CaUC01G015960 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G015960
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 29344446 .. 29346853 (+)
RNA-Seq ExpressionCaUC01G015960
SyntenyCaUC01G015960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAATTAAAACAAAGAAGAGAGAGAGTATATGAAGAAACATCCTTTTGGGTTTTGTTGCTTTTTGAATTTTTGCATATCATTTTTTGAACTCAATTGCCCAGAAAAAAAAAAGTGATTTTTTTATAGCAGTGGTGGTGGTACCACGTGAAAGTTCCATGATTCCAACCCAATTCTGGTGAGAGTACCATTTGTAATTCCCAGGAACAGAGAGGTAGAGAGAAAAAGTAAGAAAGAAAAGGGAGAGAAAGATGGAAGCTCCAGCTCCACAGGCCATAGAAATTTCTAGCAAGAACCTTGGTGTAGAAGAAGATGAGGAAGATAAAGGCGTGAATGAGTGGTAATGTTTAATTCTGTTTTGACTCAAAATCAATGTTGATTGGGTTTATTGTGGTTTGAATTAATTGGGTTTATTGTGGTTTGTAACAGTTGTTCTTGCTGTTATGACTGCTCGGAAAGCTGGTTTCATTACTTGTGCTGTTGGGATGATTGTGAGTGTTAGATTAATTGGGATTTAGCAACAACCTGTCGTTTCTTTAACTCTCACTTTCTTCTCCATATATTTCTTTACCTTCCTTTTCCTTTCTTTTTCAGCTTCTTCGCCTTGCTTCATTCATCACTAATCATTAAAAAAAAAAAAAAAAAAAAAAAAATTTGGTCCAAGTTATCTATGCCCAGATGTGCCTTAATCTTGTGACTTTTCAAATTGGGATAACCTCAATTTTTTAATTAAATTAAATTGATGCGACTCTCGTCAAAGTCGAGCATGACTTAATTAGTTATGATTTGATGACCAACATGTTAGAAGTTTGAATCTTTAGCTATTCTTTTCAACAAGTTTTTAATTAAGAGTGTATCCAGATTTCTTAATTTTCATGTTTAATAAATTTTTAGTAACTTCAAAGTTTTTTTTAAAAATAATTAATCTATTAAATATAAGTTTGAATTTATATTTAAAAGGACTCTAATCAAAACTCAAAAACTAAAATACTATTTGGTAATTTTTTTTTTTTTTTTTTGAAAACTAAGTAGATTCTCTATTTTTTTTAACAATATCTTTTAATTACAAGAGTTGAATTTTTTGTTAAATTATTAAGAAAATAATAAGTTTTTAAAATTTACTTTTTTTTTCTAATTTTTAAAATTTGACCTGATTTTTTAAAATATTGGTAAAAAACAGAGTATTAAGTTTCGGTTGATATGTCGATATTTCCATCCATATTTCTAAGTTTCCATGGGTTCGATATCAACATTGAGGGTGAATCCATATTTTCATAATATTGTAGAAAAATGTGCGAAACATAAAAAATAAACAACAAAATGTCACTAATGTGAATATAATATAAATAATAGACTTTTTAACTTGTTTATAAATCCTAAAAGGTTGATTTACTAGTTTAATTTAAGTTCAAAGTTTTTTGTTTTTATATTGTTTCTAGAGATATCCATTGAAATCAACATTTTATCTAAATTTTCATAAAATGAAGACCTCAATATTTTCATCAACGTTAATATTTTAAACTTTGGTAAAAAGTACATAACAAATCTAAAATGAGAAAAAGTACTAATAAACTTAATTTAAAAAAAAAAAAAGAAAAAAAGTTATTTTTAAACATAGCTAAATGAGCGAAACTATTTATAAATATAGAAAAATTTAATAGACTGTTATTACTCAAGTGATAATAATTTATCATAAATTATCGCGGATAAATAGTAAAATTTTTCAATATTTGTAAATAGTTTTAGATTTATTTATAATAATTTCCTAAAGAAAAACTTCAAAAAGTAATTTAACCAAAGAAAATTTCAAAAAAGGAAAATGTAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAGGAAAAAAGAAAAACAAACACAATTATCCCGTGGGACCAGCCCGAGACTTTCTTCCACCAGTGCATTTACGGCGAAACCGCCGTCGGAGTTCGAACGCAATGATCGACCCAACCGATGATGGAACCAAAGACATCGCCGACCTGACCGGCGATTTAATAAGAGGGCCAGTGGACTGCGAGTCTTCCGGTGGCCGTCGATCATAA

mRNA sequence

AAACAATTAAAACAAAGAAGAGAGAGAGTATATGAAGAAACATCCTTTTGGGTTTTGTTGCTTTTTGAATTTTTGCATATCATTTTTTGAACTCAATTGCCCAGAAAAAAAAAAGTGATTTTTTTATAGCAGTGGTGGTGGTACCACGTGAAAGTTCCATGATTCCAACCCAATTCTGGTGAGAGTACCATTTGTAATTCCCAGGAACAGAGAGGTAGAGAGAAAAAGTAAGAAAGAAAAGGGAGAGAAAGATGGAAGCTCCAGCTCCACAGGCCATAGAAATTTCTAGCAAGAACCTTGGTGTAGAAGAAGATGAGGAAGATAAAGGCGTGAATGAGTGTTGTTCTTGCTGTTATGACTGCTCGGAAAGCTGGTTTCATTACTTGTGCTGTTGGGATGATTCCCGAGACTTTCTTCCACCAGTGCATTTACGGCGAAACCGCCGTCGGAGTTCGAACGCAATGATCGACCCAACCGATGATGGAACCAAAGACATCGCCGACCTGACCGGCGATTTAATAAGAGGGCCAGTGGACTGCGAGTCTTCCGGTGGCCGTCGATCATAA

Coding sequence (CDS)

ATGGAAGCTCCAGCTCCACAGGCCATAGAAATTTCTAGCAAGAACCTTGGTGTAGAAGAAGATGAGGAAGATAAAGGCGTGAATGAGTGTTGTTCTTGCTGTTATGACTGCTCGGAAAGCTGGTTTCATTACTTGTGCTGTTGGGATGATTCCCGAGACTTTCTTCCACCAGTGCATTTACGGCGAAACCGCCGTCGGAGTTCGAACGCAATGATCGACCCAACCGATGATGGAACCAAAGACATCGCCGACCTGACCGGCGATTTAATAAGAGGGCCAGTGGACTGCGAGTCTTCCGGTGGCCGTCGATCATAA

Protein sequence

MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWDDSRDFLPPVHLRRNRRRSSNAMIDPTDDGTKDIADLTGDLIRGPVDCESSGGRRS
Homology
[Close]
BLAST of CaUC01G015960 vs. NCBI nr
Match: EOX91334.1 (Uncharacterized protein TCM_000563 [Theobroma cacao])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          MEAPA Q+IE S+ N  VEEDE+DK V+ECCSCCYDC+E+ F YLCC++
Sbjct: 1  MEAPATQSIETSTNNFQVEEDEQDKAVDECCSCCYDCTETCFDYLCCFN 49

[Close]
BLAST of CaUC01G015960 vs. NCBI nr
Match: KAG4173228.1 (hypothetical protein ERO13_A11G046000v2 [Gossypium hirsutum] >TYJ08130.1 hypothetical protein E1A91_A11G053500v1 [Gossypium mustelinum])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCYDC+ S F YLCC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKVVDECCSCCYDCTGSIFDYLCCCD 49

[Close]
BLAST of CaUC01G015960 vs. NCBI nr
Match: KAB2002226.1 (hypothetical protein ES319_D11G051800v1 [Gossypium barbadense] >KJB40248.1 hypothetical protein B456_007G053400 [Gossypium raimondii] >TYG43882.1 hypothetical protein ES288_D11G054300v1 [Gossypium darwinii] >KAB2002227.1 hypothetical protein ES319_D11G051800v1 [Gossypium barbadense] >TYG43883.1 hypothetical protein ES288_D11G054300v1 [Gossypium darwinii])

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCY+C+ S F YLCC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKAVDECCSCCYECTGSIFDYLCCCD 49

[Close]
BLAST of CaUC01G015960 vs. NCBI nr
Match: TYH99264.1 (hypothetical protein ES332_A11G055200v1 [Gossypium tomentosum])

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCYDC+ S F Y+CC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKVVDECCSCCYDCTGSIFDYICCCD 49

[Close]
BLAST of CaUC01G015960 vs. NCBI nr
Match: MBA0831373.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCY+C+ S F YLCC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKVVDECCSCCYECTGSMFDYLCCCD 49

[Close]
BLAST of CaUC01G015960 vs. ExPASy TrEMBL
Match: A0A061DG55 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000563 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          MEAPA Q+IE S+ N  VEEDE+DK V+ECCSCCYDC+E+ F YLCC++
Sbjct: 1  MEAPATQSIETSTNNFQVEEDEQDKAVDECCSCCYDCTETCFDYLCCFN 49

[Close]
BLAST of CaUC01G015960 vs. ExPASy TrEMBL
Match: A0A5D2X2P5 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A11G053500v1 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.6e-10
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCYDC+ S F YLCC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKVVDECCSCCYDCTGSIFDYLCCCD 49

[Close]
BLAST of CaUC01G015960 vs. ExPASy TrEMBL
Match: A0A5D2AHR7 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D11G054300v1 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCY+C+ S F YLCC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKAVDECCSCCYECTGSIFDYLCCCD 49

[Close]
BLAST of CaUC01G015960 vs. ExPASy TrEMBL
Match: A0A5J5P760 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G051800v1 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCY+C+ S F YLCC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKAVDECCSCCYECTGSIFDYLCCCD 49

[Close]
BLAST of CaUC01G015960 vs. ExPASy TrEMBL
Match: A0A0D2QLX2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G053400 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MEAPAPQAIEISSKNLGVEEDEEDKGVNECCSCCYDCSESWFHYLCCWD 50
          ME PA Q+IE S+K+  VEEDE+DK V+ECCSCCY+C+ S F YLCC D
Sbjct: 1  MEPPATQSIETSTKSFQVEEDEQDKAVDECCSCCYECTGSIFDYLCCCD 49

The following BLAST results are available for this feature:
BLAST of CaUC01G015960 vs. NCBI nr
Match NameE-valueIdentityDescription
EOX91334.11.1e-1067.35Uncharacterized protein TCM_000563 [Theobroma cacao][more]
KAG4173228.12.0e-0967.35hypothetical protein ERO13_A11G046000v2 [Gossypium hirsutum] >TYJ08130.1 hypothe... [more]
KAB2002226.12.6e-0965.31hypothetical protein ES319_D11G051800v1 [Gossypium barbadense] >KJB40248.1 hypot... [more]
TYH99264.13.4e-0965.31hypothetical protein ES332_A11G055200v1 [Gossypium tomentosum][more]
MBA0831373.13.4e-0965.31hypothetical protein [Gossypium armourianum][more]
BLAST of CaUC01G015960 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G015960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A061DG555.1e-1167.35Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000563 PE=4 SV=1[more]
A0A5D2X2P59.6e-1067.35Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A11G053500v1 P... [more]
A0A5D2AHR71.3e-0965.31Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D11G054300v1 PE=... [more]
A0A5J5P7601.3e-0965.31Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G051800v1 PE... [more]
A0A0D2QLX21.3e-0965.31Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G053400 PE=4 ... [more]
BLAST of CaUC01G015960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G015960.1CaUC01G015960.1mRNA