284
              + +G+AIHT
Sbjct: 222 LRQVKYGKAIHT 233

[Close]

BLAST of CaUC01G019140 vs. ExPASy Swiss-Prot
Match: Q0WNP3 (Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A2 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.2e-15
Identity = 55/195 (28.21%), Postives = 100/195 (51.28%), Query Frame = 0


Query: 92  KSDLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSK 151
           K+D+    S +    +   + D   +FD MS R+ V+WT+II+ H         + LF  
Sbjct: 316 KTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRI 375

Query: 152 MRLQSELRIDPFLLNLGQGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGE 211
           M+ +  +  +  ++++ +   +   L L  +L     +N   +  ++GS L+ +Y K GE
Sbjct: 376 MKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGE 435

Query: 212 IGRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKA 271
              +  V  ++P+R+    TA+I+G    G+  E L +  EM +  VE + + Y+ ALKA
Sbjct: 436 SRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKA 495

Query: 272 HAHSGALNHGRAIHT 284
            A+S +L  GR+IH+
Sbjct: 496 CANSESLLIGRSIHS 510

[Close]

BLAST of CaUC01G019140 vs. ExPASy Swiss-Prot
Match: Q9XE98 (Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E99 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.9e-15
Identity = 61/193 (31.61%), Postives = 96/193 (49.74%), Query Frame = 0


Query: 94  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 153
           D+A  NS L    +  H+ DA D+FDQM QRD VSW  +ISG+ +  + S  L L  +MR
Sbjct: 178 DIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMR 237

Query: 154 LQSELRIDPFLLNLGQGLWARF-ELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEI 213
               LR D         +     +L +   L     +        + +AL+ MY+K G+ 
Sbjct: 238 -GDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKE 297

Query: 214 GRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAH 273
             S +V + +P ++    T +I+GL+R G  E+ L  FSEM +S  +  S A A  + + 
Sbjct: 298 EASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASC 357

Query: 274 AHSGALNHGRAIH 283
           A  G+ + G ++H
Sbjct: 358 AQLGSFDLGASVH 369

[Close]

BLAST of CaUC01G019140 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-13
Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 0


Query: 94  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 153
           D+   NS +    +   +  A ++FD+M QR+ VSW ++ISG V        L +F +M+
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250

Query: 154 LQSELRIDPF----LLNLGQGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKI 213
            + +++ D F    LLN    L A  E   W  +     +NR      V +AL+DMY K 
Sbjct: 251 -EKDVKPDGFTMVSLLNACAYLGAS-EQGRW--IHEYIVRNRFELNSIVVTALIDMYCKC 310

Query: 214 GEIGRSCKVFDEVPTRNAT---AVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIAL 273
           G I     VF+  P +  +   ++I GL   G+ E  +  FSE+ RS +E DS ++   L
Sbjct: 311 GCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVL 370

Query: 274 KAHAHSGALN 277
            A AHSG ++
Sbjct: 371 TACAHSGEVH 376

[Close]

BLAST of CaUC01G019140 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-13
Identity = 51/189 (26.98%), Postives = 97/189 (51.32%), Query Frame = 0


Query: 99  NSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMRLQSEL 158
           NS ++  V+   +  A  +F +M++++ +SWT +ISG+V A  +   L LF +M+     
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-- 244

Query: 159 RIDPFLLNLGQGLWARFELFLWYKLAWVFS---QNRSSQFCFVGSALLDMYMKIGEIGRS 218
            ++P  ++L   L A  +L    +  W+ S   + R      +G  L+DMY K GE+  +
Sbjct: 245 -VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 304

Query: 219 CKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAHS 278
            +VF  +  ++    TA+I+G    G+  E +S F EM +  ++ +   +   L A +++
Sbjct: 305 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 364

Query: 279 GALNHGRAI 282
           G +  G+ I
Sbjct: 365 GLVEEGKLI 370

[Close]

BLAST of CaUC01G019140 vs. ExPASy TrEMBL
Match: A0A1S4DWM7 (putative pentatricopeptide repeat-containing protein At3g47840 OS=Cucumis melo OX=3656 GN=LOC103489816 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 151/238 (63.45%), Postives = 177/238 (74.37%), Query Frame = 0


Query: 60  FYSFGSRRNGDV--VSSSSSKYKIRTFNHE--------HPFRKSDLAEANSGLRQLVRTS 119
           FY    +RN  V  V+ +++   +R  N +        H   K DLAEAN+ L++LV+T+
Sbjct: 4   FYRQHIKRNFTVLAVAGATTNDNLRLLNKKSLPLTPNVHFSNKVDLAEANNQLKKLVKTN 63

Query: 120 HLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMRLQSELRIDPFLLNLGQ 179
           HL DA +MFDQ+ QRDEVSWTNIISG+VNAS+SS  LLLFSKMRLQSE+RIDPFLL+LG 
Sbjct: 64  HLNDARNMFDQLPQRDEVSWTNIISGYVNASNSSEALLLFSKMRLQSEIRIDPFLLSLGL 123

Query: 180 GLWARFELFLWYKLAWVFS-QNRSSQFCFVGSALLDMYMKIGEIGRSCKVFDEVPTRNA- 239
                   +L+      FS +       FVGSALLDMYMKIGEIGRSCKVFDE+PTRNA 
Sbjct: 124 KTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAV 183

Query: 240 --TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAHSGALNHGRAIHT 284
             TAVITGLVRAGY+E+GL+YFSEMGRSKVEYDSYAYAIALKA A SGALNHGR+IHT
Sbjct: 184 TWTAVITGLVRAGYSEDGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRSIHT 241

[Close]

BLAST of CaUC01G019140 vs. ExPASy TrEMBL
Match: A0A5A7T329 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00440 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 151/238 (63.45%), Postives = 177/238 (74.37%), Query Frame = 0


Query: 60  FYSFGSRRNGDV--VSSSSSKYKIRTFNHE--------HPFRKSDLAEANSGLRQLVRTS 119
           FY    +RN  V  V+ +++   +R  N +        H   K DLAEAN+ L++LV+T+
Sbjct: 4   FYRQHIKRNFTVLAVAGATTNDNLRLLNKKSLPLTPNVHFSNKVDLAEANNQLKKLVKTN 63

Query: 120 HLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMRLQSELRIDPFLLNLGQ 179
           HL DA +MFDQ+ QRDEVSWTNIISG+VNAS+SS  LLLFSKMRLQSE+RIDPFLL+LG 
Sbjct: 64  HLNDARNMFDQLPQRDEVSWTNIISGYVNASNSSEALLLFSKMRLQSEIRIDPFLLSLGL 123

Query: 180 GLWARFELFLWYKLAWVFS-QNRSSQFCFVGSALLDMYMKIGEIGRSCKVFDEVPTRNA- 239
                   +L+      FS +       FVGSALLDMYMKIGEIGRSCKVFDE+PTRNA 
Sbjct: 124 KTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAV 183

Query: 240 --TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAHSGALNHGRAIHT 284
             TAVITGLVRAGY+E+GL+YFSEMGRSKVEYDSYAYAIALKA A SGALNHGR+IHT
Sbjct: 184 TWTAVITGLVRAGYSEDGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRSIHT 241

[Close]

BLAST of CaUC01G019140 vs. ExPASy TrEMBL
Match: A0A6J1GEH8 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453211 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 7.5e-65
Identity = 149/254 (58.66%), Postives = 175/254 (68.90%), Query Frame = 0


Query: 35  LLVIARDDILRNWPELFLKATHPEKF-YSFGSRRNGDVVSSSSSKYKIRTFNHEHPFRKS 94
           +++  R  I RN+  L L  T  + + +   ++    +V++             H   + 
Sbjct: 26  MILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLEPSIVNT-------------HFANQV 85

Query: 95  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 154
           DL E NS L++LVRTS LKDA DMFD+M QRD VSWTNIISG+VNASDSS  LLLFSKMR
Sbjct: 86  DLVEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSSEALLLFSKMR 145

Query: 155 LQSELRIDPFLLNLG-QGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEI 214
           LQSELRIDPF+L+LG +             L     +       FVGSALLDMYMKIGE+
Sbjct: 146 LQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEV 205

Query: 215 GRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAH 274
           GRSC+VFDE+PTRN    TAVITGLVRAGYNE+GL+YFSEMGRSKVEYDSYAYAIALKA 
Sbjct: 206 GRSCEVFDEMPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKAS 265

Query: 275 AHSGALNHGRAIHT 284
           A SGALNHGRAIHT
Sbjct: 266 ADSGALNHGRAIHT 266

[Close]

BLAST of CaUC01G019140 vs. ExPASy TrEMBL
Match: A0A6J1GEB4 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453211 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 7.5e-65
Identity = 149/254 (58.66%), Postives = 175/254 (68.90%), Query Frame = 0


Query: 35  LLVIARDDILRNWPELFLKATHPEKF-YSFGSRRNGDVVSSSSSKYKIRTFNHEHPFRKS 94
           +++  R  I RN+  L L  T  + + +   ++    +V++             H   + 
Sbjct: 1   MILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLEPSIVNT-------------HFANQV 60

Query: 95  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 154
           DL E NS L++LVRTS LKDA DMFD+M QRD VSWTNIISG+VNASDSS  LLLFSKMR
Sbjct: 61  DLVEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSSEALLLFSKMR 120

Query: 155 LQSELRIDPFLLNLG-QGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEI 214
           LQSELRIDPF+L+LG +             L     +       FVGSALLDMYMKIGE+
Sbjct: 121 LQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEV 180

Query: 215 GRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAH 274
           GRSC+VFDE+PTRN    TAVITGLVRAGYNE+GL+YFSEMGRSKVEYDSYAYAIALKA 
Sbjct: 181 GRSCEVFDEMPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKAS 240

Query: 275 AHSGALNHGRAIHT 284
           A SGALNHGRAIHT
Sbjct: 241 ADSGALNHGRAIHT 241

[Close]

BLAST of CaUC01G019140 vs. ExPASy TrEMBL
Match: A0A0A0KXW2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G335250 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 143/200 (71.50%), Postives = 159/200 (79.50%), Query Frame = 0


Query: 88  HPFRKSDLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLL 147
           H   K DLAEAN+ L+ LV+T+HLKDA D+FDQ+ QRDEVSWTNIISG+VN+SDSS  L 
Sbjct: 42  HFSNKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALR 101

Query: 148 LFSKMRLQSELRIDPFLLNLGQGLWARFELFLWYKLAWVFS-QNRSSQFCFVGSALLDMY 207
           LFSKMRLQSELRIDPFLL+LG         +L+      FS +       FVGSALLDMY
Sbjct: 102 LFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMY 161

Query: 208 MKIGEIGRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYA 267
           MKIGEIGRSCKVFDE+PTRNA   TAVITGLVRAGY+E GL+YFS MGRSKVEYDSYAYA
Sbjct: 162 MKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYA 221

Query: 268 IALKAHAHSGALNHGRAIHT 284
           IALKA A SGALNHGR+IHT
Sbjct: 222 IALKASADSGALNHGRSIHT 241

[Close]

BLAST of CaUC01G019140 vs. TAIR 10
Match: AT3G47840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-31
Identity = 81/192 (42.19%), Postives = 119/192 (61.98%), Query Frame = 0


Query: 97  EANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR-LQ 156
           + NS LR L+   +L+ A  +FD+M   D VSWT+II  +V A++S   L+LFS MR + 
Sbjct: 42  DPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVD 101

Query: 157 SELRIDPFLLNLGQGLWARFELFLWYKLAWVFSQNRS-SQFCFVGSALLDMYMKIGEIGR 216
             +  D  +L++      +     + +    ++   S     +VGS+LLDMY ++G+I +
Sbjct: 102 HAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDK 161

Query: 217 SCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAH 276
           SC+VF E+P RNA   TA+ITGLV AG  +EGL+YFSEM RS+   D+Y +AIALKA A 
Sbjct: 162 SCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAG 221

Query: 277 SGALNHGRAIHT 284
              + +G+AIHT
Sbjct: 222 LRQVKYGKAIHT 233

[Close]

BLAST of CaUC01G019140 vs. TAIR 10
Match: AT4G18520.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-16
Identity = 55/195 (28.21%), Postives = 100/195 (51.28%), Query Frame = 0


Query: 92  KSDLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSK 151
           K+D+    S +    +   + D   +FD MS R+ V+WT+II+ H         + LF  
Sbjct: 316 KTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRI 375

Query: 152 MRLQSELRIDPFLLNLGQGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGE 211
           M+ +  +  +  ++++ +   +   L L  +L     +N   +  ++GS L+ +Y K GE
Sbjct: 376 MKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGE 435

Query: 212 IGRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKA 271
              +  V  ++P+R+    TA+I+G    G+  E L +  EM +  VE + + Y+ ALKA
Sbjct: 436 SRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKA 495

Query: 272 HAHSGALNHGRAIHT 284
            A+S +L  GR+IH+
Sbjct: 496 CANSESLLIGRSIHS 510

[Close]

BLAST of CaUC01G019140 vs. TAIR 10
Match: AT4G04370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 6.3e-16
Identity = 61/193 (31.61%), Postives = 96/193 (49.74%), Query Frame = 0


Query: 94  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 153
           D+A  NS L    +  H+ DA D+FDQM QRD VSW  +ISG+ +  + S  L L  +MR
Sbjct: 178 DIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMR 237

Query: 154 LQSELRIDPFLLNLGQGLWARF-ELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKIGEI 213
               LR D         +     +L +   L     +        + +AL+ MY+K G+ 
Sbjct: 238 -GDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKE 297

Query: 214 GRSCKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAH 273
             S +V + +P ++    T +I+GL+R G  E+ L  FSEM +S  +  S A A  + + 
Sbjct: 298 EASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASC 357

Query: 274 AHSGALNHGRAIH 283
           A  G+ + G ++H
Sbjct: 358 AQLGSFDLGASVH 369

[Close]

BLAST of CaUC01G019140 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-14
Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 0


Query: 94  DLAEANSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMR 153
           D+   NS +    +   +  A ++FD+M QR+ VSW ++ISG V        L +F +M+
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250

Query: 154 LQSELRIDPF----LLNLGQGLWARFELFLWYKLAWVFSQNRSSQFCFVGSALLDMYMKI 213
            + +++ D F    LLN    L A  E   W  +     +NR      V +AL+DMY K 
Sbjct: 251 -EKDVKPDGFTMVSLLNACAYLGAS-EQGRW--IHEYIVRNRFELNSIVVTALIDMYCKC 310

Query: 214 GEIGRSCKVFDEVPTRNAT---AVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIAL 273
           G I     VF+  P +  +   ++I GL   G+ E  +  FSE+ RS +E DS ++   L
Sbjct: 311 GCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVL 370

Query: 274 KAHAHSGALN 277
            A AHSG ++
Sbjct: 371 TACAHSGEVH 376

[Close]

BLAST of CaUC01G019140 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-14
Identity = 51/189 (26.98%), Postives = 97/189 (51.32%), Query Frame = 0


Query: 99  NSGLRQLVRTSHLKDAHDMFDQMSQRDEVSWTNIISGHVNASDSSATLLLFSKMRLQSEL 158
           NS ++  V+   +  A  +F +M++++ +SWT +ISG+V A  +   L LF +M+     
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-- 244

Query: 159 RIDPFLLNLGQGLWARFELFLWYKLAWVFS---QNRSSQFCFVGSALLDMYMKIGEIGRS 218
            ++P  ++L   L A  +L    +  W+ S   + R      +G  L+DMY K GE+  +
Sbjct: 245 -VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 304

Query: 219 CKVFDEVPTRNA---TAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKAHAHS 278
            +VF  +  ++    TA+I+G    G+  E +S F EM +  ++ +   +   L A +++
Sbjct: 305 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 364

Query: 279 GALNHGRAI 282
           G +  G+ I
Sbjct: 365 GLVEEGKLI 370

The following BLAST results are available for this feature:

BLAST of CaUC01G019140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447344.1	2.4e-65	63.45	PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Cucum...	[more]
XP_038887347.1	6.9e-65	62.14	putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispid...	[more]
XP_022949984.1	1.5e-64	58.66	putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucur...	[more]
XP_023544313.1	1.5e-64	58.66	putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucur...	[more]
XP_022949985.1	1.5e-64	58.66	putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 [Cucur...	[more]

BLAST of CaUC01G019140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STS9	3.4e-30	42.19	Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis th...	[more]
Q0WNP3	5.2e-15	28.21	Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidop...	[more]
Q9XE98	8.9e-15	31.61	Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	3.8e-13	32.11	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
Q9FJY7	3.8e-13	26.98	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]

BLAST of CaUC01G019140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWM7	1.2e-65	63.45	putative pentatricopeptide repeat-containing protein At3g47840 OS=Cucumis melo O...	[more]
A0A5A7T329	1.2e-65	63.45	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A6J1GEH8	7.5e-65	58.66	putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 OS=Cuc...	[more]
A0A6J1GEB4	7.5e-65	58.66	putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 OS=Cuc...	[more]
A0A0A0KXW2	1.7e-64	71.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G335250 PE=4 SV=1	[more]

BLAST of CaUC01G019140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47840.1	2.4e-31	42.19	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18520.1	3.7e-16	28.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G04370.1	6.3e-16	31.61	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G42920.1	2.7e-14	32.11	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G66520.1	2.7e-14	26.98	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 185..283 e-value: 4.2E-10 score: 41.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 76..167 e-value: 2.9E-7 score: 32.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 127..153 e-value: 0.78 score: 10.1 coord: 228..254 e-value: 0.0053 score: 16.9
None	No IPR available	PANTHER	PTHR47925:SF95	SUBFAMILY NOT NAMED	coord: 87..283
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 87..283

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G019140.1	CaUC01G019140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding