CSPI07G14150 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G14150
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CLAVATA3/ESR (CLE)-related protein 41-like
Location	Chr7: 12654395 .. 12655157 (+)
RNA-Seq Expression	CSPI07G14150
Synteny	CSPI07G14150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCGTCCTTCTTAGGTTTTGTTGCTGGTTAATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTTTTTTCTTAAATTGCATGGCAACTGCTTCACAGAAACAATCTTCATCTCATTTTTTCGTTCTCTTTCTCTCTCTTTTCTTCTCCTTCCTCCTTCTTCTAACCCTCATTTCCTCTCCTCCTTCCATGGCCTCAGACCGCCATCACCGCCTTCTCTCTGCCTCCTCCACTGCCTTCCATCCAAAGAAATCTCGACCTCGAACAACCTCCCCTGCTACCGTTGTCGGACAGTTCGGAGCTGAAGCCCATGAAGTTCCTAGTGGTCCAAACCCTATATCCAACTAATTATGGGGAAAGAACAAAGGAAAAAAAAAAAAAAAACATTTGGCAGAGGTTTGATGTTTTTATGTTTTGTTTAATTGTCGCTGCTGATGATGCTGTCTTTATTTTTTAGTTTTTTTTTCCTTTTTGTGTTATTTTAATTGTATAGCGACAAATATACTGCAGCGTTCTTCTTCTTTTTCTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTTTTTCTATTTGTATGTAATAGCCTCTATTTCTTGCATATATAGAAGGTGATGGTTTGGATATTAATTATTGTATTAAAACTCTTTTAATTATTAGAGATTTTTGAGAGTTTAATTTCTTGTACGTGTTTTTCATTGACCATATATTAAAGAATTAAACTTTTCTTGGCTT

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCGTCCTTCTTAGGTTTTGTTGCTGGTTAATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTTTTTTCTTAAATTGCATGGCAACTGCTTCACAGAAACAATCTTCATCTCATTTTTTCGTTCTCTTTCTCTCTCTTTTCTTCTCCTTCCTCCTTCTTCTAACCCTCATTTCCTCTCCTCCTTCCATGGCCTCAGACCGCCATCACCGCCTTCTCTCTGCCTCCTCCACTGCCTTCCATCCAAAGAAATCTCGACCTCGAACAACCTCCCCTGCTACCGTTGTCGGACAGTTCGGAGCTGAAGCCCATGAAGTTCCTAGTGGTCCAAACCCTATATCCAACTAATTATGGGGAAAGAACAAAGGAAAAAAAAAAAAAAAACATTTGGCAGAGGTTTGATGTTTTTATGTTTTGTTTAATTGTCGCTGCTGATGATGCTGTCTTTATTTTTTAGTTTTTTTTTCCTTTTTGTGTTATTTTAATTGTATAGCGACAAATATACTGCAGCGTTCTTCTTCTTTTTCTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTTTTTCTATTTGTATGTAATAGCCTCTATTTCTTGCATATATAGAAGGTGATGGTTTGGATATTAATTATTGTATTAAAACTCTTTTAATTATTAGAGATTTTTGAGAGTTTAATTTCTTGTACGTGTTTTTCATTGACCATATATTAAAGAATTAAACTTTTCTTGGCTT

Coding sequence (CDS)

ATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTTTTTTCTTAAATTGCATGGCAACTGCTTCACAGAAACAATCTTCATCTCATTTTTTCGTTCTCTTTCTCTCTCTTTTCTTCTCCTTCCTCCTTCTTCTAACCCTCATTTCCTCTCCTCCTTCCATGGCCTCAGACCGCCATCACCGCCTTCTCTCTGCCTCCTCCACTGCCTTCCATCCAAAGAAATCTCGACCTCGAACAACCTCCCCTGCTACCGTTGTCGGACAGTTCGGAGCTGAAGCCCATGAAGTTCCTAGTGGTCCAAACCCTATATCCAACTAA

Protein sequence

MDIEPLWGVGGWFFFLNCMATASQKQSSSHFFVLFLSLFFSFLLLLTLISSPPSMASDRHHRLLSASSTAFHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPISN*

Homology

[Close]

BLAST of CSPI07G14150 vs. ExPASy Swiss-Prot
Match: A1EC31 (CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea OX=34245 GN=TDIF PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-08
Identity = 50/133 (37.59%), Postives = 59/133 (44.36%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFL------NCMATASQKQSSSHF------FVLFLSLFFSFLLLLTL 60
           MDI+ LW  GGWFF L       CMA        SHF        LF        +L+T+
Sbjct: 1   MDIDLLWSFGGWFFILFPETINYCMAKLRSTSQISHFTNPRSCSSLFFVALLIITILITM 60

Query: 61  ISSPPSM----------ASDRHHRLLSASSTA-----FHPKKSRPRTTSPATVVGQFGAE 107
           + S  SM           S   H   S SSTA      HPK++  ++    T    F A 
Sbjct: 61  LQSSTSMEVTSLPTHQPTSSNSHDESSTSSTATTTTDLHPKRTHHQSHPKPT--RSFEAG 120

[Close]

BLAST of CSPI07G14150 vs. ExPASy TrEMBL
Match: A0A2I4EQ07 (CLAVATA3/ESR (CLE)-related protein 41-like OS=Juglans regia OX=51240 GN=LOC108991613 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.4e-17
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMA-------TASQKQSSSHFFVLFLSLFFSFLLLLTLISSP- 60
           MD EPLW +GGW  F NCMA       + S+  + SH FVLF+++ F FLLL+ LIS+P 
Sbjct: 1   MDFEPLWALGGWLIFPNCMAVPKTSSPSISEIHAKSHPFVLFIAILFIFLLLVNLISNPT 60

Query: 61  -PSMASDRH-HRLL------SASSTA-FHPKKSRPRTT-----SPATVVGQFGAEAHEVP 107
            PSMAS     RLL      SA+STA  +PK++  R T     S +T   +FGAEAHEVP
Sbjct: 61  NPSMASSAPVKRLLLEPQQASAASTANLYPKQASNRHTSSSSSSSSTTKREFGAEAHEVP 120

[Close]

BLAST of CSPI07G14150 vs. ExPASy TrEMBL
Match: A0A5N6QFS1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002561 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMA------TASQKQSSSHFFVLFLSLFFSFLLLLTLISSP-- 60
           MD EPLW +GGWF F NCMA      + S+  + SH FVLF+++ F FLLL+ L S+P  
Sbjct: 1   MDFEPLWALGGWFLFPNCMAVPKTSSSISEIHTKSHPFVLFIAILFIFLLLINL-SNPIN 60

Query: 61  PSMASDR--HHRLL-----SASSTA-FHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPI 107
           PSMAS      R+L     SA+STA  HPK++R + T       +FGAEAHEVPSGPNPI
Sbjct: 61  PSMASSSVPLKRVLLDPSASATSTANLHPKQARNKPTE-----REFGAEAHEVPSGPNPI 116

[Close]

BLAST of CSPI07G14150 vs. ExPASy TrEMBL
Match: A0A6A1VDB7 (CLAVATA3/ESR (CLE)-related protein TDIF OS=Morella rubra OX=262757 GN=CJ030_MR6G022644 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.2e-16
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMA------TASQKQSSSHFFVLFLSLFFSFLLLLTLISS-PP 60
           MD EPLW +GGW  F NCMA      + S+  + SH F+LFL++ F FLLL+ L ++  P
Sbjct: 1   MDFEPLWDLGGWLIFPNCMAVPKTSSSISEIHTKSHPFILFLAILFIFLLLINLSNTMNP 60

Query: 61  SMASD-RHHRLL-------SASSTAFHPKKSRPRTTSP-ATVVGQFGAEAHEVPSGPNPI 107
           SMAS     RLL       ++++T+ HPK+   R TSP ++   +FGA+AHEVPSGPNPI
Sbjct: 61  SMASSVPVKRLLLDPSASAASTTTSLHPKQIGKRHTSPTSSTKREFGADAHEVPSGPNPI 120

[Close]

BLAST of CSPI07G14150 vs. ExPASy TrEMBL
Match: A0A6P6A4S1 (CLAVATA3/ESR (CLE)-related protein 41-like OS=Durio zibethinus OX=66656 GN=LOC111306156 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.2e-16
Identity = 63/133 (47.37%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 1   MDIEPLWGVGGW-FFFLNCMA------TASQKQSSSHFFVLFLSLFFSFLLLLTLISSPP 60
           MDIEPLW +GGW F FL+CMA      TAS+  + SH  +LFL+LFF FLLLL   ++P 
Sbjct: 1   MDIEPLWALGGWLFLFLDCMAAPKSPSTASETYAKSHSLLLFLTLFFIFLLLLNPTTNPI 60

Query: 61  SMASDR------HHRLL--------SASSTAFHPKKSRPRTTSPATVVG------QFGAE 107
           +M S          RLL        ++S+T  HPK+++   TS ++         QFGAE
Sbjct: 61  AMNSSNVTPSIPFRRLLLDTSSSKSTSSATNLHPKQTQNVHTSSSSSSSSKSSRRQFGAE 120

[Close]

BLAST of CSPI07G14150 vs. ExPASy TrEMBL
Match: A0A2P6PUF9 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0285001 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMATASQKQSSSHF-------FVLFLSLFFSFLLLLTLISSPP 60
           MDIEPLW +GGWF   NCMA+A +  S SH         +L L++ F  LLL+T +S+P 
Sbjct: 1   MDIEPLWALGGWFLLPNCMASAPKSISESHTTSTKLHPLILSLTVVFILLLLVTPLSNPS 60

Query: 61  SMASDRHHRLLSASSTA-----FHPKKSRPRTTSPATVV----GQFGAEAHEVPSGPNPI 107
           SMAS    RLL A +T        PKK++   TS ++       +FGAEAHEVPSGPNPI
Sbjct: 61  SMAS---KRLLLADTTTTTTTNLQPKKAKNSHTSTSSTSTRARSEFGAEAHEVPSGPNPI 119

[Close]

BLAST of CSPI07G14150 vs. NCBI nr
Match: KAE8646241.1 (hypothetical protein Csa_015939 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMATASQKQSSSHFFVLFLSLFFSFLLLLTLISSPPSMASDRH 60
           MDIEPLWGVGGWFFFLNCMATASQKQSSSHFFVLFLSLFFSFLLLLTLISSPPSMASDRH
Sbjct: 1   MDIEPLWGVGGWFFFLNCMATASQKQSSSHFFVLFLSLFFSFLLLLTLISSPPSMASDRH 60

Query: 61  HRLLSASSTAFHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPISN 107
           HRLLSASSTAFHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPISN
Sbjct: 61  HRLLSASSTAFHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPISN 106

[Close]

BLAST of CSPI07G14150 vs. NCBI nr
Match: KAG6657667.1 (hypothetical protein CIPAW_04G106100 [Carya illinoinensis] >KAG6717530.1 hypothetical protein I3842_04G104800 [Carya illinoinensis] >KAG7983288.1 hypothetical protein I3843_04G097900 [Carya illinoinensis])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 67/126 (53.17%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMA-------TASQKQSSSHFFVLFLSLFFSFLLLLTLISSP- 60
           MD EPLW VGGW  F NCMA       + S+  + SH FVLFL + F FLLL+ LIS+P 
Sbjct: 1   MDFEPLWAVGGWLIFPNCMAVPKTSSPSISEIHAKSHPFVLFLVMLFIFLLLINLISNPT 60

Query: 61  -PSMASDRH-HRLL------SASSTA-FHPKKSRPR---TTSPATVVGQFGAEAHEVPSG 107
            PSMAS     RLL      SA+STA  +PK++R R   ++S ++   +FGAEAHEVPSG
Sbjct: 61  NPSMASSAPIKRLLLEPQQASAASTANLYPKQTRNRPHTSSSSSSTKREFGAEAHEVPSG 120

[Close]

BLAST of CSPI07G14150 vs. NCBI nr
Match: XP_018821485.1 (CLAVATA3/ESR (CLE)-related protein 41-like [Juglans regia] >KAF5458234.1 hypothetical protein F2P56_022280 [Juglans regia])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMA-------TASQKQSSSHFFVLFLSLFFSFLLLLTLISSP- 60
           MD EPLW +GGW  F NCMA       + S+  + SH FVLF+++ F FLLL+ LIS+P 
Sbjct: 1   MDFEPLWALGGWLIFPNCMAVPKTSSPSISEIHAKSHPFVLFIAILFIFLLLVNLISNPT 60

Query: 61  -PSMASDRH-HRLL------SASSTA-FHPKKSRPRTT-----SPATVVGQFGAEAHEVP 107
            PSMAS     RLL      SA+STA  +PK++  R T     S +T   +FGAEAHEVP
Sbjct: 61  NPSMASSAPVKRLLLEPQQASAASTANLYPKQASNRHTSSSSSSSSTTKREFGAEAHEVP 120

[Close]

BLAST of CSPI07G14150 vs. NCBI nr
Match: KAG2712028.1 (hypothetical protein I3760_04G105500 [Carya illinoinensis])

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16
Identity = 65/126 (51.59%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMA-------TASQKQSSSHFFVLFLSLFFSFLLLLTLISSP- 60
           MD EPLW +GGW  F NCMA       + S+  + SH FVLFL++   FLLL+ LIS+P 
Sbjct: 1   MDFEPLWALGGWLIFPNCMAVPKTSSPSISEIHAKSHPFVLFLAILSIFLLLINLISNPT 60

Query: 61  -PSMASDRH-HRLL------SASSTA-FHPKKSRPR---TTSPATVVGQFGAEAHEVPSG 107
            PSMAS     RLL      SA+STA  +PK++R R   ++S ++   +FGAEAHEVPSG
Sbjct: 61  NPSMASSAPIKRLLLEPQQASAASTANLYPKQTRNRPHTSSSSSSTKREFGAEAHEVPSG 120

[Close]

BLAST of CSPI07G14150 vs. NCBI nr
Match: KAE7997975.1 (hypothetical protein FH972_002561 [Carpinus fangiana])

HSP 1 Score: 94.0 bits (232), Expect = 8.5e-16
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFFFLNCMA------TASQKQSSSHFFVLFLSLFFSFLLLLTLISSP-- 60
           MD EPLW +GGWF F NCMA      + S+  + SH FVLF+++ F FLLL+ L S+P  
Sbjct: 1   MDFEPLWALGGWFLFPNCMAVPKTSSSISEIHTKSHPFVLFIAILFIFLLLINL-SNPIN 60

Query: 61  PSMASDR--HHRLL-----SASSTA-FHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPI 107
           PSMAS      R+L     SA+STA  HPK++R + T       +FGAEAHEVPSGPNPI
Sbjct: 61  PSMASSSVPLKRVLLDPSASATSTANLHPKQARNKPTE-----REFGAEAHEVPSGPNPI 116

[Close]

BLAST of CSPI07G14150 vs. TAIR 10
Match: AT3G24770.1 (CLAVATA3/ESR-RELATED 41 )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 36/99 (36.36%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 19  MATASQKQS--SSHFFVLFLSLFFSFLLLLTLISSP------PSMASDRHHRLLSASSTA 78
           MAT++ + +  SSH   L L   F  LLL + ++ P       SM +     LL +S  A
Sbjct: 1   MATSNDQTNTKSSHSRTLLLLFIFLSLLLFSSLTIPMTRHQSTSMVAPFKRVLLESSVPA 60

Query: 79  FHPKKSRPRTTSPATVVG---QFGAEAHEVPSGPNPISN 107
                 RP+ ++  +      +FG +AHEVPSGPNPISN
Sbjct: 61  SSTMDLRPKASTRRSRTSRRREFGNDAHEVPSGPNPISN 99

The following BLAST results are available for this feature:

BLAST of CSPI07G14150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1EC31	1.4e-08	37.59	CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea OX=34245 GN=TDIF PE=1...	[more]

BLAST of CSPI07G14150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I4EQ07	6.4e-17	51.56	CLAVATA3/ESR (CLE)-related protein 41-like OS=Juglans regia OX=51240 GN=LOC10899...	[more]
A0A5N6QFS1	4.1e-16	52.46	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002561 PE=4 SV=1	[more]
A0A6A1VDB7	9.2e-16	48.36	CLAVATA3/ESR (CLE)-related protein TDIF OS=Morella rubra OX=262757 GN=CJ030_MR6G...	[more]
A0A6P6A4S1	9.2e-16	47.37	CLAVATA3/ESR (CLE)-related protein 41-like OS=Durio zibethinus OX=66656 GN=LOC11...	[more]
A0A2P6PUF9	2.7e-15	48.36	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0285001 PE=4...	[more]

BLAST of CSPI07G14150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646241.1	2.8e-51	100.00	hypothetical protein Csa_015939 [Cucumis sativus]	[more]
KAG6657667.1	2.7e-17	53.17	hypothetical protein CIPAW_04G106100 [Carya illinoinensis] >KAG6717530.1 hypothe...	[more]
XP_018821485.1	1.3e-16	51.56	CLAVATA3/ESR (CLE)-related protein 41-like [Juglans regia] >KAF5458234.1 hypothe...	[more]
KAG2712028.1	2.2e-16	51.59	hypothetical protein I3760_04G105500 [Carya illinoinensis]	[more]
KAE7997975.1	8.5e-16	52.46	hypothetical protein FH972_002561 [Carpinus fangiana]	[more]

BLAST of CSPI07G14150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24770.1	2.7e-04	36.36	CLAVATA3/ESR-RELATED 41	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	PANTHER	PTHR35301:SF2	SUBFAMILY NOT NAMED	coord: 1..106
IPR037495	CLAVATA3/ESR (CLE)-related protein 41/42/44	PANTHER	PTHR35301	CLAVATA3/ESR (CLE)-RELATED PROTEIN 41-RELATED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G14150.1	CSPI07G14150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development
biological_process	GO:0010087	phloem or xylem histogenesis
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0033612	receptor serine/threonine kinase binding