CSPI07G20810 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G20810
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ran BP2/NZF zinc finger-like superfamily protein
Location	Chr7: 17905948 .. 17906527 (-)
RNA-Seq Expression	CSPI07G20810
Synteny	CSPI07G20810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTATGCAAATGACAATTACTTTTATCATTCTAAAAGAAACCTTCGTGCGTTATTCTTTTGTAATTACTCCCTCAAATATAGGACGGTATGTGGTTAATGAAACTTAGTTTTGCAGGTGGTCGGAGGAATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGACTGCTGTCAACGGTGTGGGGAATTCAAATTAGGAGGGGGACCTGAATTAGGGGTGTTTTCCAGCAGATCGGGAAGGTCGTCCTACGGCGGAGGAGTTTCTTATTCGCCGGGATCTGACGTCCGCCCCGGTGACTGGTACTGCGGAGTGGGCAACTGTGGGACACATAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGACGAGTCAGCTGCATCCGCGACTGCGGCGGGAGGAAGTGGGTTTGATTTTGATGCGACGTGTCGCGCATTCAGAAGCTTTGGATTTGGAAGTAGTAATGCCACGTCACGTGGTGCCTCCTCTCCTTGGATGTCTGGTGATTGGATTTGTTCCAGGTTGGATTTTCAAACTCTTTAA

mRNA sequence

GAATTATGCAAATGACAATTACTTTTATCATTCTAAAAGAAACCTTCGTGCGTTATTCTTTTGTAATTACTCCCTCAAATATAGGACGGTATGTGGTTAATGAAACTTAGTTTTGCAGGTGGTCGGAGGAATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGACTGCTGTCAACGGTGTGGGGAATTCAAATTAGGAGGGGGACCTGAATTAGGGGTGTTTTCCAGCAGATCGGGAAGGTCGTCCTACGGCGGAGGAGTTTCTTATTCGCCGGGATCTGACGTCCGCCCCGGTGACTGGTACTGCGGAGTGGGCAACTGTGGGACACATAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGACGAGTCAGCTGCATCCGCGACTGCGGCGGGAGGAAGTGGGTTTGATTTTGATGCGACGTGTCGCGCATTCAGAAGCTTTGGATTTGGAAGTAGTAATGCCACGTCACGTGGTGCCTCCTCTCCTTGGATGTCTGGTGATTGGATTTGTTCCAGGTTGGATTTTCAAACTCTTTAA

Coding sequence (CDS)

ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGACTGCTGTCAACGGTGTGGGGAATTCAAATTAGGAGGGGGACCTGAATTAGGGGTGTTTTCCAGCAGATCGGGAAGGTCGTCCTACGGCGGAGGAGTTTCTTATTCGCCGGGATCTGACGTCCGCCCCGGTGACTGGTACTGCGGAGTGGGCAACTGTGGGACACATAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGACGAGTCAGCTGCATCCGCGACTGCGGCGGGAGGAAGTGGGTTTGATTTTGATGCGACGTGTCGCGCATTCAGAAGCTTTGGATTTGGAAGTAGTAATGCCACGTCACGTGGTGCCTCCTCTCCTTGGATGTCTGGTGATTGGATTTGTTCCAGGTTGGATTTTCAAACTCTTTAA

Protein sequence

MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRLDFQTL*

Homology

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BLAST of CSPI07G20810 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 47/144 (32.64%), Postives = 55/144 (38.19%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDCCQRC---GEFKLGGGPELGVFS------------SRSGRS 62
           RPGDWNC  C   NFQRR  C RC   G   +        FS            S    +
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  SYGGGVSYSP--------------------------GSDV--RPGDWYCGVGNCGTHNFA 104
           +YGG V +S                           G +V  R GDW CG   CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

[Close]

BLAST of CSPI07G20810 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.4e-04
Identity = 36/112 (32.14%), Postives = 44/112 (39.29%), Query Frame = 0


Query: 5   GDWNC--RSCQHLNFQRRDCCQRCGEFKL-------GGGPELGVFSSRSGRSSYGGGVSY 64
           GDW C  + C ++NF RR  C RCG  K         GG E+G   +   R  +      
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSA---- 70

Query: 65  SPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFD 108
                    DW C    CG  N+A RS C  C   K       T  GG GF+
Sbjct: 71  --------NDWQC--KTCGNVNWARRSECNMCNTPKYAKLEERTGYGG-GFN 107

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BLAST of CSPI07G20810 vs. ExPASy TrEMBL
Match: A0A0A0K718 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.8e-79
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD 60
           MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD 60

Query: 61  VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRSFGF 120
           VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGG GFDFDATCRAFRSFGF
Sbjct: 61  VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGGGFDFDATCRAFRSFGF 120

Query: 121 GSSNATSRGASSPWMSGDWICSR 144
           GSSNATSRGASSPW+SGDWICSR
Sbjct: 121 GSSNATSRGASSPWLSGDWICSR 143

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BLAST of CSPI07G20810 vs. ExPASy TrEMBL
Match: A0A5D3CJI6 (Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002200 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 128/147 (87.07%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGS 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGEFKLGGGPELGVFS R+GR SSYGGG++YSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGIAYSPGS 60

Query: 61  DVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT--AAGGSGFDFDATCRAFRS 120
           DVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAASAT    GG GFDFD TCRAFRS
Sbjct: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGFDFDVTCRAFRS 120

Query: 121 FGFGSSNATSRGASSPWMSGDWICSRL 145
           FG    NA+SRGA SPWMSGDWICSRL
Sbjct: 121 FG----NASSRGAPSPWMSGDWICSRL 143

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BLAST of CSPI07G20810 vs. ExPASy TrEMBL
Match: A0A6J1HKM2 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662 GN=LOC111464408 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 108/152 (71.05%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGE---------FKLGGGPELGVFSSRSGRSSYGG 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE         F  GGG   G   S S  SSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60

Query: 61  GVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDAT 120
               SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESA  ATAA G GFDFD  
Sbjct: 61  VA--SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESA--ATAARG-GFDFDVA 120

Query: 121 CRAFRSFGFGSSNATSRGASSPWMSGDWICSR 144
            R  RSFGFGS+   SRG SS W SGDWICSR
Sbjct: 121 PRGSRSFGFGSNG--SRGGSS-WKSGDWICSR 144

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BLAST of CSPI07G20810 vs. ExPASy TrEMBL
Match: A0A6J1DB61 (transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=3673 GN=LOC111018697 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.0e-45
Identity = 101/146 (69.18%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLG---GGPELGVFSSRSGRSSYGGGVSYSP 60
           MNRPGDW+CRSCQHLNFQRR+CCQRCG+ K G   GG    + + RS   S  GGV+ SP
Sbjct: 1   MNRPGDWHCRSCQHLNFQRRECCQRCGDSKFGVFAGGGGGRLATGRSSVPSSYGGVA-SP 60

Query: 61  GSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRS 120
           GSDVRPGDWYCGVGNCGTHNFA+RS+CFKCGAFKDESAA+   AGG GFDFD + RA R 
Sbjct: 61  GSDVRPGDWYCGVGNCGTHNFASRSSCFKCGAFKDESAAAGAGAGG-GFDFDMS-RASRG 120

Query: 121 FGFGSSNATSRGASSPWMSGDWICSR 144
           FGFG +NA+  G+S  W SGDWIC+R
Sbjct: 121 FGFG-TNASRAGSS--WKSGDWICTR 140

[Close]

BLAST of CSPI07G20810 vs. ExPASy TrEMBL
Match: A0A6J1KI84 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111494659 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 106/156 (67.95%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVF-------------SSRSGRS 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE +     +LGVF             SS S  S
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA--DLGVFGGGSRGRSISSSSSSSSSSS 60

Query: 61  SYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFD 120
           SYGG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESA  ATAA G GFD
Sbjct: 61  SYGGVA--SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESA--ATAARG-GFD 120

Query: 121 FDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR 144
            D   R  RSFGFG++   SRG SS W SGDWICSR
Sbjct: 121 SDVAPRGSRSFGFGTNG--SRGGSS-WKSGDWICSR 146

[Close]

BLAST of CSPI07G20810 vs. NCBI nr
Match: XP_031745273.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 5.8e-79
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD 60
           MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD 60

Query: 61  VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRSFGF 120
           VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGG GFDFDATCRAFRSFGF
Sbjct: 61  VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGGGFDFDATCRAFRSFGF 120

Query: 121 GSSNATSRGASSPWMSGDWICSR 144
           GSSNATSRGASSPW+SGDWICSR
Sbjct: 121 GSSNATSRGASSPWLSGDWICSR 143

[Close]

BLAST of CSPI07G20810 vs. NCBI nr
Match: KAE8646450.1 (hypothetical protein Csa_016580 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 7.6e-79
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD 60
           MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSD 60

Query: 61  VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRSFGF 120
           VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGG GFDFDATCRAFRSFGF
Sbjct: 61  VRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGGGFDFDATCRAFRSFGF 120

Query: 121 GSSNATSRGASSPWMSGDWICSRL 145
           GSSNATSRGASSPW+SGDWICS L
Sbjct: 121 GSSNATSRGASSPWLSGDWICSSL 144

[Close]

BLAST of CSPI07G20810 vs. NCBI nr
Match: KAA0058772.1 (transcription initiation factor TFIID subunit 15b-like [Cucumis melo var. makuwa] >TYK10566.1 transcription initiation factor TFIID subunit 15b-like [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 4.6e-68
Identity = 128/147 (87.07%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGS 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGEFKLGGGPELGVFS R+GR SSYGGG++YSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGIAYSPGS 60

Query: 61  DVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT--AAGGSGFDFDATCRAFRS 120
           DVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAASAT    GG GFDFD TCRAFRS
Sbjct: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGFDFDVTCRAFRS 120

Query: 121 FGFGSSNATSRGASSPWMSGDWICSRL 145
           FG    NA+SRGA SPWMSGDWICSRL
Sbjct: 121 FG----NASSRGAPSPWMSGDWICSRL 143

[Close]

BLAST of CSPI07G20810 vs. NCBI nr
Match: XP_038899251.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038899252.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-56
Identity = 120/146 (82.19%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR---SSYGGGVSYSP 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE KLG   ELGVF  R GR   SSY GGV+YSP
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGELKLGA--ELGVFGGR-GRAIPSSY-GGVAYSP 60

Query: 61  GSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRS 120
           GSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAA   AA G GFDFD TCR  RS
Sbjct: 61  GSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAA---AACGGGFDFDVTCRGSRS 120

Query: 121 FGFGSSNATSRGASSPWMSGDWICSR 144
           FGFGSSN   RG SS WMSGDWICSR
Sbjct: 121 FGFGSSNGL-RGGSS-WMSGDWICSR 137

[Close]

BLAST of CSPI07G20810 vs. NCBI nr
Match: XP_023514793.1 (uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 7.7e-47
Identity = 108/152 (71.05%), Postives = 112/152 (73.68%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGE---------FKLGGGPELGVFSSRSGRSSYGG 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE         F  GGG   G   S S  SSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60

Query: 61  GVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDAT 120
               SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESA  ATAAGG GFDFD  
Sbjct: 61  VA--SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESA--ATAAGG-GFDFDVA 120

Query: 121 CRAFRSFGFGSSNATSRGASSPWMSGDWICSR 144
            R  R+FGFGS+   SRG SS W SGDWICSR
Sbjct: 121 PRGSRTFGFGSNG--SRGGSS-WKSGDWICSR 144

[Close]

BLAST of CSPI07G20810 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.3e-39
Identity = 82/149 (55.03%), Postives = 95/149 (63.76%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLG----GGPELGVFSSRSGRSSYGGGVSYS 60
           M+RPGDWNCRSC HLNFQRRD CQRCG+ + G    GG + G F  R+  S++G    ++
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRA-MSAFG----FT 60

Query: 61  PGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAG-GSGFDFDATCRAF 120
            GSDVRPGDWYC VGNCGTHNFA+RSTCFKCG FKDE+ A     G G    FDA     
Sbjct: 61  TGSDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIM-- 120

Query: 121 RSFGFGSSNATSRGASSPWMSGDWICSRL 145
                  S     G  S W SGDWIC+R+
Sbjct: 121 ------RSRVPGNGGRSSWKSGDWICTRI 136

[Close]

BLAST of CSPI07G20810 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.0e-38
Identity = 83/146 (56.85%), Postives = 95/146 (65.07%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGG--GPELGVFSSRSGRSSYGGGVSYSPG 60
           MNRPGDWNCR C HLNFQRRD CQRC E + GG     L  F  R   SS+G    ++ G
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFG----FNTG 60

Query: 61  SDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRSF 120
            DVRPGDWYC +G+CGTHNFANRS+CFKCGA KDE + S+ AA     D +   R    F
Sbjct: 61  PDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRR-GLF 120

Query: 121 GFGSSNATSRGAS-SPWMSGDWICSR 144
           GFG S++   G   SPW SGDWIC R
Sbjct: 121 GFGGSSSGGGGTGRSPWKSGDWICPR 141

[Close]

BLAST of CSPI07G20810 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-18
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPG 64
           GDW C +CQH NF++R+ CQ+CG  K GG        +R               ++V  G
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNR---------------TEVMAG 65

Query: 65  DWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDATCRAFRSFGFGSSN 124
           DWYCG  NCG+HN+A+R++C++CG  K E       A              +   +G+  
Sbjct: 66  DWYCGALNCGSHNYASRTSCYRCGMIKVEYTEQYYGA--------------QMVAYGND- 113

Query: 125 ATSRGASSP--WMSGDWICSRL 145
               GA+ P  W +GDW+C R+
Sbjct: 126 ----GAACPPGWKTGDWVCPRV 113

[Close]

BLAST of CSPI07G20810 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.6e-04
Identity = 28/97 (28.87%), Postives = 38/97 (39.18%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVR 62
           + GDW C++C  LNF +   C RC +      P L                       + 
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKD-----KPTL---------------------RQIN 338

Query: 63  PGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT 100
           PG+W C   +C   NF   S C KC   K + AA+ T
Sbjct: 339 PGEWEC--ESCNYINFRRNSICLKCD-HKRQKAANVT 346

[Close]

BLAST of CSPI07G20810 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.6e-04
Identity = 28/97 (28.87%), Postives = 38/97 (39.18%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVR 62
           + GDW C++C  LNF +   C RC +      P L                       + 
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKD-----KPTL---------------------RQIN 338

Query: 63  PGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT 100
           PG+W C   +C   NF   S C KC   K + AA+ T
Sbjct: 339 PGEWEC--ESCNYINFRRNSICLKCD-HKRQKAANVT 346

The following BLAST results are available for this feature:

BLAST of CSPI07G20810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	2.5e-08	32.64	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q5ZLX5	6.4e-04	32.14	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]

BLAST of CSPI07G20810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K718	2.8e-79	98.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1	[more]
A0A5D3CJI6	2.2e-68	87.07	Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. maku...	[more]
A0A6J1HKM2	1.4e-46	71.05	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1DB61	2.0e-45	69.18	transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=...	[more]
A0A6J1KI84	1.7e-44	67.95	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CSPI07G20810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745273.1	5.8e-79	98.60	zinc finger Ran-binding domain-containing protein 2-like [Cucumis sativus]	[more]
KAE8646450.1	7.6e-79	97.92	hypothetical protein Csa_016580 [Cucumis sativus]	[more]
KAA0058772.1	4.6e-68	87.07	transcription initiation factor TFIID subunit 15b-like [Cucumis melo var. makuwa...	[more]
XP_038899251.1	2.4e-56	82.19	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03889...	[more]
XP_023514793.1	7.7e-47	71.05	uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo su...	[more]

BLAST of CSPI07G20810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	6.3e-39	55.03	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	7.0e-38	56.85	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	8.0e-18	33.80	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G70650.1	6.6e-04	28.87	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G70650.2	6.6e-04	28.87	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 0.13 score: 18.8 coord: 64..90 e-value: 1.7E-4 score: 30.9
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 62..89 e-value: 6.2E-6 score: 25.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 66..87
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 62..93 score: 9.834018
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 8.840303
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..31 e-value: 1.8E-7 score: 32.3 coord: 57..94 e-value: 1.3E-11 score: 45.6
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..145
None	No IPR available	PANTHER	PTHR23111:SF80	BNAA03G57490D PROTEIN	coord: 1..145
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..32
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 58..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G20810.1	CSPI07G20810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003743	translation initiation factor activity