CSPI07G12860 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G12860
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr7: 11320294 .. 11321437 (+)
RNA-Seq ExpressionCSPI07G12860
SyntenyCSPI07G12860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATATTTGTGAGGACAACAACCCCCAAATATCTCCACAATGGTATGATATTGTCCATTTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATTCCAAAAGACCTCATACCAATGGAATTAATTGTCCTTACTTATATACCAAAGATCATACTTTTATCTAACCGACGCGAAACTTTGATCGGATTCACAATATTTGTGAACCGATTAACCCACCAAGTGGACCATTTAAGTATTTTATGGTCTTAATAGACGCATCCACCAAATAGTAGCATATGTGCATGTAGCTCATATTCTTAAGAGCACAATTTCTTGATTATATAATTAAGAATATTCGACTTGATAATGCTAGTGAATTTACATCCCAAACATTTGATAATTATTGTATGTCTATTGGGATCAGTGTTGAACATCATGTAACTCATATTCATATACAAAATGGTTTAGCTGAATCATTTATAAAACGTTTGCAATTAATTGCTAGACCCTTGCTTACAAGAGTTAAACTCCATACATCTGTATGGGAACATGTTATTTTGAATGTTGTATCACTCATGCGTATTAGGCCAACAACTTATCACAAGTAGTCGCCATTACAATTAGCATATGACCATGAGCCAAATATTTCTCATTTGAGAACTTTTGGATGTGCAGTATATGTTCAAATTATTCTACCACAACGTACTAAGATGGGTCCTTAAAGGAGACTATGAATATATGTTGGTTTTGATTCTCCATCAATTATTAAATATTTTGATCCCCTTATGGGAGATGTGTTTATTGCATGATTTGTTAATTGTAATTTTAATGAGACAAATCTTCCAATATTAGGGAGAGGAATTAAGAAGTTGAAAAAAAAATTACATGGAATGTATCATTATTGTCTCATTTAGATCCTCGTACAGATCAATGTGAACTTGAAGTTCGAAAAATAATTCATTTACAAAATGTAGTAAATCAGTTACCAGATGCATTTGTCGATGCAAAGAAAGTAACTAAATCACATATAGTAGCTGCAAATGTTCCATCAAAGATTGATATCCCTACACAACATGTTGTCATTGATGCATCACGAACTAGCCAGAAGTGTGATAGACCAGTTGATTCCAAAGACAAAAATCCTCAGAAAAGGAATTGA

mRNA sequence

ATGGTGATATTTGTGAGGACAACAACCCCCAAATATCTCCACAATGATCCTCGTACAGATCAATGTGAACTTGAAGTTCGAAAAATAATTCATTTACAAAATGTAGTAAATCAGTTACCAGATGCATTTGTCGATGCAAAGAAAGTAACTAAATCACATATAGTAGCTGCAAATGTTCCATCAAAGATTGATATCCCTACACAACATGTTGTCATTGATGCATCACGAACTAGCCAGAAGTGTGATAGACCAGTTGATTCCAAAGACAAAAATCCTCAGAAAAGGAATTGA

Coding sequence (CDS)

ATGGTGATATTTGTGAGGACAACAACCCCCAAATATCTCCACAATGATCCTCGTACAGATCAATGTGAACTTGAAGTTCGAAAAATAATTCATTTACAAAATGTAGTAAATCAGTTACCAGATGCATTTGTCGATGCAAAGAAAGTAACTAAATCACATATAGTAGCTGCAAATGTTCCATCAAAGATTGATATCCCTACACAACATGTTGTCATTGATGCATCACGAACTAGCCAGAAGTGTGATAGACCAGTTGATTCCAAAGACAAAAATCCTCAGAAAAGGAATTGA

Protein sequence

MVIFVRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKRN*
Homology
BLAST of CSPI07G12860 vs. ExPASy TrEMBL
Match: A0A438CTC8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1564 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.7e-19
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 9   TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQ 68
           T    H DPRT+QCELEV++IIHLQN+VNQLPDAF+D KKVTKSHI AAN P++ID+P  
Sbjct: 165 TSTMTHLDPRTNQCELEVQRIIHLQNLVNQLPDAFIDTKKVTKSHIPAANTPARIDVPVG 224

Query: 69  HVVIDASRTSQKCDRPVDSKDKNPQKR 96
            +  + S+   K  RPV SKD  P+KR
Sbjct: 225 QLT-NESKIRLKRGRPVGSKDVTPRKR 250

BLAST of CSPI07G12860 vs. ExPASy TrEMBL
Match: A5AU99 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015503 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.7e-19
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 16 DPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDAS 75
          DPR +QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI  AN P++ID+P   +  + S
Sbjct: 5  DPRRNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHISVANTPARIDVPVXQLT-NES 64

Query: 76 RTSQKCDRPVDSKDKNPQKR 96
          +   KC RPVDSKD  P+KR
Sbjct: 65 KIRLKCGRPVDSKDVTPRKR 83

BLAST of CSPI07G12860 vs. ExPASy TrEMBL
Match: A0A6D2JDS3 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28746 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.2e-19
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 5  VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKID 64
          ++   P  LH DP T Q ELEVR+I+HLQN+ NQLPDAF D K VTKSHI AAN P++I+
Sbjct: 4  IKWCVPSLLHLDPPTKQSELEVRRIMHLQNIANQLPDAFADTKLVTKSHIPAANAPARIE 63

Query: 65 IPTQHVVIDASRTSQ---KCDRPVDSKDKNPQKR 96
          IP +    D +R S+   K  RPV SKDKNP+KR
Sbjct: 64 IPHERAKADDTRESKTRLKRGRPVGSKDKNPRKR 97

BLAST of CSPI07G12860 vs. ExPASy TrEMBL
Match: A0A438C2Q1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3511 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 9   TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQ 68
           T    H DPRT+QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI AAN P++ID+P  
Sbjct: 64  TSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHIPAANTPARIDVPVG 123

Query: 69  HVVIDASRTSQKCDRPVDSKDKNPQKR 96
            +  + S+   K  RPV SKD  P+KR
Sbjct: 124 QLT-NESKIRLKRGRPVGSKDVTPRKR 149

BLAST of CSPI07G12860 vs. ExPASy TrEMBL
Match: A0A438HZK0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_792 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 9   TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQ 68
           T    H DPRT+QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI AAN P++ID+P  
Sbjct: 429 TSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHIPAANTPARIDVPVG 488

Query: 69  HVVIDASRTSQKCDRPVDSKDKNPQKR 96
            +  + S+   K  RPV SKD  P+KR
Sbjct: 489 QLT-NESKIRLKRGRPVGSKDVTPRKR 514

BLAST of CSPI07G12860 vs. NCBI nr
Match: KAG7537104.1 (Zinc finger CCHC-type superfamily [Arabidopsis suecica])

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-19
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 0

Query: 5   VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKID 64
           ++ + P  LH DP T Q ELEVR+IIHLQ++ NQLPDAF D K + KSHI AANVP++I+
Sbjct: 328 IKWSVPSLLHLDPPTKQSELEVRRIIHLQSIANQLPDAFADTKTIIKSHIPAANVPARIE 387

Query: 65  IPTQHVVID---ASRTSQKCDRPVDSKDKNPQKR 96
           IP +H   D    SRT  K  RPV SKDKNP+KR
Sbjct: 388 IPQEHGKADDTRESRTRLKRGRPVGSKDKNPRKR 421

BLAST of CSPI07G12860 vs. NCBI nr
Match: KAG7560697.1 (Zinc finger CCHC-type [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 104.0 bits (258), Expect = 7.5e-19
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 5   VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKID 64
           ++   P  LH DP T Q ELEVR+I+HLQ++ NQLPDAF D K + KSHI AANVP++I+
Sbjct: 702 IKWNVPSLLHLDPPTKQSELEVRRIMHLQSIANQLPDAFADTKTIIKSHIPAANVPARIE 761

Query: 65  IPTQHVVID---ASRTSQKCDRPVDSKDKNPQKR 96
           IP +H   D    SRT  K  RPV SKDKNP+KR
Sbjct: 762 IPQEHGKADDTRESRTRLKRGRPVGSKDKNPRKR 795

BLAST of CSPI07G12860 vs. NCBI nr
Match: RVW26456.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-19
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 9   TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQ 68
           T    H DPRT+QCELEV++IIHLQN+VNQLPDAF+D KKVTKSHI AAN P++ID+P  
Sbjct: 165 TSTMTHLDPRTNQCELEVQRIIHLQNLVNQLPDAFIDTKKVTKSHIPAANTPARIDVPVG 224

Query: 69  HVVIDASRTSQKCDRPVDSKDKNPQKR 96
            +  + S+   K  RPV SKD  P+KR
Sbjct: 225 QLT-NESKIRLKRGRPVGSKDVTPRKR 250

BLAST of CSPI07G12860 vs. NCBI nr
Match: CAN71647.1 (hypothetical protein VITISV_015503 [Vitis vinifera])

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-19
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 16 DPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDAS 75
          DPR +QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI  AN P++ID+P   +  + S
Sbjct: 5  DPRRNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHISVANTPARIDVPVXQLT-NES 64

Query: 76 RTSQKCDRPVDSKDKNPQKR 96
          +   KC RPVDSKD  P+KR
Sbjct: 65 KIRLKCGRPVDSKDVTPRKR 83

BLAST of CSPI07G12860 vs. NCBI nr
Match: KAF7152015.1 (hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 14  HNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIP---TQHV 73
           H DPRT+QCELEV++IIHLQ++ N+LPDAF D K+VTKSHI AAN+P++I++P   T   
Sbjct: 475 HLDPRTNQCELEVQRIIHLQSIANRLPDAFTDTKRVTKSHIPAANIPARIEVPVGQTTCT 534

Query: 74  VIDASRTSQKCDRPVDSKDKNPQKR 96
             D S+T QK  RPV +KDK P+KR
Sbjct: 535 TADESKTRQKRGRPVGAKDKFPRKR 559

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438CTC84.7e-1960.92Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5AU994.7e-1962.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015503 PE=4 SV=1[more]
A0A6D2JDS36.2e-1957.45Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28746 ... [more]
A0A438C2Q11.4e-1859.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438HZK01.4e-1859.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
KAG7537104.12.6e-1958.51Zinc finger CCHC-type superfamily [Arabidopsis suecica][more]
KAG7560697.17.5e-1957.45Zinc finger CCHC-type [Arabidopsis thaliana x Arabidopsis arenosa][more]
RVW26456.19.8e-1960.92Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
CAN71647.19.8e-1962.50hypothetical protein VITISV_015503 [Vitis vinifera][more]
KAF7152015.11.3e-1860.00hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G12860.1CSPI07G12860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding