CSPI07G16880 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G16880
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBifunctional inhibitor/plant lipid transfer protein/seed storage helical domain containing protein
LocationChr7: 15432772 .. 15433221 (+)
RNA-Seq ExpressionCSPI07G16880
SyntenyCSPI07G16880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGATTCAAGATCCTTATACTTTCAGTAGTATTGTTCTTGACTCTGATTACTGACTCAGAGAGTCAATGGCAGCCACCGGGCGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTACGCTTGCAAACTATGCTTGTGCAACGTTGCCTTACGCCAAACTCCCGCCACCTCCGCCCCCATCATCATCACTCTCTAATAACCAAGATAGCCAAGGCTCTCCTGTCCACGGACACCATCACGGACACCATCACAGACACCACCACAAGATCCCTCTAACGCCAATAGAGGAGAATTGTTGCAAGTGGGTGCAGCAGGTGGATAGTGAATGTGTATGCGAGCTGTTGTCCCGATTGCCTGCTTTCTTAAAGAGGCCTATACATAACTTTTCCGTTACCATCGGTGGCTCATGTAATGCTACATACTGGTGCGGAGGAATGAAAATCTAA

mRNA sequence

ATGGGGAGATTCAAGATCCTTATACTTTCAGTAGTATTGTTCTTGACTCTGATTACTGACTCAGAGAGTCAATGGCAGCCACCGGGCGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTACGCTTGCAAACTATGCTTGTGCAACGTTGCCTTACGCCAAACTCCCGCCACCTCCGCCCCCATCATCATCACTCTCTAATAACCAAGATAGCCAAGGCTCTCCTGTCCACGGACACCATCACGGACACCATCACAGACACCACCACAAGATCCCTCTAACGCCAATAGAGGAGAATTGTTGCAAGTGGGTGCAGCAGGTGGATAGTGAATGTGTATGCGAGCTGTTGTCCCGATTGCCTGCTTTCTTAAAGAGGCCTATACATAACTTTTCCGTTACCATCGGTGGCTCATGTAATGCTACATACTGGTGCGGAGGAATGAAAATCTAA

Coding sequence (CDS)

ATGGGGAGATTCAAGATCCTTATACTTTCAGTAGTATTGTTCTTGACTCTGATTACTGACTCAGAGAGTCAATGGCAGCCACCGGGCGTTGCTCCTCGACCACTCTGCGCCTCCCAGATTACGCTTGCAAACTATGCTTGTGCAACGTTGCCTTACGCCAAACTCCCGCCACCTCCGCCCCCATCATCATCACTCTCTAATAACCAAGATAGCCAAGGCTCTCCTGTCCACGGACACCATCACGGACACCATCACAGACACCACCACAAGATCCCTCTAACGCCAATAGAGGAGAATTGTTGCAAGTGGGTGCAGCAGGTGGATAGTGAATGTGTATGCGAGCTGTTGTCCCGATTGCCTGCTTTCTTAAAGAGGCCTATACATAACTTTTCCGTTACCATCGGTGGCTCATGTAATGCTACATACTGGTGCGGAGGAATGAAAATCTAA

Protein sequence

MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVTIGGSCNATYWCGGMKI*
Homology
BLAST of CSPI07G16880 vs. ExPASy TrEMBL
Match: A0A0A0KAN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.1e-83
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60

Query: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120
           PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP
Sbjct: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120

Query: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 150
           AFLKRPIHNFSVTIGGSCNATYWCGGMKI
Sbjct: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 149

BLAST of CSPI07G16880 vs. ExPASy TrEMBL
Match: A0A5A7UTY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00120 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 116/128 (90.62%), Postives = 119/128 (92.97%), Query Frame = 0

Query: 24  QWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSSSLSNNQDSQGSPVHGHHHGH 83
           QWQPP VAPRPLCASQI LANYACATLPY+KL PPPPPSSSLS+N DSQGSPVH HHHGH
Sbjct: 84  QWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGSPVHTHHHGH 143

Query: 84  HHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVTIGG--SCNAT 143
           HHRHHHKIPL+PIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSV IGG  SCNAT
Sbjct: 144 HHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVIIGGSLSCNAT 203

Query: 144 YWCGGMKI 150
           Y CGGMKI
Sbjct: 204 YSCGGMKI 211

BLAST of CSPI07G16880 vs. ExPASy TrEMBL
Match: A0A0B2QE80 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007235 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.9e-33
Identity = 71/142 (50.00%), Postives = 91/142 (64.08%), Query Frame = 0

Query: 4   FKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSS 63
           F ++ L++ LFL ++   ESQ +P    PRPLCASQ  L NYAC+ LP++   PP  PS 
Sbjct: 4   FNLIALALTLFLAIVPKMESQIKPIPKTPRPLCASQFALVNYACSRLPFSPGVPPDSPSP 63

Query: 64  SLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFL 123
              NN     S  HGH HGH HRHH     TP E+NCC+W ++VD +CVCELL RLP FL
Sbjct: 64  DEENNNHHNRSHRHGHRHGHRHRHHQ----TPDEDNCCRWAKEVDHQCVCELLLRLPPFL 123

Query: 124 KRPIHNFSVTIGGSCNATYWCG 146
            RP H +++ +G SC+ TY CG
Sbjct: 124 IRPSHQYTLKVGASCDITYSCG 141

BLAST of CSPI07G16880 vs. ExPASy TrEMBL
Match: A0A1S3TMG4 (uncharacterized protein LOC106756858 OS=Vigna radiata var. radiata OX=3916 GN=LOC106756858 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.4e-32
Identity = 73/150 (48.67%), Postives = 94/150 (62.67%), Query Frame = 0

Query: 6   ILILSVVLFLTLITDSESQWQPPGVA----PRPLCASQITLANYACATLPY------AKL 65
           ++ L ++L LTL+T +ESQ +PP +     PRPLC SQ  L NYAC+ LP+      A  
Sbjct: 7   LITLPLLLLLTLVTKTESQIKPPLITVAKPPRPLCGSQFALVNYACSRLPFRHGAPPADS 66

Query: 66  PPPPPPSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCEL 125
           PPPP           S     H H HGH HRHHH+   TP E+NCC+W ++VDS+CVCEL
Sbjct: 67  PPPPDGEDGDGETHHSHSHHRHNHRHGHGHRHHHQ---TPEEDNCCRWAKEVDSQCVCEL 126

Query: 126 LSRLPAFLKRPIHNFSVTIGGSCNATYWCG 146
           L RLP FL RP+H +++ IG +CN TY CG
Sbjct: 127 LLRLPPFLVRPVHQYTLNIGDACNITYSCG 153

BLAST of CSPI07G16880 vs. ExPASy TrEMBL
Match: A0A2P5CXK7 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_115260 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 71/151 (47.02%), Postives = 96/151 (63.58%), Query Frame = 0

Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           M R K L  + +LFL L+   E +     V PRP+CASQ  LANYAC+ +PY+ LPPP P
Sbjct: 1   MERVKTLTQTFLLFLLLVLKIEGKLTGAAVTPRPVCASQYALANYACSMIPYSPLPPPAP 60

Query: 61  PSSSLSNNQDSQGSPVHG-HHHGH-HHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSR 120
            + SL  N        HG HHHGH  HRH H+   T  EE+CC+W+ ++D++CVC++L  
Sbjct: 61  STPSLDANHH------HGRHHHGHGGHRHRHRHHGTQEEEDCCRWLYEIDTDCVCDMLVH 120

Query: 121 LPAFLKRPIHNFSVTIGGSCNATYWCGGMKI 150
           LP FL RP+H +++ +G +CN TY CGG  I
Sbjct: 121 LPDFLSRPVHEYTLVVGDTCNVTYTCGGRVI 145

BLAST of CSPI07G16880 vs. NCBI nr
Match: XP_031744964.1 (uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical protein Csa_016586 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 2.3e-83
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60

Query: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120
           PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP
Sbjct: 61  PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120

Query: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 150
           AFLKRPIHNFSVTIGGSCNATYWCGGMKI
Sbjct: 121 AFLKRPIHNFSVTIGGSCNATYWCGGMKI 149

BLAST of CSPI07G16880 vs. NCBI nr
Match: KAA0057606.1 (hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK20987.1 hypothetical protein E5676_scaffold328G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 5.0e-62
Identity = 116/128 (90.62%), Postives = 119/128 (92.97%), Query Frame = 0

Query: 24  QWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPPPSSSLSNNQDSQGSPVHGHHHGH 83
           QWQPP VAPRPLCASQI LANYACATLPY+KL PPPPPSSSLS+N DSQGSPVH HHHGH
Sbjct: 84  QWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGSPVHTHHHGH 143

Query: 84  HHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVTIGG--SCNAT 143
           HHRHHHKIPL+PIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSV IGG  SCNAT
Sbjct: 144 HHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVIIGGSLSCNAT 203

Query: 144 YWCGGMKI 150
           Y CGGMKI
Sbjct: 204 YSCGGMKI 211

BLAST of CSPI07G16880 vs. NCBI nr
Match: XP_038899044.1 (uncharacterized protein LOC120086453 [Benincasa hispida])

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 114/150 (76.00%), Postives = 126/150 (84.00%), Query Frame = 0

Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           MGRFKILI SV LFL LITD+E QWQPP VAPRPLCASQI LANYACA LPY+ + PPPP
Sbjct: 1   MGRFKILIFSVTLFLALITDTEGQWQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPP 60

Query: 61  PSSSLSNNQDSQGSP----VHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELL 120
           PS SLS+N +SQGSP     H H HGHHH H  KIPL+P+EENCCKWVQQ+DSEC+C LL
Sbjct: 61  PSLSLSDNHESQGSPNQRHRHTHQHGHHHGHQQKIPLSPMEENCCKWVQQLDSECICGLL 120

Query: 121 SRLPAFLKRPIHNFSVTIGGSCNATYWCGG 147
           SRLPAFL+RP HNFSVT+GGSC+ATY CGG
Sbjct: 121 SRLPAFLERPQHNFSVTVGGSCDATYSCGG 150

BLAST of CSPI07G16880 vs. NCBI nr
Match: XP_023548911.1 (uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 8.5e-46
Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 0

Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           MGRFKIL+ +V LFL LI D+E+QWQPP VAPRP C SQI LAN ACA LPY+ +    P
Sbjct: 1   MGRFKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTM-ALSP 60

Query: 61  PSSSLSNNQDSQGSPV-HGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRL 120
           PS SLS+N +S G P  H H H H H H H+I L+P+EENCCKWVQQ+DS+C+C LLSRL
Sbjct: 61  PSVSLSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENCCKWVQQLDSQCLCRLLSRL 120

Query: 121 PAFLKRPIHNFSVTIGGSCNATYWCGG 147
           PAFL+RP H  S ++GGSCNAT+ CGG
Sbjct: 121 PAFLERPQHKISFSVGGSCNATFSCGG 146

BLAST of CSPI07G16880 vs. NCBI nr
Match: KAG7014427.1 (hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-38
Identity = 86/138 (62.32%), Postives = 103/138 (74.64%), Query Frame = 0

Query: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
           M RFKILI +V LFL LI D+E+QWQPP VAPRP C SQI LAN ACA LPY+ +    P
Sbjct: 1   MERFKILIFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTM-ALSP 60

Query: 61  PSSSLSNNQDSQG-SPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRL 120
           PS SLS+N +S G  P H H   H H H H+I L+P+EENCCKWVQQ+DS+C+C LLSRL
Sbjct: 61  PSLSLSDNHESHGLPPNHKHLRTHWHGHQHQISLSPMEENCCKWVQQLDSQCLCRLLSRL 120

Query: 121 PAFLKRPIHNFSVTIGGS 138
           PAFL+RP H  S ++GG+
Sbjct: 121 PAFLERPQHKISFSVGGN 137

BLAST of CSPI07G16880 vs. TAIR 10
Match: AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-19
Identity = 69/246 (28.05%), Postives = 91/246 (36.99%), Query Frame = 0

Query: 7   LILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPP----PPPS 66
           L ++V L L L + +  Q       PRPLCASQ  LANYAC+ LP   +PPP    PPP+
Sbjct: 4   LFIAVTLALALSSFTRGQRVIQIPPPRPLCASQYALANYACSRLPMHTVPPPAPITPPPA 63

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 64  PIAPPPPEHDHHDHDHDHDHDHDHDDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDRDRD 123

Query: 127 --------------------------------------SSLSNNQDSQGSPVHGHHHGHH 150
                                                 +   NN D+        HH HH
Sbjct: 124 RDRDRDRDRDHDRAHDDHDHNHDHDNDHNDNNHDHNHDADHHNNDDNSHDQHRRRHHRHH 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAN71.1e-83100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1[more]
A0A5A7UTY52.4e-6290.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0B2QE808.9e-3350.00Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007235 PE=4 SV=1[more]
A0A1S3TMG44.4e-3248.67uncharacterized protein LOC106756858 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
A0A2P5CXK71.3e-3147.02Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain ... [more]
Match NameE-valueIdentityDescription
XP_031744964.12.3e-83100.00uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical ... [more]
KAA0057606.15.0e-6290.63hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK2098... [more]
XP_038899044.11.8e-5976.00uncharacterized protein LOC120086453 [Benincasa hispida][more]
XP_023548911.18.5e-4664.63uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo][more]
KAG7014427.12.2e-3862.32hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT3G63095.14.2e-1928.05Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..88
NoneNo IPR availablePANTHERPTHR34377:SF6SUBFAMILY NOT NAMEDcoord: 4..146
NoneNo IPR availablePANTHERPTHR34377TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEINcoord: 4..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G16880.1CSPI07G16880.1mRNA