CaUC01G011900 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G011900
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProtein transport protein sec24
LocationCiama_Chr01: 21514863 .. 21516623 (+)
RNA-Seq ExpressionCaUC01G011900
SyntenyCaUC01G011900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTTGTACTGCTGTGGGGACCATGGGAGTGAGAGTAGGGGCTGGGGGAAATCAGTGTTGGTGTGGAGAATTTTGGCTGAGGCTAAAGGTGGAGAGAATTCCAGCACTCTCAAAATTGCTGGAGAAGTTATCTTTGTTCTTGTTATCTACTTCCACTTTGTTTTGCGTTGCTGAACTTGAGTCTTCTGTTTTCTTGTATTCAGACATTGTGTGTTGGTATTATCAAATATATTGTGTCACAGAGGCATTGCTCTGTGGCTTGGCATTGTCTTTGTTAGGTTTACTGTTTGCAGGTGACCGGATACCTAACAAAAACCCACCTGAAGATTCAACAGACCATCTTCGAGAGTCATTAGAATTAATTGTTGCTGAAGAAAGACTCATCATAAGGGCTTGAAAATCAATAATTTCTTCATCCTTGAATTATCTTCTAAAAATGATATTCCATGAAGAAGTTGAAGCATCCCACTATGAAGAAGCCAAACCTTCTGGATTTAAGTAATAGGAAACAAACGGGGAAAACATACCTTTAAAGGGGAGTTGTCAATCCAAGGATCAAGCCAAAAGAATATTCGGCTATCACTTCCCAAAGAAAAGTGTGCAAATGACTTCATTTCTTCCAAATGTTAGAAATACTCACCCAAAGGCTGCAAAGACTTGCACTGTTTCTTCCAATATGTCAATTAAAATCATCTGAACAATGGATGCTGATAATTACCTTCCTCCAGAAGGCATTAGGTTCTTGAATAAACCTCCAACTCCACATTGTAATTAGGGCCAGATTTCTGTGTTTTAATGCTCCAATGTCGAGCCCCCATGGAGTTGAGCTTTGGAGGGTAATATTCCATCTCACCAAATAATTTACTTTGCTGCCTTACTTTCTTTCCCAGGAAAAAGACTGTAAAATTCGCCCAAGCTCTAAACTGACCATTGAAGGCATGAGAAAAATAGACATGTAATTCAAAGGGATGCATGAAAGGGCCGACTTGCAAAGAGTCAAATGTCCACCTCTAGATAAGGTGAATCTTTTCCTTCTCTCTATCTTCTTTTGAATCTTGTCAAGAACAGGCTGCCAAAAGGAGATCTTTTTGGCATTCCACCAAGAGGAAGGCCAAGATAATCCTAAAGTATTAATGCGTTGGACAGAAGTGCTGGGTGTTCACAAGCATGCAGTATTATTTCCCTCAGCAGTAGGAGGGTCCTAATGCAAATACTTTGTTGTCAACTCAACTATTCGTCTGTTCTTATTTTATTGGTCTGTGGGTCTTTTCCACCTTTACTGGAACTATCCTGAAAATTTCCCTGCCATGATTTACAAAATTATACTAACAACGTACGTCAGTTCAATATTATGTCTCTTAACTTGGAGATTCATAGCTTAGGAGTGGTCCATTTAGTCTAGGTTTATGGAAAAATGTGCACAAAGCCAATTTTTCTTCCAATTTCGTTGAAGTTCATGTTCACTTTGCAAATAAATTAATTCACCTTTGGCCACATTGACTTTTGCCAGCTACTTGTTCTTGCATAATATTTTAGATTTATCCATCCTGTTAAACATTTTTATGGTGTTTATCAGCTTAATACTACTAATCATTAGACTATGATCTTATGCAGGCACGCTCCTGGGTTCCCCATTCTGCAGATTGCTTTCCAATATACTGTTGTTGTGCCTCCCGAAGAGCTTTCTAGTTCTGTTTCATCTAGTAGGTATATCTACAGATACAAAAGACTTTCGATTTTAAGTTTTCCTTCTTAG

mRNA sequence

ATGGTTGTTTGTACTGCTGTGGGGACCATGGGAGTGAGAGTAGGGGCTGGGGGAAATCAGTGTTGGTGTGGAGAATTTTGGCTGAGGCTAAAGGTGGAGAGAATTCCAGCACTCTCAAAATTGCTGGAGAAGTTATCTTTGTTCTTGTTATCTACTTCCACTTTGTTTTGCGTTGCTGAACTTGAGTCTTCTGTTTTCTTGTATTCAGACATTGTGTGTTGGCACGCTCCTGGGTTCCCCATTCTGCAGATTGCTTTCCAATATACTGTTGTTGTGCCTCCCGAAGAGCTTTCTAGTTCTGTTTCATCTAGTAGGTATATCTACAGATACAAAAGACTTTCGATTTTAAGTTTTCCTTCTTAG

Coding sequence (CDS)

ATGGTTGTTTGTACTGCTGTGGGGACCATGGGAGTGAGAGTAGGGGCTGGGGGAAATCAGTGTTGGTGTGGAGAATTTTGGCTGAGGCTAAAGGTGGAGAGAATTCCAGCACTCTCAAAATTGCTGGAGAAGTTATCTTTGTTCTTGTTATCTACTTCCACTTTGTTTTGCGTTGCTGAACTTGAGTCTTCTGTTTTCTTGTATTCAGACATTGTGTGTTGGCACGCTCCTGGGTTCCCCATTCTGCAGATTGCTTTCCAATATACTGTTGTTGTGCCTCCCGAAGAGCTTTCTAGTTCTGTTTCATCTAGTAGGTATATCTACAGATACAAAAGACTTTCGATTTTAAGTTTTCCTTCTTAG

Protein sequence

MVVCTAVGTMGVRVGAGGNQCWCGEFWLRLKVERIPALSKLLEKLSLFLLSTSTLFCVAELESSVFLYSDIVCWHAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKRLSILSFPS
Homology
[Close]
BLAST of CaUC01G011900 vs. NCBI nr
Match: TYK31051.1 (protein transport protein sec24 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 74  WHAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           WHAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 39  WHAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 77

[Close]
BLAST of CaUC01G011900 vs. NCBI nr
Match: KAA0035473.1 (protein transport protein SEC24 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 74  WHAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           WHAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 39  WHAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 77

[Close]
BLAST of CaUC01G011900 vs. NCBI nr
Match: XP_038894285.1 (protein transport protein sec24 [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-07
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 75  HAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           HAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 437 HAPGFPIVQIAFQYTVVVPPEELSSSISSSRTEHSLKR 474

[Close]
BLAST of CaUC01G011900 vs. NCBI nr
Match: XP_008461390.1 (PREDICTED: protein transport protein SEC24 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 75  HAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           HAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 437 HAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 474

[Close]
BLAST of CaUC01G011900 vs. NCBI nr
Match: XP_004139490.1 (protein transport protein sec24 [Cucumis sativus] >KAE8652809.1 hypothetical protein Csa_022840 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 75  HAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           HAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 437 HAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 474

[Close]
BLAST of CaUC01G011900 vs. ExPASy TrEMBL
Match: A0A5A7SY28 (Protein transport protein SEC24 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001200 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 74  WHAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           WHAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 39  WHAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 77

[Close]
BLAST of CaUC01G011900 vs. ExPASy TrEMBL
Match: A0A5D3E625 (Protein transport protein sec24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003090 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 74  WHAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           WHAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 39  WHAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 77

[Close]
BLAST of CaUC01G011900 vs. ExPASy TrEMBL
Match: A0A0A0LVF2 (Sec23_helical domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G164680 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-08
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 71  IVCWHAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           I+C HAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 2   ILCRHAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 43

[Close]
BLAST of CaUC01G011900 vs. ExPASy TrEMBL
Match: A0A1S3CEA2 (protein transport protein SEC24 OS=Cucumis melo OX=3656 GN=LOC103499983 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.8e-07
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 75  HAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           HAPGFPI+QIAFQYTVVVPPEELSSS+SSSR  +  KR
Sbjct: 437 HAPGFPIVQIAFQYTVVVPPEELSSSLSSSRTGHSLKR 474

[Close]
BLAST of CaUC01G011900 vs. ExPASy TrEMBL
Match: A0A6J1HVN4 (protein transport protein sec24 OS=Cucurbita maxima OX=3661 GN=LOC111466573 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 75  HAPGFPILQIAFQYTVVVPPEELSSSVSSSRYIYRYKR 113
           HAPG PI+QIAFQYTVVVPPEELSSSVSSSR  +  KR
Sbjct: 437 HAPGLPIVQIAFQYTVVVPPEELSSSVSSSRTEHSLKR 474

[Close]
BLAST of CaUC01G011900 vs. TAIR 10
Match: AT2G27460.1 (sec23/sec24 transport family protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.9e-04
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 75  HAPGFPILQIAFQYTVVVPPEELSSSVSSS 105
           H+   P++QIAFQYTVVVPPE LS+S  SS
Sbjct: 437 HSGEQPVVQIAFQYTVVVPPEGLSNSEMSS 466

The following BLAST results are available for this feature:
BLAST of CaUC01G011900 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK31051.11.3e-0782.05protein transport protein sec24 [Cucumis melo var. makuwa][more]
KAA0035473.11.3e-0782.05protein transport protein SEC24 [Cucumis melo var. makuwa][more]
XP_038894285.18.1e-0781.58protein transport protein sec24 [Benincasa hispida][more]
XP_008461390.11.8e-0681.58PREDICTED: protein transport protein SEC24 [Cucumis melo][more]
XP_004139490.11.8e-0681.58protein transport protein sec24 [Cucumis sativus] >KAE8652809.1 hypothetical pro... [more]
BLAST of CaUC01G011900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G011900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SY286.1e-0882.05Protein transport protein SEC24 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3E6256.1e-0882.05Protein transport protein sec24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A0A0LVF27.9e-0878.57Sec23_helical domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G1646... [more]
A0A1S3CEA28.8e-0781.58protein transport protein SEC24 OS=Cucumis melo OX=3656 GN=LOC103499983 PE=4 SV=... [more]
A0A6J1HVN41.5e-0681.58protein transport protein sec24 OS=Cucurbita maxima OX=3661 GN=LOC111466573 PE=4... [more]
BLAST of CaUC01G011900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27460.16.9e-0466.67sec23/sec24 transport family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G011900.1CaUC01G011900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007029 endoplasmic reticulum organization
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0080119 ER body organization
biological_process GO:0007030 Golgi organization
biological_process GO:0006886 intracellular protein transport
biological_process GO:0048232 male gamete generation
biological_process GO:0032876 negative regulation of DNA endoreduplication
biological_process GO:0008361 regulation of cell size
cellular_component GO:0030127 COPII vesicle coat
molecular_function GO:0008270 zinc ion binding