CaUC01G006850 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G006850
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionzf-RVT domain-containing protein
LocationCiama_Chr01: 7585123 .. 7585452 (+)
RNA-Seq ExpressionCaUC01G006850
SyntenyCaUC01G006850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATTGGAATTCAACCATATGGTAGTCTAAAGCCAAAGAGAATAAACATTCGTTTATGGATTTTGATTAGTGGCAACCTTAATACATCAGATGTTTTGCAGAAGAAATTGCCATCTAATTGCATTATGCCGTCTATTTGCCCTTCATGTCTAAAGAATGAGGATAATCTTGATTATGTTTTCTTTGATTGCTCTTATGCCAATCTGATGTCAAATGTTGGCAGCCCAGTGGGTCTTCTCCAATATCTTCAGAAGCATACTTTCAATTTCTTTATGGCTCTCTCATTAATTCCAAAACGAAGTTGCTTTGGAATAATGGAGTTATAG

mRNA sequence

ATGGTAATTGGAATTCAACCATATGGTAGTCTAAAGCCAAAGAGAATAAACATTCGTTTATGGATTTTGATTAGTGGCAACCTTAATACATCAGATGTTTTGCAGAAGAAATTGCCATCTAATTGCATTATGCCGTCTATTTGCCCTTCATGTCTAAAGAATGAGGATAATCTTGATTATGTTTTCTTTGATTGCTCTTATGCCAATCTGATGTCAAATGTTGGCAGCCCAGTGGGTCTTCTCCAATATCTTCAGAAGCATACTTTCAATTTCTTTATGGCTCTCTCATTAATTCCAAAACGAAGTTGCTTTGGAATAATGGAGTTATAG

Coding sequence (CDS)

ATGGTAATTGGAATTCAACCATATGGTAGTCTAAAGCCAAAGAGAATAAACATTCGTTTATGGATTTTGATTAGTGGCAACCTTAATACATCAGATGTTTTGCAGAAGAAATTGCCATCTAATTGCATTATGCCGTCTATTTGCCCTTCATGTCTAAAGAATGAGGATAATCTTGATTATGTTTTCTTTGATTGCTCTTATGCCAATCTGATGTCAAATGTTGGCAGCCCAGTGGGTCTTCTCCAATATCTTCAGAAGCATACTTTCAATTTCTTTATGGCTCTCTCATTAATTCCAAAACGAAGTTGCTTTGGAATAATGGAGTTATAG

Protein sequence

MVIGIQPYGSLKPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMSNVGSPVGLLQYLQKHTFNFFMALSLIPKRSCFGIMEL
Homology
BLAST of CaUC01G006850 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-08
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 13 PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMS 72
          P+R+N+  WIL  G LNT+D++QKK PS+ ++PS C  C K+ ++ D++FF C +A+   
Sbjct: 38 PRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCYFASKCW 97

Query: 73 NV 75
          N+
Sbjct: 98 NL 99

BLAST of CaUC01G006850 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 13  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYAN 70
           P+R+NI +WI++ G LN ++VLQKK P+  + P++CP CL + +   ++FF C Y++
Sbjct: 153 PRRVNILIWIMLFGQLNVAEVLQKKQPTPSLSPTVCPFCLHHSEVSLHLFFTCPYSS 209

BLAST of CaUC01G006850 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 13  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDC 66
           P+RINI +WI++   +N+S++LQKK P N + PSICP CLK   NL ++F  C
Sbjct: 223 PRRINILIWIMVFRFVNSSEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYC 274

BLAST of CaUC01G006850 vs. NCBI nr
Match: VVA31005.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 13  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA 69
           P +I   +W+  +GN+NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Sbjct: 70  PPKIQFFVWLAANGNINTCDSIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYS 125

BLAST of CaUC01G006850 vs. NCBI nr
Match: BBN69274.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 0

Query: 7   PYGSL----KPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVF 66
           PY S+     P +I   +W+  +G +NT D +Q++ P  C+ PS C  C +N +N+D++F
Sbjct: 802 PYRSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVFCKENAENIDHLF 861

Query: 67  FDCSYA 69
             CSY+
Sbjct: 862 IHCSYS 867

BLAST of CaUC01G006850 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 13 PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMS 72
          P+R+N+  WIL  G LNT+D++QKK PS+ ++PS C  C K+ ++ D++FF C +A+   
Sbjct: 38 PRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCYFASKCW 97

Query: 73 NV 75
          N+
Sbjct: 98 NL 99

BLAST of CaUC01G006850 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 13  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDC 66
           P+RINI +WI++   +N+S++LQKK P N + PSICP CLK   NL ++F  C
Sbjct: 223 PRRINILIWIMVFRFVNSSEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYC 274

BLAST of CaUC01G006850 vs. ExPASy TrEMBL
Match: A0A5E4FU23 (zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035086 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 13  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA 69
           P +I   +W+  +GN+NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Sbjct: 70  PPKIQFFVWLAANGNINTCDSIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYS 125

BLAST of CaUC01G006850 vs. ExPASy TrEMBL
Match: A0A5H2XQW2 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 0

Query: 7   PYGSL----KPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVF 66
           PY S+     P +I   +W+  +G +NT D +Q++ P  C+ PS C  C +N +N+D++F
Sbjct: 802 PYRSIWKAKTPPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVFCKENAENIDHLF 861

Query: 67  FDCSYA 69
             CSY+
Sbjct: 862 IHCSYS 867

BLAST of CaUC01G006850 vs. ExPASy TrEMBL
Match: M5W794 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016462mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 21/56 (37.50%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 13  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA 69
           P +I   +W+ ++G +NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Sbjct: 864 PPKIQFFVWLAVNGRINTCDCIQRRQPKMCLYPSWCVLCKENAENIDHLFIHCSYS 919

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153214.13.9e-0843.55uncharacterized protein LOC111020765 [Momordica charantia][more]
XP_038903695.11.6e-0642.11uncharacterized protein LOC120090219 [Benincasa hispida][more]
TYK21876.18.2e-0650.94hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa][more]
VVA31005.11.1e-0539.29Hypothetical predicted protein, partial [Prunus dulcis][more]
BBN69274.11.4e-0536.36TatD related DNase [Prunus dulcis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DIE21.9e-0843.55uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5D3DE604.0e-0650.94zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5E4FU235.2e-0639.29zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2... [more]
A0A5H2XQW26.7e-0636.36TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1[more]
M5W7946.7e-0637.50Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G006850.1CaUC01G006850.1mRNA