CaUC01G002760 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G002760
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
LocationCiama_Chr01: 2810944 .. 2812207 (+)
RNA-Seq ExpressionCaUC01G002760
SyntenyCaUC01G002760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCTGATACCCTCCCTATCACAACGATCTGAGTTCCCCAATTAGCATCTTCCCAAGTCTCTCCTATAGTCATTTCAGCTTCTCCAAGCAAGCTCTTGCTCTGTTCTACAAAAGAAATCAAATGCCCCGACTCCGAGAGCCCGTGCGGTTGCTGAGAAGGTTCCTTGTACAATTTCTTCCATTGAAGCTTTATCAAGCAGCTTCCATAACTTGAATCAGGCAGTCTCCCAAAAGTCAAGGTGGAACCATCTGAAGAAGCCATAATATCTGTATTGATCAAGTTGGCCTTCATCCTACACTCTAGCAATAGGAGAAAATGGAGGATTGAACAAATATGGTGGCGGTGTTTCTTTCAACATTCTTGTTTCTCTTTTCTTCTCCTCCATTGTGACTGCGTCAATCAAGAATTTTACTTCCTCTTCGAGAAGCACCTTTAAGGAATTGCAATGCTGCAACTCTTTGGTTTCCTCTACCTGGACCGCAGTGCAGGCTTCAGTCGCATGTAAAATAGCAACACAAATGGAGAATGCTTGCAATGTTGATAAACGCGCATGAAAATCAACAGCATATTGTCCATCTTTGACAACATTCATGGTTAATGCTGGAGTGGGATCCTTTACTCCCTGTATCCACATAAAAAAAGCAAGCACTACTATGAGAATATTTCTTTTGATCAATTTACTGATTGCATCAAAGAATGCTTAATAATAGTTTGGCTAAAACTCAAATTCAGCATCTGATAAAAAGTTAAGTCAGCAATCAGGTCTTCATCGAAAAACCTCTGCCAGCACACAAACACCTTATACTTTCTTCTGTGATATGCTTATTATCAATAATGTTCTATTTCTTAGCATGAAAAATGCGTAAGTTAACCATTTATTGCAATTGAACATTGTCCCATTGAATGCACATGAAAGGCATCTGAAAGTCAGTCCAGCGCCTTGAGCTTGTATTTTATGATCGTTATCAAAATTTCCATATGAAGCATCATTCCAGAATTATAATTGCCAATTATCTGTAACTCATAGAAAGCTTACCTGATGAAAAAGCTCAAATGTCTGTTTCCCCTTGTGTGCTTGATTCTCAGAACAGTGGCTACTGTGGGTGCCCAAAATTAATAGAGGACAACCCATGTCCCAACCGCCGCAGTCACAACCACCTCCGAACCTCCATCGATCGAGTAATGTAGAAGGGCCGTGGCTTTCAACAGTTGGCAAACCATGGTTTCCAATGGGAATTACCACCTTCAGAGTTTCTTGA

mRNA sequence

ATGGCAAGCTCTTGCTCTGTTCTACAAAAGAAATCAAATGCCCCGACTCCGAGAGCCCGTGCGGTTGCTGAGAAGGTTCCTTGTACAATTTCTTCCATTGAAGCTTTATCAAGCAGCTTCCATAACTTGAATCAGGCAGTCTCCCAAAAGTCAAGTTGGCCTTCATCCTACACTCTAGCAATAGGAGAAAATGGAGGATTGAACAAATATGGTGGCGGTGTTTCTTTCAACATTCTTGTTTCTCTTTTCTTCTCCTCCATTGTGACTGCGTCAATCAAGAATTTTACTTCCTCTTCGAGAAGCACCTTTAAGGAATTGCAATGCTGCAACTCTTTGGTTTCCTCTACCTGGACCGCAGTGCAGGCTTCAGTCGCATGTAAAATAGCAACACAAATGGAGAATGCTTGCAATTGGCTACTGTGGGTGCCCAAAATTAATAGAGGACAACCCATGTCCCAACCGCCGCAGTCACAACCACCTCCGAACCTCCATCGATCGAGTAATGTAGAAGGGCCGTGGCTTTCAACAGTTGGCAAACCATGGTTTCCAATGGGAATTACCACCTTCAGAGTTTCTTGA

Coding sequence (CDS)

ATGGCAAGCTCTTGCTCTGTTCTACAAAAGAAATCAAATGCCCCGACTCCGAGAGCCCGTGCGGTTGCTGAGAAGGTTCCTTGTACAATTTCTTCCATTGAAGCTTTATCAAGCAGCTTCCATAACTTGAATCAGGCAGTCTCCCAAAAGTCAAGTTGGCCTTCATCCTACACTCTAGCAATAGGAGAAAATGGAGGATTGAACAAATATGGTGGCGGTGTTTCTTTCAACATTCTTGTTTCTCTTTTCTTCTCCTCCATTGTGACTGCGTCAATCAAGAATTTTACTTCCTCTTCGAGAAGCACCTTTAAGGAATTGCAATGCTGCAACTCTTTGGTTTCCTCTACCTGGACCGCAGTGCAGGCTTCAGTCGCATGTAAAATAGCAACACAAATGGAGAATGCTTGCAATTGGCTACTGTGGGTGCCCAAAATTAATAGAGGACAACCCATGTCCCAACCGCCGCAGTCACAACCACCTCCGAACCTCCATCGATCGAGTAATGTAGAAGGGCCGTGGCTTTCAACAGTTGGCAAACCATGGTTTCCAATGGGAATTACCACCTTCAGAGTTTCTTGA

Protein sequence

MASSCSVLQKKSNAPTPRARAVAEKVPCTISSIEALSSSFHNLNQAVSQKSSWPSSYTLAIGENGGLNKYGGGVSFNILVSLFFSSIVTASIKNFTSSSRSTFKELQCCNSLVSSTWTAVQASVACKIATQMENACNWLLWVPKINRGQPMSQPPQSQPPPNLHRSSNVEGPWLSTVGKPWFPMGITTFRVS
Homology
[Close]
BLAST of CaUC01G002760 vs. NCBI nr
Match: GAU12314.1 (hypothetical protein TSUD_252650 [Trifolium subterraneum])

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 151 MSQPPQSQPPPNLHRSSNVEGPWLSTVGKPW 182
           MSQPPQSQPPP  HRSSN EGP LS +GKPW
Sbjct: 1   MSQPPQSQPPPCFHRSSNDEGPSLSPLGKPW 31

[Close]
BLAST of CaUC01G002760 vs. ExPASy TrEMBL
Match: A0A2C9WI42 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G060800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.1e-06
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 82  LFFSSIVTASIKNFTSSSRSTFKELQCCNSLVSSTWTAVQASVACKIATQMENACNW 139
           LFFSS VT SIKN  SSS S F EL C N L+ S   A++ASV C  ATQ ENACN+
Sbjct: 14  LFFSSSVTVSIKNCISSSISAFSELPCTNCLLLSFPIALEASVPCNAATQTENACNF 70

[Close]
BLAST of CaUC01G002760 vs. ExPASy TrEMBL
Match: A0A5A7PL82 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Striga asiatica OX=4170 GN=STAS_09184 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 0 

Query: 119 AVQASVACKIATQMENACNWLLWVPKINRGQPMSQPPQSQPPPNLHRSSNVEGPWLSTVG 178
           A  +S  C+++T   ++      + K +RG  +S PPQS PPP  H S+  EGP  S  G
Sbjct: 21  ATGSSTGCRLSTSGCSSQIRKFGLTKTSRGHAISHPPQSHPPPIRHLSNRGEGPRFSPPG 80

Query: 179 KPWFPMGITT 189
           + WFP G TT
Sbjct: 81  RLWFPAGTTT 90

The following BLAST results are available for this feature:
BLAST of CaUC01G002760 vs. NCBI nr
Match NameE-valueIdentityDescription
GAU12314.14.6e-0480.65hypothetical protein TSUD_252650 [Trifolium subterraneum][more]
BLAST of CaUC01G002760 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G002760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2C9WI429.1e-0661.40Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G060800 PE=4 SV=... [more]
A0A5A7PL825.0e-0440.002-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Strig... [more]
BLAST of CaUC01G002760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G002760.1CaUC01G002760.1mRNA