CSPI07G12990 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G12990
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	glycolipid transfer protein 3
Location	Chr7: 11450300 .. 11451971 (+)
RNA-Seq Expression	CSPI07G12990
Synteny	CSPI07G12990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAATCCCCCATCAAGTCCGCAATTCAACAACTCTCCCAACTCCTAAACCTCAGACCCGAATCATCCGGAGAAGATCGTCAGAGAAGCAGTACTCATAACGACGAAGATAGTGTCACCACTAACATCGCCATTCCCATCTTACCTTTCATTTCTCTCTGCAATTCTCTCATTCGCCTTCTTGGTTTGTCTTTTCAAACCTTTAACTTCGAAAGATCCATATCAGTTGAGCTGTAATGCTTATGTTTACGTTTAATAATATATACTAGTATCTGGTTCTCAATCGTGATTGCAGATAAAATTGGGCCAACAATGGGAGTTCTAAGGCAAGAAATTCATCAGAACATTCAGGTTCGTGTTTTGTATAAAAATTAAGTAGTAATGGGAAGAGTAATTTGTAATGAATGGATAATTGTAGCAGAGATTTGAAATGGGGGAAGAACTGAGGGATTTGGTTGAGATATTGAAGAAGGAGGGAAGTGAAGGGACGGCCAGGAGCGGAAGCAGCTGCAGCAGAGCCTTCCTTTGGCTAATTCGGTATTTATCAAAAGCAAAATAATTATACACAGATTCAACTTTATGAAAATGATCATTCAGATTAATTTTAGGAGGTGACCATTTAAGTCTTATTTTTATTTTATTCTTTTAATGGATTAAAATGGTCATTCTTTTTCTTGATCAAAGTTGAAAGTATATATAATAATTCATTTATTAAATTAAAAAAAAAAGTATAGTTTCCTTAATTCTTTAGATTGATTTGTATGTGCAACAAAATGATAGTTACCTTTTTATATCATTCACAGATTTCTAATATGGATTAAACGTAGCCTTTTGTTTTCTCATTGGCCATATATATTTTAAATATAAGATTACATAGAACTACACTTTTACGCTTAATTAAATTAGTTAATTATTTAGGTGATGGATAACCATTCTGTTTTTTTATCAATTTTGAAAATTAAGCATATTTTCTCATTATCCTTGTACATTTCTTAAATACAATAGTTAAATTTTGTTGCCAAGTTTCCAAAAATAATAAATTATTAAAAGTCACTTTTTTGAGTTGGAATAGTTACATATATATATATATAGACACGTATATAACAATATTTTTTAAAAAATTTAAATATAACAAAATTTGTCAGAATCTACAGCGATAGTAGTCTATCACTCATAGACTATACATGATAGAAGTATATTGTTGATAGATTTTATCGTATTTGTAATTTTTAAAAAAAATATTGCTATTACTTTGAATTATCACCCCTTAAATTGTTGTACTCGTTACCTTTTTAGTTTCTATGATTTGGCTTACTTTTTTAAATCATTGATAGAATGTAAATGGAAAAGAAGAAAATTATTGTAGACGAAAGTATGTGTTTATAGATTAAAATTTTGAAAACAAAAACAAAAGAATAAAATGATTATTAAACGAGATCGAAATTGTTTTAATCGTTAATCAAGTAGTATGATTATTAAATGATAAAAGAAATATGAGTTTTGGAATACATGTAGATCTCTAGATTTCACAGCAAAGCTATTGGAGAAGATGTTAGAAGAACCAGAGATGAACATGGAACAAGCAGTAGAAGAATCCTACAATCTAACCTTGAAGCCATGGCATGGTTGGATTTCATTGGCTGCTTACAAAGTAATTATCTCTTTTTAA

mRNA sequence

ATGGAGAAATCCCCCATCAAGTCCGCAATTCAACAACTCTCCCAACTCCTAAACCTCAGACCCGAATCATCCGGAGAAGATCGTCAGAGAAGCAGTACTCATAACGACGAAGATAGTGTCACCACTAACATCGCCATTCCCATCTTACCTTTCATTTCTCTCTGCAATTCTCTCATTCGCCTTCTTGATAAAATTGGGCCAACAATGGGAGTTCTAAGGCAAGAAATTCATCAGAACATTCAGAGATTTGAAATGGGGGAAGAACTGAGGGATTTGGTTGAGATATTGAAGAAGGAGGGAAGTGAAGGGACGGCCAGGAGCGGAAGCAGCTGCAGCAGAGCCTTCCTTTGGCTAATTCGATCTCTAGATTTCACAGCAAAGCTATTGGAGAAGATGTTAGAAGAACCAGAGATGAACATGGAACAAGCAGTAGAAGAATCCTACAATCTAACCTTGAAGCCATGGCATGGTTGGATTTCATTGGCTGCTTACAAAGTAATTATCTCTTTTTAA

Coding sequence (CDS)

ATGGAGAAATCCCCCATCAAGTCCGCAATTCAACAACTCTCCCAACTCCTAAACCTCAGACCCGAATCATCCGGAGAAGATCGTCAGAGAAGCAGTACTCATAACGACGAAGATAGTGTCACCACTAACATCGCCATTCCCATCTTACCTTTCATTTCTCTCTGCAATTCTCTCATTCGCCTTCTTGATAAAATTGGGCCAACAATGGGAGTTCTAAGGCAAGAAATTCATCAGAACATTCAGAGATTTGAAATGGGGGAAGAACTGAGGGATTTGGTTGAGATATTGAAGAAGGAGGGAAGTGAAGGGACGGCCAGGAGCGGAAGCAGCTGCAGCAGAGCCTTCCTTTGGCTAATTCGATCTCTAGATTTCACAGCAAAGCTATTGGAGAAGATGTTAGAAGAACCAGAGATGAACATGGAACAAGCAGTAGAAGAATCCTACAATCTAACCTTGAAGCCATGGCATGGTTGGATTTCATTGGCTGCTTACAAAGTAATTATCTCTTTTTAA

Protein sequence

MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIRLLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVIISF*

Homology

[Close]

BLAST of CSPI07G12990 vs. ExPASy Swiss-Prot
Match: Q9LU33 (Glycolipid transfer protein 3 OS=Arabidopsis thaliana OX=3702 GN=GLTP3 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-35
Identity = 80/168 (47.62%), Postives = 109/168 (64.88%), Query Frame = 0


Query: 6   IKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIRLLDKI 65
           I SAI++LS L             +++    E      I +P+ P +S CN ++++LDKI
Sbjct: 20  IGSAIEELSVL----------SIAKTTIVTTEKEAINIINLPLKPLLSFCNIIVQVLDKI 79

Query: 66  GPTMGVLRQEIHQNIQRFEMGEE-----LRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 125
           GPTM VLR +I QNIQR E   E       +LVEIL+KE  EG++R   SCSRA LWL R
Sbjct: 80  GPTMAVLRHDIDQNIQRLEKMWESDPLVYSNLVEILRKEAKEGSSRKPKSCSRAALWLTR 139

Query: 126 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           ++DFT  LL++++++   NMEQA+EE YNLT+KPWHGWIS AA+KV +
Sbjct: 140 AMDFTLALLQRLVKDMSQNMEQAIEECYNLTIKPWHGWISSAAFKVAL 177

[Close]

BLAST of CSPI07G12990 vs. ExPASy Swiss-Prot
Match: Q6NLQ3 (Glycolipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=GLTP2 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.0e-31
Identity = 78/172 (45.35%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 2   EKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIRL 61
           +K+ I++AI++LS  +  +P    E     +TH           IP+ P +S C+ +I++
Sbjct: 12  KKTEIQTAIEELSVFIVTKPADKTE-----ATH-----------IPLRPILSFCSLIIQV 71

Query: 62  LDKIGPTMGVLRQEIHQNIQRFEMGEE-----LRDLVEILKKEGSEGTARSGSSCSRAFL 121
           LDKIGPTM VLRQ+I QNIQR E   E       +L EILKKE  EGT++  +SC RA  
Sbjct: 72  LDKIGPTMAVLRQDIDQNIQRLEKFYETDSCVYSNLAEILKKEKEEGTSKMVASCGRALF 131

Query: 122 WLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           WL R++DFTA LL  + +E    ME+ VEE Y  TLKP HGWI+ AA+KV +
Sbjct: 132 WLTRTMDFTAGLLRLLSKEMSSKMEELVEECYMTTLKPHHGWIASAAFKVCL 167

[Close]

BLAST of CSPI07G12990 vs. ExPASy Swiss-Prot
Match: O22797 (Glycolipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=GLTP1 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-16
Identity = 38/124 (30.65%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 50  PFISLCNSLIRLLDKIGPTMGVLRQEIHQNIQRFEMG-----EELRDLVEILKKEGSEGT 109
           PF+ LC +++ ++DK G  M +++ +I  NI R E       ++ + L   ++ E     
Sbjct: 27  PFLELCKTILPVIDKFGAAMTLVKSDIGGNITRLEKNYLSDPDKFKYLYTFVQVEIESKI 86

Query: 110 ARSGSSCSRAFLWLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAY 169
           A+  SSC+   LWL R++DF  +L   ++   + +M QA  +SY  TLK WHGW++ + +
Sbjct: 87  AKGSSSCTNGLLWLTRAMDFLVELFRNLVAHQDWSMPQACADSYQKTLKKWHGWLASSTF 146

[Close]

BLAST of CSPI07G12990 vs. ExPASy TrEMBL
Match: A0A0A0K855 (GLTP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G318970 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR
Sbjct: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR
Sbjct: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120

Query: 121 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYK+ +
Sbjct: 121 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKIAL 168

[Close]

BLAST of CSPI07G12990 vs. ExPASy TrEMBL
Match: A0A1S3CEW2 (glycolipid transfer protein 3 OS=Cucumis melo OX=3656 GN=LOC103500081 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.3e-75
Identity = 147/168 (87.50%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKS IKSAIQ LSQLLNL+P+S  ED   +STHND+D+VTTNIAIPILPFISLCNSLIR
Sbjct: 1   MEKSAIKSAIQHLSQLLNLKPQSE-EDPHTNSTHNDDDTVTTNIAIPILPFISLCNSLIR 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           +LDKIGPTMGVLRQEIHQNIQRFEMGEELRDL+EILKKEGSEGTARSGSSCSRAFLWLIR
Sbjct: 61  VLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLIEILKKEGSEGTARSGSSCSRAFLWLIR 120

Query: 121 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFTAKLLEK+ EEPEM ME+AVEESYNLTLKPWHGWISLAAYK+ +
Sbjct: 121 SLDFTAKLLEKISEEPEMKMEEAVEESYNLTLKPWHGWISLAAYKIAL 167

[Close]

BLAST of CSPI07G12990 vs. ExPASy TrEMBL
Match: A0A6J1F981 (glycolipid transfer protein 3-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111443470 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.2e-53
Identity = 115/169 (68.05%), Postives = 133/169 (78.70%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKS I+SA +QLSQLL ++PE   ED++ ++ H D  +   NI IP+ PFISLCNSLI 
Sbjct: 1   MEKSAIRSATEQLSQLLLIKPEP--EDQRINNDHEDAATTAINIVIPVQPFISLCNSLIH 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           +LDKIGPTM VLRQEI QNI+R EM EE  DLVEILKKEG EG AR+ SSCSRAF+WLIR
Sbjct: 61  VLDKIGPTMAVLRQEIRQNIERLEMAEEWGDLVEILKKEGREGRARTESSCSRAFVWLIR 120

Query: 121 SLDFTAKLLEKML-EEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFT  LLEK+   E  MNME+AVEESYN TLKPWHGWIS AAYK+ +
Sbjct: 121 SLDFTLALLEKIASNEAGMNMERAVEESYNQTLKPWHGWISSAAYKIAL 167

[Close]

BLAST of CSPI07G12990 vs. ExPASy TrEMBL
Match: A0A6J1IN28 (glycolipid transfer protein 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476722 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.8e-51
Identity = 114/169 (67.46%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKS I+SA +QLSQLL ++PE   ED++ ++   D  +   NI IP+ PFISLCNSLI 
Sbjct: 1   MEKSAIRSATEQLSQLLLIKPEP--EDQRINNDGEDAATTAINIVIPVQPFISLCNSLIH 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           +LDKIGPTM VLRQEI QNI+R EM EE  DLVEILKKEG EG AR+ SSCSRAFLWLIR
Sbjct: 61  VLDKIGPTMAVLRQEIRQNIERLEMAEEWGDLVEILKKEGREGRARTESSCSRAFLWLIR 120

Query: 121 SLDFTAKLLEKML-EEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFT  LLEK+   E  MNME+AVEESYN TLK WHGWIS AAYK+ +
Sbjct: 121 SLDFTLALLEKITSNEAGMNMERAVEESYNRTLKAWHGWISSAAYKIAL 167

[Close]

BLAST of CSPI07G12990 vs. ExPASy TrEMBL
Match: A0A6J1IJ08 (glycolipid transfer protein 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476722 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.8e-51
Identity = 114/169 (67.46%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKS I+SA +QLSQLL ++PE   ED++ ++   D  +   NI IP+ PFISLCNSLI 
Sbjct: 1   MEKSAIRSATEQLSQLLLIKPEP--EDQRINNDGEDAATTAINIVIPVQPFISLCNSLIH 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           +LDKIGPTM VLRQEI QNI+R EM EE  DLVEILKKEG EG AR+ SSCSRAFLWLIR
Sbjct: 61  VLDKIGPTMAVLRQEIRQNIERLEMAEEWGDLVEILKKEGREGRARTESSCSRAFLWLIR 120

Query: 121 SLDFTAKLLEKML-EEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFT  LLEK+   E  MNME+AVEESYN TLK WHGWIS AAYK+ +
Sbjct: 121 SLDFTLALLEKITSNEAGMNMERAVEESYNRTLKAWHGWISSAAYKIAL 167

[Close]

BLAST of CSPI07G12990 vs. NCBI nr
Match: XP_011659127.1 (glycolipid transfer protein 3 [Cucumis sativus] >KGN44497.1 hypothetical protein Csa_016485 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 3.6e-85
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR
Sbjct: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR
Sbjct: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120

Query: 121 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYK+ +
Sbjct: 121 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKIAL 168

[Close]

BLAST of CSPI07G12990 vs. NCBI nr
Match: XP_008461499.1 (PREDICTED: glycolipid transfer protein 3 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 147/168 (87.50%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKS IKSAIQ LSQLLNL+P+S  ED   +STHND+D+VTTNIAIPILPFISLCNSLIR
Sbjct: 1   MEKSAIKSAIQHLSQLLNLKPQSE-EDPHTNSTHNDDDTVTTNIAIPILPFISLCNSLIR 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           +LDKIGPTMGVLRQEIHQNIQRFEMGEELRDL+EILKKEGSEGTARSGSSCSRAFLWLIR
Sbjct: 61  VLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLIEILKKEGSEGTARSGSSCSRAFLWLIR 120

Query: 121 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFTAKLLEK+ EEPEM ME+AVEESYNLTLKPWHGWISLAAYK+ +
Sbjct: 121 SLDFTAKLLEKISEEPEMKMEEAVEESYNLTLKPWHGWISLAAYKIAL 167

[Close]

BLAST of CSPI07G12990 vs. NCBI nr
Match: XP_038900277.1 (glycolipid transfer protein 3-like [Benincasa hispida])

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 127/174 (72.99%), Postives = 144/174 (82.76%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTT------NIAIPILPFISL 60
           MEKS IKSAI+QLS LL+++P    ED Q+++ HND  +VT       NI IP+LPFISL
Sbjct: 1   MEKSAIKSAIEQLSILLDVKP----EDHQKNNYHNDTVTVTAASTSTINIVIPVLPFISL 60

Query: 61  CNSLIRLLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRA 120
           CNSLI +LDKIGPTM VLRQEI+QN+Q FEM EE RDLVEILKKEGSEG AR+GSSCSRA
Sbjct: 61  CNSLIHVLDKIGPTMTVLRQEIYQNVQVFEMEEEWRDLVEILKKEGSEGRARTGSSCSRA 120

Query: 121 FLWLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           FLWLIRSLDFT  LLEK+  EP MNMEQAVEESYN+TLKPWHGWISLAAYK+ +
Sbjct: 121 FLWLIRSLDFTMSLLEKISIEPGMNMEQAVEESYNVTLKPWHGWISLAAYKIAL 170

[Close]

BLAST of CSPI07G12990 vs. NCBI nr
Match: XP_022937056.1 (glycolipid transfer protein 3-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 115/169 (68.05%), Postives = 133/169 (78.70%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKS I+SA +QLSQLL ++PE   ED++ ++ H D  +   NI IP+ PFISLCNSLI 
Sbjct: 1   MEKSAIRSATEQLSQLLLIKPEP--EDQRINNDHEDAATTAINIVIPVQPFISLCNSLIH 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           +LDKIGPTM VLRQEI QNI+R EM EE  DLVEILKKEG EG AR+ SSCSRAF+WLIR
Sbjct: 61  VLDKIGPTMAVLRQEIRQNIERLEMAEEWGDLVEILKKEGREGRARTESSCSRAFVWLIR 120

Query: 121 SLDFTAKLLEKML-EEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFT  LLEK+   E  MNME+AVEESYN TLKPWHGWIS AAYK+ +
Sbjct: 121 SLDFTLALLEKIASNEAGMNMERAVEESYNQTLKPWHGWISSAAYKIAL 167

[Close]

BLAST of CSPI07G12990 vs. NCBI nr
Match: XP_022976280.1 (glycolipid transfer protein 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 5.9e-51
Identity = 114/169 (67.46%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   MEKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIR 60
           MEKS I+SA +QLSQLL ++PE   ED++ ++   D  +   NI IP+ PFISLCNSLI 
Sbjct: 1   MEKSAIRSATEQLSQLLLIKPEP--EDQRINNDGEDAATTAINIVIPVQPFISLCNSLIH 60

Query: 61  LLDKIGPTMGVLRQEIHQNIQRFEMGEELRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 120
           +LDKIGPTM VLRQEI QNI+R EM EE  DLVEILKKEG EG AR+ SSCSRAFLWLIR
Sbjct: 61  VLDKIGPTMAVLRQEIRQNIERLEMAEEWGDLVEILKKEGREGRARTESSCSRAFLWLIR 120

Query: 121 SLDFTAKLLEKML-EEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           SLDFT  LLEK+   E  MNME+AVEESYN TLK WHGWIS AAYK+ +
Sbjct: 121 SLDFTLALLEKITSNEAGMNMERAVEESYNRTLKAWHGWISSAAYKIAL 167

[Close]

BLAST of CSPI07G12990 vs. TAIR 10
Match: AT3G21260.3 (Glycolipid transfer protein (GLTP) family protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 80/168 (47.62%), Postives = 109/168 (64.88%), Query Frame = 0


Query: 6   IKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIRLLDKI 65
           I SAI++LS L             +++    E      I +P+ P +S CN ++++LDKI
Sbjct: 20  IGSAIEELSVL----------SIAKTTIVTTEKEAINIINLPLKPLLSFCNIIVQVLDKI 79

Query: 66  GPTMGVLRQEIHQNIQRFEMGEE-----LRDLVEILKKEGSEGTARSGSSCSRAFLWLIR 125
           GPTM VLR +I QNIQR E   E       +LVEIL+KE  EG++R   SCSRA LWL R
Sbjct: 80  GPTMAVLRHDIDQNIQRLEKMWESDPLVYSNLVEILRKEAKEGSSRKPKSCSRAALWLTR 139

Query: 126 SLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           ++DFT  LL++++++   NMEQA+EE YNLT+KPWHGWIS AA+KV +
Sbjct: 140 AMDFTLALLQRLVKDMSQNMEQAIEECYNLTIKPWHGWISSAAFKVAL 177

[Close]

BLAST of CSPI07G12990 vs. TAIR 10
Match: AT1G21360.1 (glycolipid transfer protein 2 )

HSP 1 Score: 135.2 bits (339), Expect = 5.0e-32
Identity = 78/172 (45.35%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 2   EKSPIKSAIQQLSQLLNLRPESSGEDRQRSSTHNDEDSVTTNIAIPILPFISLCNSLIRL 61
           +K+ I++AI++LS  +  +P    E     +TH           IP+ P +S C+ +I++
Sbjct: 12  KKTEIQTAIEELSVFIVTKPADKTE-----ATH-----------IPLRPILSFCSLIIQV 71

Query: 62  LDKIGPTMGVLRQEIHQNIQRFEMGEE-----LRDLVEILKKEGSEGTARSGSSCSRAFL 121
           LDKIGPTM VLRQ+I QNIQR E   E       +L EILKKE  EGT++  +SC RA  
Sbjct: 72  LDKIGPTMAVLRQDIDQNIQRLEKFYETDSCVYSNLAEILKKEKEEGTSKMVASCGRALF 131

Query: 122 WLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAYKVII 169
           WL R++DFTA LL  + +E    ME+ VEE Y  TLKP HGWI+ AA+KV +
Sbjct: 132 WLTRTMDFTAGLLRLLSKEMSSKMEELVEECYMTTLKPHHGWIASAAFKVCL 167

[Close]

BLAST of CSPI07G12990 vs. TAIR 10
Match: AT3G21260.1 (Glycolipid transfer protein (GLTP) family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 91  DLVEILKKEGSEGTARSGSSCSRAFLWLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNL 150
           +LVEIL+KE  EG++R   SCSRA LWL R++DFT  LL++++++   NMEQA+EE YNL
Sbjct: 11  NLVEILRKEAKEGSSRKPKSCSRAALWLTRAMDFTLALLQRLVKDMSQNMEQAIEECYNL 70

Query: 151 TLKPWHGWISLAAYKVII 169
           T+KPWHGWIS AA+KV +
Sbjct: 71  TIKPWHGWISSAAFKVAL 88

[Close]

BLAST of CSPI07G12990 vs. TAIR 10
Match: AT3G21260.2 (Glycolipid transfer protein (GLTP) family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 91  DLVEILKKEGSEGTARSGSSCSRAFLWLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNL 150
           +LVEIL+KE  EG++R   SCSRA LWL R++DFT  LL++++++   NMEQA+EE YNL
Sbjct: 16  NLVEILRKEAKEGSSRKPKSCSRAALWLTRAMDFTLALLQRLVKDMSQNMEQAIEECYNL 75

Query: 151 TLKPWHGWISLAAYKVII 169
           T+KPWHGWIS AA+KV +
Sbjct: 76  TIKPWHGWISSAAFKVAL 93

[Close]

BLAST of CSPI07G12990 vs. TAIR 10
Match: AT2G33470.1 (glycolipid transfer protein 1 )

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-17
Identity = 38/124 (30.65%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 50  PFISLCNSLIRLLDKIGPTMGVLRQEIHQNIQRFEMG-----EELRDLVEILKKEGSEGT 109
           PF+ LC +++ ++DK G  M +++ +I  NI R E       ++ + L   ++ E     
Sbjct: 27  PFLELCKTILPVIDKFGAAMTLVKSDIGGNITRLEKNYLSDPDKFKYLYTFVQVEIESKI 86

Query: 110 ARSGSSCSRAFLWLIRSLDFTAKLLEKMLEEPEMNMEQAVEESYNLTLKPWHGWISLAAY 169
           A+  SSC+   LWL R++DF  +L   ++   + +M QA  +SY  TLK WHGW++ + +
Sbjct: 87  AKGSSSCTNGLLWLTRAMDFLVELFRNLVAHQDWSMPQACADSYQKTLKKWHGWLASSTF 146

The following BLAST results are available for this feature:

BLAST of CSPI07G12990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU33	2.8e-35	47.62	Glycolipid transfer protein 3 OS=Arabidopsis thaliana OX=3702 GN=GLTP3 PE=2 SV=1	[more]
Q6NLQ3	7.0e-31	45.35	Glycolipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=GLTP2 PE=2 SV=1	[more]
O22797	6.4e-16	30.65	Glycolipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=GLTP1 PE=2 SV=1	[more]

BLAST of CSPI07G12990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K855	1.8e-85	98.21	GLTP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G318970 PE=4 S...	[more]
A0A1S3CEW2	6.3e-75	87.50	glycolipid transfer protein 3 OS=Cucumis melo OX=3656 GN=LOC103500081 PE=4 SV=1	[more]
A0A6J1F981	5.2e-53	68.05	glycolipid transfer protein 3-like isoform X3 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IN28	2.8e-51	67.46	glycolipid transfer protein 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1IJ08	2.8e-51	67.46	glycolipid transfer protein 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CSPI07G12990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659127.1	3.6e-85	98.21	glycolipid transfer protein 3 [Cucumis sativus] >KGN44497.1 hypothetical protein...	[more]
XP_008461499.1	1.3e-74	87.50	PREDICTED: glycolipid transfer protein 3 [Cucumis melo]	[more]
XP_038900277.1	1.2e-59	72.99	glycolipid transfer protein 3-like [Benincasa hispida]	[more]
XP_022937056.1	1.1e-52	68.05	glycolipid transfer protein 3-like isoform X3 [Cucurbita moschata]	[more]
XP_022976280.1	5.9e-51	67.46	glycolipid transfer protein 3-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CSPI07G12990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21260.3	2.0e-36	47.62	Glycolipid transfer protein (GLTP) family protein	[more]
AT1G21360.1	5.0e-32	45.35	glycolipid transfer protein 2	[more]
AT3G21260.1	1.1e-23	60.26	Glycolipid transfer protein (GLTP) family protein	[more]
AT3G21260.2	1.1e-23	60.26	Glycolipid transfer protein (GLTP) family protein	[more]
AT2G33470.1	4.5e-17	30.65	glycolipid transfer protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036497	Glycolipid transfer protein superfamily	GENE3D	1.10.3520.10	Glycolipid transfer protein	coord: 5..170 e-value: 1.1E-31 score: 112.1
IPR036497	Glycolipid transfer protein superfamily	SUPERFAMILY	110004	Glycolipid transfer protein, GLTP	coord: 40..167
IPR014830	Glycolipid transfer protein domain	PFAM	PF08718	GLTP	coord: 47..168 e-value: 1.6E-28 score: 99.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..38
None	No IPR available	PANTHER	PTHR10219	GLYCOLIPID TRANSFER PROTEIN-RELATED	coord: 2..168
None	No IPR available	PANTHER	PTHR10219:SF34	GLYCOLIPID TRANSFER PROTEIN 3	coord: 2..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12990.1	CSPI07G12990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902389	ceramide 1-phosphate transport
biological_process	GO:0120009	intermembrane lipid transfer
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:1902387	ceramide 1-phosphate binding
molecular_function	GO:1902388	ceramide 1-phosphate transfer activity
molecular_function	GO:0120013	lipid transfer activity