CSPI07G12480 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G12480
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein GIGANTEA-like isoform X1
Location	Chr7: 10769646 .. 10769923 (+)
RNA-Seq Expression	CSPI07G12480
Synteny	CSPI07G12480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAACGACTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATTCTGCGAATCTTGACTCATTACAATCGCCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

mRNA sequence

AGAACGACTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATTCTGCGAATCTTGACTCATTACAATCGCCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

Coding sequence (CDS)

ATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

Protein sequence

MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW*

Homology

[Close]

BLAST of CSPI07G12480 vs. ExPASy Swiss-Prot
Match: Q9SQI2 (Protein GIGANTEA OS=Arabidopsis thaliana OX=3702 GN=GI PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 9.2e-16
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 2   ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDY 61
           E++NG+TER+      T+         G P Q ERKP+RPLSPWI+DILLAAPLGIRSDY
Sbjct: 150 EQQNGDTERNCLSKATTSGSPTSEPKAGSPTQHERKPLRPLSPWISDILLAAPLGIRSDY 209

Query: 62  FRW 65
           FRW
Sbjct: 210 FRW 212

[Close]

BLAST of CSPI07G12480 vs. ExPASy Swiss-Prot
Match: Q9AWL7 (Protein GIGANTEA OS=Oryza sativa subsp. japonica OX=39947 GN=GI PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-13
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQ-ERKPVRPLSPWITDILLAAPLGIRS 60
           ++ ++ E E SS+   A++ ++ ++   G P+ + +RKP+RPLSPWITDILLAAPLGIRS
Sbjct: 149 VDHQHSEAECSSTSDQASSCESMEKRANGSPRNEPDRKPLRPLSPWITDILLAAPLGIRS 208

Query: 61  DYFRW 65
           DYFRW
Sbjct: 209 DYFRW 213

[Close]

BLAST of CSPI07G12480 vs. ExPASy TrEMBL
Match: A0A0A0K6B6 (LATE BLOOMER 1 OS=Cucumis sativus OX=3659 GN=Csa_7G293230 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 38  MERKNGETERSSSGSRATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 97

Query: 61  YFRW 65
           YFRW
Sbjct: 98  YFRW 101

[Close]

BLAST of CSPI07G12480 vs. ExPASy TrEMBL
Match: A0A5D3CSC9 (Protein GIGANTEA-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00240 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-26
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 145 MEQKNGETERSSSCSLATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 204

Query: 61  YFRW 65
           YFRW
Sbjct: 205 YFRW 208

[Close]

BLAST of CSPI07G12480 vs. ExPASy TrEMBL
Match: A0A1S3CG99 (protein GIGANTEA-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500402 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-26
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 147 MEQKNGETERSSSCSLATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 206

Query: 61  YFRW 65
           YFRW
Sbjct: 207 YFRW 210

[Close]

BLAST of CSPI07G12480 vs. ExPASy TrEMBL
Match: A0A6J1IPZ2 (protein GIGANTEA-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477137 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.9e-21
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           ME+KNGETERS+SG +AT SDT+D E V +P Q ERKP+RPLSPWITDILLAAPLGIRSD
Sbjct: 147 MEQKNGETERSNSGYVATNSDTNDGEFVQVPLQHERKPIRPLSPWITDILLAAPLGIRSD 206

Query: 61  YFRW 65
           YFRW
Sbjct: 207 YFRW 210

[Close]

BLAST of CSPI07G12480 vs. ExPASy TrEMBL
Match: A0A6J1IKR9 (protein GIGANTEA-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477137 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.9e-21
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           ME+KNGETERS+SG +AT SDT+D E V +P Q ERKP+RPLSPWITDILLAAPLGIRSD
Sbjct: 57  MEQKNGETERSNSGYVATNSDTNDGEFVQVPLQHERKPIRPLSPWITDILLAAPLGIRSD 116

Query: 61  YFRW 65
           YFRW
Sbjct: 117 YFRW 120

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: XP_011659108.1 (protein GIGANTEA isoform X1 [Cucumis sativus] >KAE8646179.1 hypothetical protein Csa_016390 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 147 MERKNGETERSSSGSRATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 206

Query: 61  YFRW 65
           YFRW
Sbjct: 207 YFRW 210

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: XP_031744582.1 (protein GIGANTEA isoform X2 [Cucumis sativus] >XP_031744583.1 protein GIGANTEA isoform X2 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
          MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 1  MERKNGETERSSSGSRATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 60

Query: 61 YFRW 65
          YFRW
Sbjct: 61 YFRW 64

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: KAA0059525.1 (protein GIGANTEA-like isoform X1 [Cucumis melo var. makuwa] >TYK14108.1 protein GIGANTEA-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 145 MEQKNGETERSSSCSLATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 204

Query: 61  YFRW 65
           YFRW
Sbjct: 205 YFRW 208

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: XP_008461912.1 (PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSD 60
           ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSD
Sbjct: 147 MEQKNGETERSSSCSLATTSDTDDRELVGVPQQQERKPVRPLSPWITDILLAAPLGIRSD 206

Query: 61  YFRW 65
           YFRW
Sbjct: 207 YFRW 210

[Close]

BLAST of CSPI07G12480 vs. NCBI nr
Match: XP_038898094.1 (protein GIGANTEA-like isoform X1 [Benincasa hispida] >XP_038898096.1 protein GIGANTEA-like isoform X1 [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 9.8e-23
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1   MERK--------NGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLA 60
           MERK        NGETERS+SGSLATTS++DD ELVG+PQQQERKPVRPLSPWITDILLA
Sbjct: 147 MERKNGETGRSNNGETERSNSGSLATTSNSDDGELVGVPQQQERKPVRPLSPWITDILLA 206

Query: 61  APLGIRSDYFRW 65
           APLGIRSDYFRW
Sbjct: 207 APLGIRSDYFRW 218

[Close]

BLAST of CSPI07G12480 vs. TAIR 10
Match: AT1G22770.1 (gigantea protein (GI) )

HSP 1 Score: 83.6 bits (205), Expect = 6.5e-17
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 2   ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDY 61
           E++NG+TER+      T+         G P Q ERKP+RPLSPWI+DILLAAPLGIRSDY
Sbjct: 150 EQQNGDTERNCLSKATTSGSPTSEPKAGSPTQHERKPLRPLSPWISDILLAAPLGIRSDY 209

Query: 62  FRW 65
           FRW
Sbjct: 210 FRW 212

The following BLAST results are available for this feature:

BLAST of CSPI07G12480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQI2	9.2e-16	60.32	Protein GIGANTEA OS=Arabidopsis thaliana OX=3702 GN=GI PE=1 SV=2	[more]
Q9AWL7	3.3e-13	53.85	Protein GIGANTEA OS=Oryza sativa subsp. japonica OX=39947 GN=GI PE=2 SV=2	[more]

BLAST of CSPI07G12480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6B6	9.2e-27	96.88	LATE BLOOMER 1 OS=Cucumis sativus OX=3659 GN=Csa_7G293230 PE=4 SV=1	[more]
A0A5D3CSC9	6.0e-26	95.31	Protein GIGANTEA-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CG99	6.0e-26	95.31	protein GIGANTEA-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500402 PE=4 SV...	[more]
A0A6J1IPZ2	9.9e-21	79.69	protein GIGANTEA-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477137 PE=...	[more]
A0A6J1IKR9	9.9e-21	79.69	protein GIGANTEA-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477137 PE=...	[more]

BLAST of CSPI07G12480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659108.1	1.9e-26	96.88	protein GIGANTEA isoform X1 [Cucumis sativus] >KAE8646179.1 hypothetical protein...	[more]
XP_031744582.1	1.9e-26	96.88	protein GIGANTEA isoform X2 [Cucumis sativus] >XP_031744583.1 protein GIGANTEA i...	[more]
KAA0059525.1	1.2e-25	95.31	protein GIGANTEA-like isoform X1 [Cucumis melo var. makuwa] >TYK14108.1 protein ...	[more]
XP_008461912.1	1.2e-25	95.31	PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo]	[more]
XP_038898094.1	9.8e-23	81.94	protein GIGANTEA-like isoform X1 [Benincasa hispida] >XP_038898096.1 protein GIG...	[more]

BLAST of CSPI07G12480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22770.1	6.5e-17	60.32	gigantea protein (GI)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026211	GIGANTEA	PRINTS	PR02081	GIGANTEA	coord: 56..64 score: 47.37 coord: 36..56 score: 90.84
IPR026211	GIGANTEA	PANTHER	PTHR36319	PROTEIN GIGANTEA	coord: 2..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..27
None	No IPR available	PANTHER	PTHR36319:SF1	PROTEIN GIGANTEA	coord: 2..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12480.1	CSPI07G12480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009637	response to blue light
biological_process	GO:0009409	response to cold
biological_process	GO:0010218	response to far red light
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0010378	temperature compensation of the circadian clock
biological_process	GO:2000028	regulation of photoperiodism, flowering
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005654	nucleoplasm