CSPI07G19140 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G19140
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	Chr7: 16906592 .. 16908952 (-)
RNA-Seq Expression	CSPI07G19140
Synteny	CSPI07G19140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCTTAGAGTTTCAGTTTCATAGAGAAGAAAAAGAAAAACGATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCTGAGGGCGCCAAGAAGTTAATTCTTGAAACCCTAATTCTTTTCATCATCTCTTTAACTTCACGATCGATTTTGCTTTTCTTCTACATACACTACAACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGCAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCAGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGTAGGGGTTTTCTGTTAATCGGACGAGATGGTTTTTCTGGCGATTTTAATTAATTGTTTCGTTTTTGTTTATTAACATGTATTGATCTTTTTCAATGGCCTGAATAATTAGGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTCGGGTTAGTACTTCGATTGTTTTTCCATTGCTTAATTTTTGCTCTATTGCATGAATAGTATTATGAGCATTTTTTTAGCGCATTTTGCTGTTTGGTAATGACTGGTCGAAGTGCATTGCTTAATCAGTGTTATTGTTTGTTCTCATAGTAATCATTTATTTGAGATTGACTGATCGAATGAAAATTTGATCGATGGCAGGGCAGAACAAAAACGTGTACAGTAAATTTCGAATTATACCATTTAAGTTCTTTTTATGATGAAATGTTTGAAATCTGAACGTTATTTTGTATAATTGTCTTTGTCTTAGTCTTAGATGAATTAGGTGTTTCCTCTATTTTTCACTCGGTTCTTGGACTGGAGTTCATATAACCAATTTGCCTTATAGGAAGTGAAAACTTACTTGAATTCTTAAGCTCATTATCCTATTACAGTAACATTTTCCTTTTCTCCCAGAAAGGTCACGAATTCCTGGGGAGAGAACCCCGATTATAAATTTCTTGAGGATGGCAAATATTTTGCAGATACTGATTGGTTTTGAAAACTAACATTCTATGTAGCTTTATTATGGTCGTTGATTAAATTTCAATTATCCATTGAGTTCTGACGATGTTCTTTTATCATAATTATTTTATGTTTTAGATGTAATTTTTCTGCAGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATCTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGTAATGCTTTCACTCCCACTTGACTTTTTTTTTTTTTCTCTCTGCAATTGGAGTGAGGTGAGTAGGATTTGTTCTTATTCATTACGAGGGAATCCAATGATTCTCTGATTATTTTGCTCTAAAGCTTTACACCTATTTTCTTTTGTTTTTGCTCTTACATTATCAAACAATTGATCTTTTAGTACTAATGTGGAAATTTGAATATCCAACTTTCAGTACATATGACTATGCTCACTTGGGCTTTCAATGGTTGGTTTGAATCCATGATATTGTTAAATGTTCATATTACATTTAAACTCCAACACCGATGGGATATAGTTTATAGTACTAAGTTCATTTCAAATTATTTGAGGTTTTTGTTAAATGCCCTTTAACAATTTACCCCCCAAGTTCAAGTGAGTAGCCAACTCCATGTTCAAATTTAATAGTTTTAGTACTTTCAACTATTATAACATATAAATATATAATTAACTACAATATTATTACTTCAAGTCTCAATTTAAAAATTTCTTTTTATTGTTTTATGTTTATTATTTTCTACCCATTTCCTCTAAATTATTTTCGAGCTCAAAAACAAACTATCATAGTACATACTAAAATATTTTATACCGCAAACCTAACTTATTGTAGCCACTTACCTATAATGCATAGACTATAATATACAACTCAATGCTTCAAACATCCCTTGTTAGTTATTTTCTACCAAGTTTGGACAAAAAGTTAGTCTAAATTTATAAAAGGATTATAAAAGGAAGAAGAAAAAAAGAGAAGATAGTGGCATCATTATTATCAATTTATTATTTACATTTGTTATGCGCTTCATGCAGGGTGAGATTTCAAGGTTCTCGAGGGCCTATTAGTTACCCATCCAAGAAAACCAAGGGAAAGTTTGAGTTCAATAACGTCGAGTTGGGAATGGAATGCCAATGTTAAAATTTACGGCCACTTTTTAGCCTGGTTCCTTACGGCGGTGGGAGTTGGTTGTGTAAATGGAAGTTCAAATTTTCATCTAAAAAAGAGAAACCATTTTAGTTTAGTATTGATTTGAAATAAATATTTTGAACTGTGTATTCCATTTCAATAATAATTCACCATT

mRNA sequence

ATTTTCTTAGAGTTTCAGTTTCATAGAGAAGAAAAAGAAAAACGATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCTGAGGGCGCCAAGAAGTTAATTCTTGAAACCCTAATTCTTTTCATCATCTCTTTAACTTCACGATCGATTTTGCTTTTCTTCTACATACACTACAACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGCAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCAGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATCTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGGTGAGATTTCAAGGTTCTCGAGGGCCTATTAGTTACCCATCCAAGAAAACCAAGGGAAAGTTTGAGTTCAATAACGTCGAGTTGGGAATGGAATGCCAATGTTAAAATTTACGGCCACTTTTTAGCCTGGTTCCTTACGGCGGTGGGAGTTGGTTGTGTAAATGGAAGTTCAAATTTTCATCTAAAAAAGAGAAACCATTTTAGTTTAGTATTGATTTGAAATAAATATTTTGAACTGTGTATTCCATTTCAATAATAATTCACCATT

Coding sequence (CDS)

ATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCTGAGGGCGCCAAGAAGTTAATTCTTGAAACCCTAATTCTTTTCATCATCTCTTTAACTTCACGATCGATTTTGCTTTTCTTCTACATACACTACAACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGCAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCAGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATCTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGGTGAGATTTCAAGGTTCTCGAGGGCCTATTAG

Protein sequence

MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY*

Homology

[Close]

BLAST of CSPI07G19140 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-43
Identity = 91/162 (56.17%), Postives = 105/162 (64.81%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MN P+RYERFVVPEG KK                                          
Sbjct: 1   MNAPERYERFVVPEGTKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VR
Sbjct: 61  ----VSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           I T SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 121 IHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of CSPI07G19140 vs. ExPASy Swiss-Prot
Match: Q60SM4 (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae OX=6238 GN=rpb-11 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 43/98 (43.88%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 64  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQT 123
           ++  E+DTK+ NAA F + +EDHT+GN+L++QL +D  VLFAGY+ PHPL+++IL+R+QT
Sbjct: 17  KIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQT 76

Query: 124 ASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRA 162
            + ++P  A   AI DL  EL +L++ ++  I + +++
Sbjct: 77  TNATTPADALTTAITDLVGELSLLEHRIDSAIKKCTQS 114

[Close]

BLAST of CSPI07G19140 vs. ExPASy Swiss-Prot
Match: O08740 (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 64  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQT 123
           +++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT
Sbjct: 18  KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 77

Query: 124 ASQSSPMQAYNQAINDLDKELDVLKYELEGEI 156
               SP +A+  AI DL  EL +L+    G I
Sbjct: 78  TPDYSPQEAFTNAITDLISELSLLEERFRGAI 109

[Close]

BLAST of CSPI07G19140 vs. ExPASy Swiss-Prot
Match: Q9XVH6 (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans OX=6239 GN=rpb-11 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-20
Identity = 44/94 (46.81%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 68  ERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQS 127
           E+DTK+ NAA F + +EDHT+GN+L++QL +D  VLFAGY+ PHPL+++IL+RIQT + +
Sbjct: 21  EKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNT 80

Query: 128 SPMQAYNQAINDLDKELDVLKYELEGEISRFSRA 162
           +P  A   AI DL  EL +L++ ++  I + +++
Sbjct: 81  TPADALTTAITDLVGELSLLEHRIDAAIKKCTQS 114

[Close]

BLAST of CSPI07G19140 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 40/85 (47.06%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 64  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQT 123
           +++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT
Sbjct: 18  KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 77

Query: 124 ASQSSPMQAYNQAINDLDKELDVLK 149
               SP +A+  AI DL  EL +L+
Sbjct: 78  TPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of CSPI07G19140 vs. ExPASy TrEMBL
Match: A0A0A0K9R2 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G426580 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.9e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV
Sbjct: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
           EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR
Sbjct: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 162

[Close]

BLAST of CSPI07G19140 vs. ExPASy TrEMBL
Match: A0A1S3CFN3 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=3656 GN=LOC103499938 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.3e-52
Identity = 115/162 (70.99%), Postives = 115/162 (70.99%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR
Sbjct: 61  ----VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of CSPI07G19140 vs. ExPASy TrEMBL
Match: A0A6J1KX24 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 110/162 (67.90%), Postives = 113/162 (69.75%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVR
Sbjct: 61  ----VSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR+Y
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 116

[Close]

BLAST of CSPI07G19140 vs. ExPASy TrEMBL
Match: A0A6J1H8G6 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-49
Identity = 110/162 (67.90%), Postives = 112/162 (69.14%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVR
Sbjct: 61  ----VSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR Y
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of CSPI07G19140 vs. ExPASy TrEMBL
Match: A0A6J1DA06 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia OX=3673 GN=LOC111019017 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 107/162 (66.05%), Postives = 112/162 (69.14%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+R
Sbjct: 61  ----VSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           I TASQSSPMQAYNQA+NDLDKELD LK+ELE E+SRFSRAY
Sbjct: 121 IHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY 116

[Close]

BLAST of CSPI07G19140 vs. NCBI nr
Match: XP_031744367.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV
Sbjct: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
           EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR
Sbjct: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 162

[Close]

BLAST of CSPI07G19140 vs. NCBI nr
Match: XP_031744368.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-61
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV
Sbjct: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
           EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR
Sbjct: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120

Query: 121 I 122
           +
Sbjct: 121 M 121

[Close]

BLAST of CSPI07G19140 vs. NCBI nr
Match: XP_004135939.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus] >KAE8646398.1 hypothetical protein Csa_016830 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 3.9e-52
Identity = 116/162 (71.60%), Postives = 116/162 (71.60%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR
Sbjct: 61  ----VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116

[Close]

BLAST of CSPI07G19140 vs. NCBI nr
Match: XP_008461312.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-51
Identity = 115/162 (70.99%), Postives = 115/162 (70.99%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR
Sbjct: 61  ----VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of CSPI07G19140 vs. NCBI nr
Match: XP_038899336.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 7.3e-51
Identity = 114/162 (70.37%), Postives = 115/162 (70.99%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSYERDTKIMNAATFILEREDHTIG+ILRMQLHRDDNVLFAGYQLPHPLKYRILVR
Sbjct: 61  ----VSYERDTKIMNAATFILEREDHTIGHILRMQLHRDDNVLFAGYQLPHPLKYRILVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSR Y
Sbjct: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRNY 116

[Close]

BLAST of CSPI07G19140 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44
Identity = 91/162 (56.17%), Postives = 105/162 (64.81%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MN P+RYERFVVPEG KK                                          
Sbjct: 1   MNAPERYERFVVPEGTKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VR
Sbjct: 61  ----VSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR 116

Query: 121 IQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 163
           I T SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 121 IHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of CSPI07G19140 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 161.0 bits (406), Expect = 8.1e-40
Identity = 91/192 (47.40%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYNRLCYDFLFWTDVDFV 60
           MN P+RYERFVVPEG KK                                          
Sbjct: 1   MNAPERYERFVVPEGTKK------------------------------------------ 60

Query: 61  EHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR 120
               VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VR
Sbjct: 61  ----VSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR 120

Query: 121 ------------------------------IQTASQSSPMQAYNQAINDLDKELDVLKYE 163
                                         I T SQSSPMQAYNQAINDLDKELD LK +
Sbjct: 121 DPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQAINDLDKELDYLKNQ 146

The following BLAST results are available for this feature:

BLAST of CSPI07G19140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	2.0e-43	56.17	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q60SM4	1.4e-20	43.88	Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae...	[more]
O08740	1.8e-20	45.65	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j ...	[more]
Q9XVH6	3.1e-20	46.81	Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans ...	[more]
Q32P79	1.5e-19	47.06	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]

BLAST of CSPI07G19140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9R2	9.9e-86	100.00	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G426580...	[more]
A0A1S3CFN3	9.3e-52	70.99	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=365...	[more]
A0A6J1KX24	1.1e-49	67.90	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1H8G6	1.5e-49	67.90	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1DA06	1.3e-48	66.05	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia...	[more]

BLAST of CSPI07G19140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744367.1	2.0e-85	100.00	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]
XP_031744368.1	3.5e-61	99.17	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2 [Cucumis sativus...	[more]
XP_004135939.1	3.9e-52	71.60	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus...	[more]
XP_008461312.1	1.9e-51	70.99	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis me...	[more]
XP_038899336.1	7.3e-51	70.37	DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]	[more]

BLAST of CSPI07G19140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	1.4e-44	56.17	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	8.1e-40	47.40	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..150
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..156
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..156
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 77..148 e-value: 1.9E-24 score: 85.2
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..160 e-value: 3.5E-46 score: 157.7
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 64..158
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 81..112
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 64..148 e-value: 9.58379E-44 score: 138.109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G19140.1	CSPI07G19140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity