CSPI07G13350 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G13350
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 11801170 .. 11802150 (-)
RNA-Seq Expression	CSPI07G13350
Synteny	CSPI07G13350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATACGTTCATCTCAAATAGACATATTATACATCTCTTACTTACACCACTAAACAATACATAACATACATGCACCTTCCAAGTAGAGTTTAGTAGGGGAAATCTAAAATTCTCCCAATAAACTCATTCCTAAACATGAACAAAATTAAACTTAATAATTTTGCCAACTATCACTTGTTTAATTAGGCAACCAACTCATCCAAACTTACCCCCAAGATTTAAAGTTGATCCCAATACAACCTTGAATAGAAATTTGCACAACTCAATTCCTCAACCACACCTTAACTTTCCAACAACACAATTCTAACTCATTCCAGTTTTAACTCATTTAAGACCAAAAACAATAATTAGTTGGTGTACCAAACCCAACAAGGGCTCAAATATGTTGCAGACGGCTAAACTGAAGGTGGCTCGGTTAGCAAGGGCTTCGGCTCGAGTCTTGAGACTCACGGCTCGCATACGACTTACACAAGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGCGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAAAGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGGTGATCCGCGCGCGGCTCGGCTGTGTGCGAAGAGAGACGTTCGGATCTGATGATTGGAGGCGACCGACAACTAGTGACTGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAGAACGGTGCGGCTACGGCTGTGGATGGAGATCGAGGCGGAGAAGGCTTCGTCTGGGCGGTCGTCGTCGTGCAGAGGCTGCGTTAGTCGTGGGATTCACTGCGCCCGGAGGTGCACAGTGAAAGGGCGGCGGCCAGGGCTTTAATTGTGAAGGAAAGAGGAAGAGTGGAGAAGAAGGTGAATAGTAAGTTCACG

mRNA sequence

TATACGTTCATCTCAAATAGACATATTATACATCTCTTACTTACACCACTAAACAATACATAACATACATGCACCTTCCAAGTAGAGTTTAGTAGGGGAAATCTAAAATTCTCCCAATAAACTCATTCCTAAACATGAACAAAATTAAACTTAATAATTTTGCCAACTATCACTTGTTTAATTAGGCAACCAACTCATCCAAACTTACCCCCAAGATTTAAAGTTGATCCCAATACAACCTTGAATAGAAATTTGCACAACTCAATTCCTCAACCACACCTTAACTTTCCAACAACACAATTCTAACTCATTCCAGTTTTAACTCATTTAAGACCAAAAACAATAATTAGTTGGTGTACCAAACCCAACAAGGGCTCAAATATGTTGCAGACGGCTAAACTGAAGGTGGCTCGGTTAGCAAGGGCTTCGGCTCGAGTCTTGAGACTCACGGCTCGCATACGACTTACACAAGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGCGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAAAGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGAGACGTTCGGATCTGATGATTGGAGGCGACCGACAACTAGTGACTGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAGAACGGTGCGGCTACGGCTGTGGATGGAGATCGAGGCGGAGAAGGCTTCGTCTGGGCGGTCGTCGTCGTGCAGAGGCTGCGTTAGTCGTGGGATTCACTGCGCCCGGAGGTGCACAGTGAAAGGGCGGCGGCCAGGGCTTTAATTGTGAAGGAAAGAGGAAGAGTGGAGAAGAAGGTGAATAGTAAGTTCACG

Coding sequence (CDS)

ATGTTGCAGACGGCTAAACTGAAGGTGGCTCGGTTAGCAAGGGCTTCGGCTCGAGTCTTGAGACTCACGGCTCGCATACGACTTACACAAGAACGACTCGGTGCACATGGCTCGCGTACGGCTTACACGGAACTGGCTTGCGTACGGCTCACACAGAAGTGGCTCGGTTGCGCGCGGCTCGCGTACGGCTTACGCGAAGCTGGCTCGGTGAAGGGAAAAAAGGCTCGGCTTCTCGAGAAAGTGGCTCGGACGGAGGACTCACACGACAGACTGAAGTTGAGACGTTCGGATCTGATGATTGGAGGCGACCGACAACTAGTGACTGTGGCGCAGACGACTGGAGGAAACTGGACGGCACGGGTTCGCGATGGTAGAACGGTGCGGCTACGGCTGTGGATGGAGATCGAGGCGGAGAAGGCTTCGTCTGGGCGGTCGTCGTCGTGCAGAGGCTGCGTTAGTCGTGGGATTCACTGCGCCCGGAGGTGCACAGTGAAAGGGCGGCGGCCAGGGCTTTAA

Protein sequence

MLQTAKLKVARLARASARVLRLTARIRLTQERLGAHGSRTAYTELACVRLTQKWLGCARLAYGLREAGSVKGKKARLLEKVARTEDSHDRLKLRRSDLMIGGDRQLVTVAQTTGGNWTARVRDGRTVRLRLWMEIEAEKASSGRSSSCRGCVSRGIHCARRCTVKGRRPGL*

Homology

[Close]

BLAST of CSPI07G13350 vs. ExPASy TrEMBL
Match: A0A0A0K4E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G325170 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 8.1e-38
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MLQTAKLKVARLARASARVLRLTARIRLTQERLGAHGSRTAYTELACVRLTQKWLGCARL 60
          MLQTAKLKVARLARASARVLRLTA IRLTQERLGAH SRTAYTELACVRLTQKWLGCARL
Sbjct: 1  MLQTAKLKVARLARASARVLRLTAHIRLTQERLGAHSSRTAYTELACVRLTQKWLGCARL 60

Query: 61 AYGLREAGSVKGKKARLLEKVARTEDSHDRLKL 94
          AYGLREAGSVKGK ARLLEKVARTEDSHDRLKL
Sbjct: 61 AYGLREAGSVKGKMARLLEKVARTEDSHDRLKL 93

[Close]

BLAST of CSPI07G13350 vs. NCBI nr
Match: KGN44525.1 (hypothetical protein Csa_015649 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-37
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MLQTAKLKVARLARASARVLRLTARIRLTQERLGAHGSRTAYTELACVRLTQKWLGCARL 60
          MLQTAKLKVARLARASARVLRLTA IRLTQERLGAH SRTAYTELACVRLTQKWLGCARL
Sbjct: 1  MLQTAKLKVARLARASARVLRLTAHIRLTQERLGAHSSRTAYTELACVRLTQKWLGCARL 60

Query: 61 AYGLREAGSVKGKKARLLEKVARTEDSHDRLKL 94
          AYGLREAGSVKGK ARLLEKVARTEDSHDRLKL
Sbjct: 61 AYGLREAGSVKGKMARLLEKVARTEDSHDRLKL 93

[Close]

BLAST of CSPI07G13350 vs. NCBI nr
Match: KAE8645696.1 (hypothetical protein Csa_020192 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 43/89 (48.31%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 6   KLKVARLARASARVL-RLT----------------ARIRLTQERLGAHGSRTAYTELACV 65
           KLKV RLAR SARVL RL+                AR+RLT+  LG  G+RTA+TE    
Sbjct: 31  KLKVVRLARVSARVLERLSARGSRTGLCRNGSVHVARVRLTRNWLGERGARTAHTE---- 90

Query: 66  RLTQKWLGCARLAYGLREAGSVKGKKARL 78
                WLGCA LAY L E GSV     RL
Sbjct: 91  -----WLGCAWLAYDLNETGSVHVAHVRL 110

The following BLAST results are available for this feature:

BLAST of CSPI07G13350 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G13350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4E5	8.1e-38	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G325170 PE=4 SV=1	[more]

BLAST of CSPI07G13350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44525.1	1.7e-37	96.77	hypothetical protein Csa_015649 [Cucumis sativus]	[more]
KAE8645696.1	9.2e-04	48.31	hypothetical protein Csa_020192 [Cucumis sativus]	[more]

BLAST of CSPI07G13350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G13350.1	CSPI07G13350.1	mRNA