CSPI07G15990 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G15990
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr7: 14631435 .. 14631999 (+)
RNA-Seq Expression	CSPI07G15990
Synteny	CSPI07G15990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCTTGTGTCATTTCATTTACCTCTTTGATTCATGGATTTTGCTCGGCTGGAAAGTGGGAGGAGGCGAAACGTTTGATCAATGAAATGGTGGATCAAGGTGTTCAACCAAATGTGATCATATTTAATGCATTGATTGATATGCATTTCAAAGAAGGAAATGTTATCAAGGCTAAGGAGTTGCTTGAGGTCATGATTTAAAGAGGTATGGCTCCAGATTTGTTTACTTATAATTCACAGATGGAGTGGTTTCTTAAGGTTGGTGACTCGTTCGTTACTATGTCAAGTAAAGGATATGAATCTGTATGAATTTGATGTGATTAGTTACACTGTGTTAATCTATGGGTTTTGTAAAACCCTGAAGGTGGAAGAAGCAATGAAGCTTTATAATAAAATGCTTCTAGTTGGACAAAGGCTAGATATGAAAACATATATGGTGCCTTTGTTAAAAGGGCTTTTTTTTGGTGGCAAGGTTGGTGATGAAAAGAAACTTCAATTTGGTGTCATTAAAACTTATTCCATTGATTGGAATGCTCTTCTATTTTCCGATGCCATTAAATGA

mRNA sequence

ATGATTCCTTGTGTCATTTCATTTACCTCTTTGATTCATGGATTTTGCTCGGCTGGAAAGTGGGAGGAGGCGAAACGTTTGATCAATGAAATGGTGGATCAAGGTGTTCAACCAAATGTGATCATATTTAATGCATTGATTGATATGCATTTCAAAGAAGGAAATGTTATCAAGGCTAAGGAGTTGCTTGAGGATATGAATCTGTATGAATTTGATGTGATTAGTTACACTGTGTTAATCTATGGGTTTTGTAAAACCCTGAAGGTGGAAGAAGCAATGAAGCTTTATAATAAAATGCTTCTAGTTGGACAAAGGCTAGATATGAAAACATATATGGTGCCTTTGTTAAAAGGGCTTTTTTTTGGTGGCAAGGTTGGTGATGAAAAGAAACTTCAATTTGGTGTCATTAAAACTTATTCCATTGATTGGAATGCTCTTCTATTTTCCGATGCCATTAAATGA

Coding sequence (CDS)

ATGATTCCTTGTGTCATTTCATTTACCTCTTTGATTCATGGATTTTGCTCGGCTGGAAAGTGGGAGGAGGCGAAACGTTTGATCAATGAAATGGTGGATCAAGGTGTTCAACCAAATGTGATCATATTTAATGCATTGATTGATATGCATTTCAAAGAAGGAAATGTTATCAAGGCTAAGGAGTTGCTTGAGGATATGAATCTGTATGAATTTGATGTGATTAGTTACACTGTGTTAATCTATGGGTTTTGTAAAACCCTGAAGGTGGAAGAAGCAATGAAGCTTTATAATAAAATGCTTCTAGTTGGACAAAGGCTAGATATGAAAACATATATGGTGCCTTTGTTAAAAGGGCTTTTTTTTGGTGGCAAGGTTGGTGATGAAAAGAAACTTCAATTTGGTGTCATTAAAACTTATTCCATTGATTGGAATGCTCTTCTATTTTCCGATGCCATTAAATGA

Protein sequence

MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKELLEDMNLYEFDVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSIDWNALLFSDAIK*

Homology

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BLAST of CSPI07G15990 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.5e-19
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P  I + SLIHG C+  KWE A+ LI EM+D+G+  N I FN++ID H KEG VI++++L
Sbjct: 439 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 498

Query: 63  LEDMNL--YEFDVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTY 112
            E M     + +VI+Y  LI G+C   K++EAMKL + M+ VG + +  TY
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

[Close]

BLAST of CSPI07G15990 vs. ExPASy Swiss-Prot
Match: Q9FMD3 (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16640 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 55/149 (36.91%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V+++ SLI G CS+G+W +A R+++ M  + + P+V  FNALID   KEG V +A+E 
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278

Query: 63  LEDM--NLYEFDVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLF 122
            E+M     + D+++Y++LIYG C   +++EA +++  M+  G   D+ TY + L+ G  
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI-LINGYC 338

Query: 123 FGGKVGDEKKL-----QFGVIK---TYSI 142
              KV    KL     Q GV++   TY+I
Sbjct: 339 KSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366

[Close]

BLAST of CSPI07G15990 vs. ExPASy Swiss-Prot
Match: Q3ECK2 (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 49/152 (32.24%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V+++T+L++G C++ +W +A RL+++M+ + + PNVI ++AL+D   K G V++AKEL
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 282

Query: 63  LEDMNLYEF--DVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLF 122
            E+M       D+++Y+ LI G C   +++EA ++++ M+  G   D+ +Y   L+ G  
Sbjct: 283 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT-LINGFC 342

Query: 123 FGGKVGDEKKL-----QFGVIKTYSIDWNALL 148
              +V D  KL     Q G++   ++ +N L+
Sbjct: 343 KAKRVEDGMKLFREMSQRGLVSN-TVTYNTLI 372

[Close]

BLAST of CSPI07G15990 vs. ExPASy Swiss-Prot
Match: Q9SXD8 (Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana OX=3702 GN=At1g62590 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 52/166 (31.33%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V++++SLI   CS G+W +A +L+++M+++ + PN++ FNALID   KEG  ++A++L
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 352

Query: 63  LEDM-----------------------------NLYEF--------DVISYTVLIYGFCK 122
            +DM                              ++EF        DV++Y  LI GFCK
Sbjct: 353 YDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCK 412

Query: 123 TLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKL 132
           + +VE+  +L+ +M   G   D  TY   L++GLF  G   + +K+
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTY-TTLIQGLFHDGDCDNAQKV 457

[Close]

BLAST of CSPI07G15990 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 42/111 (37.84%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V+++ SLI+  C+ G+W +A RL++ M+++ + PNV+ FNALID  FKEG +++A++L
Sbjct: 291 PNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKL 350

Query: 63  LEDM--NLYEFDVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTY 112
            E+M     + D I+Y +LI GFC   +++EA +++  M+      +++TY
Sbjct: 351 HEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401

[Close]

BLAST of CSPI07G15990 vs. ExPASy TrEMBL
Match: A0A5D3CCW0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00420 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.3e-39
Identity = 101/178 (56.74%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           MIP VIS+TSLIHGFC  GKWEEAKRL NEMV+QG+QPNV+ FN LID+  KEG VI+AK
Sbjct: 273 MIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEGKVIEAK 332

Query: 61  ELLEDM-------NLYEF------------------------------DVISYTVLIYGF 120
           +LLE M       NL  +                              DVI YTVLI G+
Sbjct: 333 DLLEVMIQRGSVPNLLTYNSLIEGFCLVGDLNSARELFFSMLSKGCEPDVICYTVLINGY 392

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSI 142
           CKT KVEEAMK+YN ML VG+R D+KTY   LL+GLF GGKVGD KKL FGV+K Y I
Sbjct: 393 CKTSKVEEAMKIYNGMLQVGKRPDVKTYGA-LLRGLFQGGKVGDAKKL-FGVMKVYGI 448

[Close]

BLAST of CSPI07G15990 vs. ExPASy TrEMBL
Match: A0A1S4DYL3 (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.3e-39
Identity = 101/178 (56.74%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           MIP VIS+TSLIHGFC  GKWEEAKRL NEMV+QG+QPNV+ FN LID+  KEG VI+AK
Sbjct: 273 MIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEGKVIEAK 332

Query: 61  ELLEDM-------NLYEF------------------------------DVISYTVLIYGF 120
           +LLE M       NL  +                              DVI YTVLI G+
Sbjct: 333 DLLEVMIQRGSVPNLLTYNSLIEGFCLVGDLNSARELFFSMLSKGCEPDVICYTVLINGY 392

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSI 142
           CKT KVEEAMK+YN ML VG+R D+KTY   LL+GLF GGKVGD KKL FGV+K Y I
Sbjct: 393 CKTSKVEEAMKIYNGMLQVGKRPDVKTYGA-LLRGLFQGGKVGDAKKL-FGVMKVYGI 448

[Close]

BLAST of CSPI07G15990 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.7e-37
Identity = 96/186 (51.61%), Postives = 119/186 (63.98%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           M+P VIS++SLIHGFC AGKW+E+K+L +EMVDQGVQPN + F+ LID   KEG VI+AK
Sbjct: 217 MVPNVISYSSLIHGFCCAGKWDESKQLFDEMVDQGVQPNKVTFSVLIDTLCKEGKVIEAK 276

Query: 61  ELLEDM-------NLYEF------------------------------DVISYTVLIYGF 120
           +LLE M       N++ +                              DVISYTVLI G+
Sbjct: 277 KLLELMIESGIVPNVFTYNSLLKGFCMVGDLNSARELFVSMPSKGCEPDVISYTVLINGY 336

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSIDW 150
           CKTLKVEEAMKLYNKMLLVG+R ++ TY   LL GLF  GKVGD KKL F  +K + I  
Sbjct: 337 CKTLKVEEAMKLYNKMLLVGKRPNVITYGA-LLTGLFLAGKVGDAKKL-FSAMKAHGIAE 396

[Close]

BLAST of CSPI07G15990 vs. ExPASy TrEMBL
Match: A0A0A0K7C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230920 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.5e-35
Identity = 92/184 (50.00%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P + S+  +I   C  GKW+EAKRL NEMVDQGV+P+V+ F+ALID   KEG VI+AK+ 
Sbjct: 235 PNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKF 294

Query: 63  LEDMNL-------------------------------------YEFDVISYTVLIYGFCK 122
           LE M L                                     YE DVISYTVLIYG+CK
Sbjct: 295 LETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCK 354

Query: 123 TLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSIDWNA 150
           T  VEEAMKLYN+ML VG+  DMKT+ V LLKGLF  GKVGD KKL FGV+K +++  N 
Sbjct: 355 TFNVEEAMKLYNEMLRVGKWPDMKTFCV-LLKGLFLAGKVGDAKKL-FGVVKPHAVPKNL 414

[Close]

BLAST of CSPI07G15990 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.8e-35
Identity = 95/185 (51.35%), Postives = 115/185 (62.16%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           MIP VIS++SLIHGFC A KWEE+KRL +EMVDQGVQP+ + F+ LID   KEG VI+AK
Sbjct: 217 MIPNVISYSSLIHGFCCARKWEESKRLFDEMVDQGVQPDKVTFSVLIDTLCKEGKVIEAK 276

Query: 61  ELLE---------DMNLY----------------------------EFDVISYTVLIYGF 120
           +L E         D+ +Y                            E DVISYTVLI G+
Sbjct: 277 KLFEVMIQRGIVPDLFIYSSLMEGFCMVGDLNSARELFVSMPSKGCEPDVISYTVLINGY 336

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSIDW 149
           CKTLKVEEAMKLYN+MLLVG+R ++ TY   LL GLF  GKVGD KKL F  +K   I  
Sbjct: 337 CKTLKVEEAMKLYNEMLLVGKRPNVITYGA-LLTGLFLAGKVGDAKKL-FSAMKARGISA 396

[Close]

BLAST of CSPI07G15990 vs. NCBI nr
Match: XP_016901072.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-39
Identity = 101/178 (56.74%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           MIP VIS+TSLIHGFC  GKWEEAKRL NEMV+QG+QPNV+ FN LID+  KEG VI+AK
Sbjct: 273 MIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEGKVIEAK 332

Query: 61  ELLEDM-------NLYEF------------------------------DVISYTVLIYGF 120
           +LLE M       NL  +                              DVI YTVLI G+
Sbjct: 333 DLLEVMIQRGSVPNLLTYNSLIEGFCLVGDLNSARELFFSMLSKGCEPDVICYTVLINGY 392

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSI 142
           CKT KVEEAMK+YN ML VG+R D+KTY   LL+GLF GGKVGD KKL FGV+K Y I
Sbjct: 393 CKTSKVEEAMKIYNGMLQVGKRPDVKTYGA-LLRGLFQGGKVGDAKKL-FGVMKVYGI 448

[Close]

BLAST of CSPI07G15990 vs. NCBI nr
Match: KAA0059626.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08159.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-39
Identity = 101/178 (56.74%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           MIP VIS+TSLIHGFC  GKWEEAKRL NEMV+QG+QPNV+ FN LID+  KEG VI+AK
Sbjct: 273 MIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEGKVIEAK 332

Query: 61  ELLEDM-------NLYEF------------------------------DVISYTVLIYGF 120
           +LLE M       NL  +                              DVI YTVLI G+
Sbjct: 333 DLLEVMIQRGSVPNLLTYNSLIEGFCLVGDLNSARELFFSMLSKGCEPDVICYTVLINGY 392

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSI 142
           CKT KVEEAMK+YN ML VG+R D+KTY   LL+GLF GGKVGD KKL FGV+K Y I
Sbjct: 393 CKTSKVEEAMKIYNGMLQVGKRPDVKTYGA-LLRGLFQGGKVGDAKKL-FGVMKVYGI 448

[Close]

BLAST of CSPI07G15990 vs. NCBI nr
Match: KAE8646284.1 (hypothetical protein Csa_016592 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 6.1e-39
Identity = 102/185 (55.14%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           M P VIS+TSLIHGFC  GKWEEAKRL NEMV+QGVQPNV+ FN LID+  KEG VI+AK
Sbjct: 273 MTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAK 332

Query: 61  ELLEDM-------NLYEF------------------------------DVISYTVLIYGF 120
           +LLE M       NL  +                              DVI YTVLI G+
Sbjct: 333 DLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGY 392

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSIDW 149
           CKT KVEEAMKLYN ML VG+R D+KTY   LL GLF GGKVGD KKL FGV+K Y I  
Sbjct: 393 CKTSKVEEAMKLYNGMLQVGKRPDVKTYGA-LLTGLFQGGKVGDAKKL-FGVMKVYGIPG 452

[Close]

BLAST of CSPI07G15990 vs. NCBI nr
Match: XP_038897332.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-38
Identity = 101/185 (54.59%), Postives = 118/185 (63.78%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           MIP VIS+TSLIHGFC   KWEEAKRL NEMVDQGV+PNV+ FN LIDM  KEG VIKAK
Sbjct: 226 MIPDVISYTSLIHGFCWGEKWEEAKRLFNEMVDQGVRPNVVTFNVLIDMLCKEGKVIKAK 285

Query: 61  ELLE---------DMNLY----------------------------EFDVISYTVLIYGF 120
           ELL+         D+  Y                            E DVISYT+LI G+
Sbjct: 286 ELLDMMIQRGIVPDLVTYTSLIEGFCKVGDLNSARELFINMPSKGCEPDVISYTMLINGY 345

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSIDW 149
           CKTLKV EAMKLYN+ML VG+R ++KTY   LL GLF  GKVGD KKL FGV+K Y +  
Sbjct: 346 CKTLKVNEAMKLYNEMLQVGKRPNVKTYGA-LLTGLFQAGKVGDAKKL-FGVMKAYGVAI 405

[Close]

BLAST of CSPI07G15990 vs. NCBI nr
Match: XP_038877921.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X2 [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-38
Identity = 100/185 (54.05%), Postives = 114/185 (61.62%), Query Frame = 0


Query: 1   MIPCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAK 60
           M+P V  + SLIH FC +G W+EAKRL+NEMVDQGVQPNV+ FN LIDM  K G VIKAK
Sbjct: 152 MVPNVFPYNSLIHSFCCSGNWKEAKRLLNEMVDQGVQPNVVTFNVLIDMFCKAGKVIKAK 211

Query: 61  ELLE---------DMNLY----------------------------EFDVISYTVLIYGF 120
           ELLE         D+  Y                            E DVISYTVLI G+
Sbjct: 212 ELLEIMTHRGTLPDLFTYNSLIEGFCLVGDLNGANELFVSMPSKGCEPDVISYTVLINGY 271

Query: 121 CKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKLQFGVIKTYSIDW 149
           CK+LKVEEAMKLYN ML VG+R D+KTY   LL GLF  GKVGD KKL FGVIK Y I  
Sbjct: 272 CKSLKVEEAMKLYNGMLQVGKRPDVKTYGA-LLTGLFLAGKVGDAKKL-FGVIKAYGIPE 331

[Close]

BLAST of CSPI07G15990 vs. TAIR 10
Match: AT1G62680.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 49/152 (32.24%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V+++T+L++G C++ +W +A RL+++M+ + + PNVI ++AL+D   K G V++AKEL
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 282

Query: 63  LEDMNLYEF--DVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLF 122
            E+M       D+++Y+ LI G C   +++EA ++++ M+  G   D+ +Y   L+ G  
Sbjct: 283 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT-LINGFC 342

Query: 123 FGGKVGDEKKL-----QFGVIKTYSIDWNALL 148
              +V D  KL     Q G++   ++ +N L+
Sbjct: 343 KAKRVEDGMKLFREMSQRGLVSN-TVTYNTLI 372

[Close]

BLAST of CSPI07G15990 vs. TAIR 10
Match: AT5G16640.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 55/149 (36.91%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V+++ SLI G CS+G+W +A R+++ M  + + P+V  FNALID   KEG V +A+E 
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278

Query: 63  LEDM--NLYEFDVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLF 122
            E+M     + D+++Y++LIYG C   +++EA +++  M+  G   D+ TY + L+ G  
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI-LINGYC 338

Query: 123 FGGKVGDEKKL-----QFGVIK---TYSI 142
              KV    KL     Q GV++   TY+I
Sbjct: 339 KSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366

[Close]

BLAST of CSPI07G15990 vs. TAIR 10
Match: AT1G62590.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 90.9 bits (224), Expect = 9.7e-19
Identity = 52/166 (31.33%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V++++SLI   CS G+W +A +L+++M+++ + PN++ FNALID   KEG  ++A++L
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 352

Query: 63  LEDM-----------------------------NLYEF--------DVISYTVLIYGFCK 122
            +DM                              ++EF        DV++Y  LI GFCK
Sbjct: 353 YDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCK 412

Query: 123 TLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGLFFGGKVGDEKKL 132
           + +VE+  +L+ +M   G   D  TY   L++GLF  G   + +K+
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTY-TTLIQGLFHDGDCDNAQKV 457

[Close]

BLAST of CSPI07G15990 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-18
Identity = 42/111 (37.84%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V+++ SLI+  C+ G+W +A RL++ M+++ + PNV+ FNALID  FKEG +++A++L
Sbjct: 291 PNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKL 350

Query: 63  LEDM--NLYEFDVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTY 112
            E+M     + D I+Y +LI GFC   +++EA +++  M+      +++TY
Sbjct: 351 HEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401

[Close]

BLAST of CSPI07G15990 vs. TAIR 10
Match: AT1G63070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 87.8 bits (216), Expect = 8.2e-18
Identity = 44/121 (36.36%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 3   PCVISFTSLIHGFCSAGKWEEAKRLINEMVDQGVQPNVIIFNALIDMHFKEGNVIKAKEL 62
           P V ++  LI   C+ G+W +A RL+++M+++ + P+++ FNALID   KEG +++A++L
Sbjct: 283 PDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL 342

Query: 63  LEDMNLYEF---DVISYTVLIYGFCKTLKVEEAMKLYNKMLLVGQRLDMKTYMVPLLKGL 121
            ++M   +    DV++Y  LI GFCK  +VEE M+++ +M   G   +  TY   L+ G 
Sbjct: 343 YDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY-TTLIHGF 402

The following BLAST results are available for this feature:

BLAST of CSPI07G15990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q76C99	5.5e-19	45.95	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV...	[more]
Q9FMD3	2.8e-18	36.91	Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidop...	[more]
Q3ECK2	2.8e-18	32.24	Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidop...	[more]
Q9SXD8	1.4e-17	31.33	Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana OX...	[more]
Q9CAM8	4.0e-17	37.84	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]

BLAST of CSPI07G15990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCW0	1.3e-39	56.74	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DYL3	1.3e-39	56.74	pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis...	[more]
A0A5A7UUW8	4.7e-37	51.61	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K7C1	7.5e-35	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G230920 PE=4 SV=1	[more]
A0A1S4DYL6	9.8e-35	51.35	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc...	[more]

BLAST of CSPI07G15990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901072.1	2.7e-39	56.74	PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3...	[more]
KAA0059626.1	2.7e-39	56.74	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08159...	[more]
KAE8646284.1	6.1e-39	55.14	hypothetical protein Csa_016592 [Cucumis sativus]	[more]
XP_038897332.1	2.3e-38	54.59	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benin...	[more]
XP_038877921.1	3.0e-38	54.05	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isofor...	[more]

BLAST of CSPI07G15990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62680.1	2.0e-19	32.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G16640.1	2.0e-19	36.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62590.1	9.7e-19	31.33	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G63150.1	2.8e-18	37.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G63070.1	8.2e-18	36.36	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 42..66 e-value: 1.0E-4 score: 22.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 42..66 e-value: 1.6E-4 score: 19.6 coord: 6..40 e-value: 3.1E-11 score: 40.7 coord: 74..100 e-value: 2.5E-6 score: 25.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 3..40 e-value: 2.7E-11 score: 43.5 coord: 72..113 e-value: 2.3E-9 score: 37.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 4..38 score: 13.033043
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 72..106 score: 10.490022
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 70..133 e-value: 6.5E-9 score: 37.5 coord: 1..69 e-value: 2.3E-20 score: 74.9
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 3..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G15990.1	CSPI07G15990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding