CSPI07G08970 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G08970
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationChr7: 6802091 .. 6807919 (+)
RNA-Seq ExpressionCSPI07G08970
SyntenyCSPI07G08970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATAACGTAGACTTGAAGCGTCATGATGTGGAGTATGCAGTTGGCGATATGGTCTTCCTGAAGATTAGGCCCTATAGACAGATCTCATTACGACAAAAGAAAAATGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCCGCTTCCATCCATCCAGTGTTTCATGTGTCCCAACTCAAAAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACAAGTGGAAATCTATACCGGAGGAAATATTTGGGCACTCGAAGAATAAAAGAGGGAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATGACAAGCTCCAGCACAGCCTAGAAGCAAAAAGAAAGGCGTTAAACATAACACAGGCCGGCAAAATCATACTCAGAACAAAATATATTCTATACTGACATTATTTTAGATATGCTCAGCATCATGCTTCTGCCTCAAAAAGTCAAAATAAGCTAGAGAGAGAAAAAAAAGAGAGATGAACAAAAGGATTTTGGAACTTCCTCTTTGTGAGTGTGTGTGTGTGGCAGCTGTAAATTAATTTCCTATGAGTTTCCTTAACACCCAAATGTTGTAGGGTCAAGCGGATTATCCCGTGAGATTAGTCGAGGGTGTGTGAGCTGGCCTAGAATCTCACAAATATCAAGAAAAAGAAAACCTTGCCACCCATCCACTTTGCAACAAAGATTCATGAAATTAAGGGGTAAAAGGAAAAAGGTATAGAAGCGGATAGCATCTTGGCTTCTTATTAAAATGGAATAGTGTAACCAGACCTGGAATTTGTAAAGCATCCATCCCAGGTAATTCTTCCAATTTCAATCCTCCAACCCTCTTCCTAACACAAGTAAATTAAAGACAACTTATCAAATAGAAGACCAACAGTCAACATAAATGATGTGGAGTATGAAGTTGGCGATATGGTCTTCCTGAAAGATTAGGCCCATAGACAGATCTCATTACGACAAAAGAAAAATGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCCGCTTCCATCCATCCAGTGTTTCATGTGTCCCAACTCAACAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACGAGTGGAAATCTATACCGGAGGAAATATTTGGGTACTCGAAGAATAAAAGAGGAAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATGACAAGCTCCAGTACAGCCTAGAAGCAAAAAGAAAGGCGTTAAACATAACACAGGTCGAAAAAATCATACTCAGAACAGAATATATTCTATACTAACATTATTTTAGATATGCTCAGAATCATGCTTCTGCCTCAAAAAGTCAAAATAAGCTAGAGAGAGAAAAAAAAAGAGAGATGAACAAAAGGATTTTGGAACTTCCTCTTTGTGAGTGTGTGTGTGTGGCAGCTGTAAATTAATTTCCTATGAGTTTCCTTAACACCCAAATGTTGTAGGGTCAAGCGGATTATCCCGTGAGATTAGTCGAGGGTGTGTGAGCTGGCCTAGACACTCACAAATATCAAGAAAAAGAAAACCTTGCCACCCATCCACTTTGGAACAAAGATTCATGAAATTAAGGGGTAAAAAGAAAAAGGTATAGAAGCGGATAACATCTTGGCTTCTTATTAAAATGGAATAGTGTAACCAGACCTGGAATTTGTAAAGCATCCATCCCAGGTAATTCTTCCAATTTCAATCCTCCACGCTCATGATTGTCGTTCAACTCTTTTGCGACGATATCCATCTCACGCGACGACCTCTCACGAGCAAATCCATCACGCGACCAAACCCATCTCTGAAAGCTATTTAAACGATTACGACGACAATATTGGAATTACAACGATGATTTCTCATCCCAAACGACAAGGAGAGCGATTTGGTATTCAAGGACGATGACGTCGGTAAGGTTGAACTTTTTTTTAATCGTAATTTTTTATATCTCTGCTCATTGTCTGTGTCAACTCACCATTGTTGATTTTGTTTTTCAGAAACCCGCTCCCCAACTTGATTTTGTTTTTATGGCAATAACCCCCTTCTTGGTTTTCTTTTCTTGCAGACGACCACATCGGCAAACCCCATCTGTTTTCTTGCGGACGACCACACCGATAGATTTGTGTAAGATGAAGCGAAGTACCGAACAATGTAAGGTTTTTCTCTCTCTCTGAATTTTGAAGTTTATGTTTGTTCGACGATTTCAAAGTTTTTCTTGTTGTTTTCGTTCTTGTGTTTCTTGTTGTAATTACAGGAATTTATTCTATTTGTATAAGATTTTCTTTAGGTTGCTGGATCTTTGGATCATGGGTATTGGTTTTGATTGTGGTGTTTATCTTTGATCTCATTGCTTTTGCACTTGTTGTTGCTATATGTATTTGGTGCAACTCTCTATTATATTGATCATTTTTATTATTTGATGAATATTGTTTTTCTGATAAGAAGTATTATTGGGAATTTGGAAGGGTTTGTGATTTCCATACTGGTTGTGTTGAAATGGCTTGTTGATTTTTGGTTTAAGTTATATGTAGGTGGCTTTTGTATAGAAATGGTTTAGGTCACCAATTTGTGATTAAATAGAAGAAATTTGTAGAGGAAATTTTTAGCAAACAAATTAGATTTTTTGTTTCTTCATCCTGTCGCCTGACGTAGTTTTTAGGACTTAGGAATCTCATTTTTGTGTTCTTTTATGTTTCTAATTTGAACCATCCATGAACAGCTTGGTATGTTAAGTTTCTAATCACAAGAGAAATGGATTTTATGATATTAGGGCTTTTGATTCTGATCCTAATGTTATTTTGATGTGAAGAAGAAAGTGTTAGGGCTTATAATGTGTGTATCTTATTCCTAAAAGTCAATTCTTCTTTGGCAGGCCATGATCGCTCAATCAGGCAATTCTACATTTTGTGCCTATGATTCTGATATTGCAATTGCATTAGGTGTGAGTTCACTTCTGATTCTATTTGCTAACCAAGTGATTTTAATGGTGGCACGTCGATGTTTATGTTGTGGGAGAGGATTATGACACTGCGTTGCTAATACTTTTAGCGACATTTTTTTTCTCATTTTAGTAACGCTTTTTGTGCGTTAACTAAAATCTCAATTTTTTGTAGTGTTAAAGAATTGGGTAGGGACTTCTCAGCTACTCCATTCAATGACAATCTTTGTAGTGTGTTAAAATTGGTATTTATTCTATTTTTGTGAAACTTGAAGCCACCATATTTGTTTTTGTATTTTCTGCACACTATATGATGTCTTGTGAGCTTGTTCGAAAGAGATATGAGAGTTTTGAACATTGAGATTGGTGCATATTGAAAAGAGAGACAACGAGTTCACACCAACTTACGTGTTCACATTGGCTGGAATGGGCCACTCTTTGATGGCTCGAATTTTCTCCGGATCCACCTCCACTCCTCCCGAAATAATATGCCCAAGATAATCCACTCTTGATCTAACAAAACTGCATTTCTTCTTGTTCGCATACTATTGAAAAGAGAGACAACGAGTTCACATCAATTTACGTGGAAACCCGAGTACCGGGAGAAAAACCACGATTGTTTGTGTTGTTATTATTTTCTAATGAATAAAACAATAGGTATAGGGGAGAATAAATAGAGTACACAATGGAATAAAAAAGGAAAAGATTTAGGAAAATAAGGAATACATTCCCATAATCTTTCCATAATTATTCTAGGATTCTAACAAGGAAAAAGCCTAGAAAAAAGGAAAGAATTCCAACAGTGCATAAATAGAGTTTTGAGATTGTTGCTTGCCATGAGTTGAGGTATGGTATGTTCTCGGTTAGTATCCAAGATTCTTAAGAGCTCACTGGAAGTTCTTGAAAACTGTTGTGAACAAGTTGTTCGAGTTCACGGACGAAACACATTCGGGAGTGCAGGTTATTGTTGGTTTTCTCTATACTATTTTAAGACATAATGATGGATCTCCCAAATTAGGTTTTCTCTATACTATTTTCTTTTATTATTATTAATTTTCTTGTTTTTGTTTTTTCTTTCAACATTTCAGGTATTTTTTATGCGAATTCATCTTGTTTAAAAATTAACTTATCTCAACCATTATTTGTGATAGACTGATAATTTGTTTGCAATGGTTTCTCTGATTGCTCGCTACACAGAAATGGACTGAAATTATTGTTTAGGCACGCCAAAGTTGGAATTTCTAAAAGATCGAGATGTAATAAGAACAATGCTTAAGATACTACAAGTATGATCGGACTCTGAAGTTTTGTCTAAGTTGTCCTCCACAAGATAAATCTTTAATGCATTGTCAATAATGCCTTTTCAAATCCTTTTGAGTTTCTAAAGATATGATCGTTGGCCTTTTTTCCCTCCTAAGTTGTTTAATAGCGTAAATATATATCCATACTTGAATAAATTTTTGTGCTTGTATTTCCTCTTAAATTCATTTCTTTATCATACAAAATCTCCTCCATTTAAGTTCACTCCTTACCTAATTATATGCATTTTCTGTTGGAGCTTATAAAAGTTAATTGATTGAGTTGAAGTTGTGGCTCTTAGATGGAATTCTTGTTAGACTACTTGGTCATTGAAGAACAAATTTGTTAATTGATATTCTTACATGCAGACAAATACAAGTATTGCCAGTTCATTTGAAACCTATTTCTTACCCTAGATATCTTTGATCTTTTTGGATATGCTCAATGTGTACATATATTGCTATTGTGTATGTTATGAATGCCCTCTTAAAATTGCAAGATACATAACACACAACATCTATTTTCCTTATCATAAGTGGTTTCTTTGGTTATTGAATGTGCTTGCAGAATGTATAATAAACTTATATCAAGTAGCACTGCTGGAGGAGGGCGTTACACATCTAAAACGTCCTACGTTACCTTCTAAGGTAAAGTTTTATGATGGTGATTCCTGTTCAATTCTGCTTTAAGTTTATCCTTTTTATTTACCTCTCTTTTATGCTTATTATGATGGTGCTTTGTGTTTATGTTTTTAAAGTGTTCCATTATTTGTTTTTTAGAAGCATGCTTTGATTGTGTGCCTTTGCAAATGATTACAAAAAATTATTTAACACTTGATAAATAATTTTGAGAAGCATGCTCCGATTGTGTTTCATTATTTTTCTTTTCTTTTTTTTTTTTTGGGTAAAACTTGATAAATTCTAGATAGATCTATTGTAGGTTGTTTCAAGGATTATTTGGTGGAACTTACTATAACGCTTCATGAACTATTTAACATTTGGATAGACGTAATTATTGAGGTTTAGAACATGATTTAATGTTTTAGAACACTCTTATAGTTAGTAATTTTATCTATCTTTGTAAACTAAGAATAGTTTGTGGAGAGACATGAATAGCCTACTACTCTTGTTGGTGTGAATTAGTTAATATCCACTATTATTAGTGTCTACATAATCATTCATTGATATTTCTTTTTACAAATTTAGGTAGGTGAATGAAATGGTGTCTTAACTAGAGGACTAAAGAACCAACGATGACAGTTAGCTCATACCTAGCTATATAATTGTGAACACTTATATTGATTTTGAGGGTTAATTTGTGTTGTTGGTACAATTACAAAATATTTTATTTACCTTTATGTATCTTTTAGGCTGAAACTTTAATTAAGTAA

mRNA sequence

ATGAAAAATAACGTAGACTTGAAGCGTCATGATGTGGAGTATGCAGTTGGCGATATGGTCTTCCTGAAGATTAGGCCCTATAGACAGATCTCATTACGACAAAAGAAAAATGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCCGCTTCCATCCATCCAGTGTTTCATGTGTCCCAACTCAAAAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACAAGTGGAAATCTATACCGGAGGAAATATTTGGGCACTCGAAGAATAAAAGAGGGAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATGACAAGCTCCAGCACAGCCTAGAAGCAAAAAGAAAGGCTGTAACCAGACCTGGAATTTGTAAAGCATCCATCCCAGGTAATTCTTCCAATTTCAATCCTCCAACCCTCTTCCTAACACAAGCCCATAGACAGATCTCATTACGACAAAAGAAAAATGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCCGCTTCCATCCATCCAGTGTTTCATGTGTCCCAACTCAACAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACGAGTGGAAATCTATACCGGAGGAAATATTTGGGTACTCGAAGAATAAAAGAGGAAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATGACAAGCTCCAGTACAGCCTAGAAGCAAAAAGAAAGGCGTTAAACATAACACAGCTATTTAAACGATTACGACGACAATATTGGAATTACAACGATGATTTCTCATCCCAAACGACAAGGAGAGCGATTTGGTATTCAAGGACGATGACGTCGAAACCCGCTCCCCAACTTGATTTTGTTTTTATGGCAATAACCCCCTTCTTGGTTTTCTTTTCTTGCAGACGACCACATCGGCAAACCCCATCTGTTTTCTTGCGGACGACCACACCGATAGATTTGTGTAAGATGAAGCGAAGTACCGAACAATGTAAGGCCATGATCGCTCAATCAGGCAATTCTACATTTTGTGCCTATGATTCTGATATTGCAATTGCATTAGAATGTATAATAAACTTATATCAAGTAGCACTGCTGGAGGAGGGCGTTACACATCTAAAACGTCCTACGTTACCTTCTAAGGCTGAAACTTTAATTAAGTAA

Coding sequence (CDS)

ATGAAAAATAACGTAGACTTGAAGCGTCATGATGTGGAGTATGCAGTTGGCGATATGGTCTTCCTGAAGATTAGGCCCTATAGACAGATCTCATTACGACAAAAGAAAAATGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCCGCTTCCATCCATCCAGTGTTTCATGTGTCCCAACTCAAAAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACAAGTGGAAATCTATACCGGAGGAAATATTTGGGCACTCGAAGAATAAAAGAGGGAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATGACAAGCTCCAGCACAGCCTAGAAGCAAAAAGAAAGGCTGTAACCAGACCTGGAATTTGTAAAGCATCCATCCCAGGTAATTCTTCCAATTTCAATCCTCCAACCCTCTTCCTAACACAAGCCCATAGACAGATCTCATTACGACAAAAGAAAAATGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCCGCTTCCATCCATCCAGTGTTTCATGTGTCCCAACTCAACAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACGAGTGGAAATCTATACCGGAGGAAATATTTGGGTACTCGAAGAATAAAAGAGGAAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATGACAAGCTCCAGTACAGCCTAGAAGCAAAAAGAAAGGCGTTAAACATAACACAGCTATTTAAACGATTACGACGACAATATTGGAATTACAACGATGATTTCTCATCCCAAACGACAAGGAGAGCGATTTGGTATTCAAGGACGATGACGTCGAAACCCGCTCCCCAACTTGATTTTGTTTTTATGGCAATAACCCCCTTCTTGGTTTTCTTTTCTTGCAGACGACCACATCGGCAAACCCCATCTGTTTTCTTGCGGACGACCACACCGATAGATTTGTGTAAGATGAAGCGAAGTACCGAACAATGTAAGGCCATGATCGCTCAATCAGGCAATTCTACATTTTGTGCCTATGATTCTGATATTGCAATTGCATTAGAATGTATAATAAACTTATATCAAGTAGCACTGCTGGAGGAGGGCGTTACACATCTAAAACGTCCTACGTTACCTTCTAAGGCTGAAACTTTAATTAAGTAA

Protein sequence

MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQAHRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLNKMVGDHQLVQTDMLPYVTETHEWKSIPEEIFGYSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQYSLEAKRKALNITQLFKRLRRQYWNYNDDFSSQTTRRAIWYSRTMTSKPAPQLDFVFMAITPFLVFFSCRRPHRQTPSVFLRTTTPIDLCKMKRSTEQCKAMIAQSGNSTFCAYDSDIAIALECIINLYQVALLEEGVTHLKRPTLPSKAETLIK*
Homology
[Close]
BLAST of CSPI07G08970 vs. ExPASy TrEMBL
Match: A0A5D3D4I0 (IST1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00160 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.0e-61
Identity = 127/263 (48.29%), Postives = 165/263 (62.74%), Query Frame = 0 

Query: 1   MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
           +K + D KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYK
Sbjct: 115 IKRSADQKRRDVEYEVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYNIIEKIGPVAYK 174

Query: 61  LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
           LELPAS+SIHPVFHVSQLKK+ G+HQ V+   LPYVTE H+W+ IPEEI G+ KNK    
Sbjct: 175 LELPASSSIHPVFHVSQLKKLKGEHQ-VEVAELPYVTENHEWQEIPEEICGYQKNKVAGW 234

Query: 121 EVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQA 180
           +VL+KW+GLP  E TWEDYD++Q                                   Q 
Sbjct: 235 DVLVKWKGLPRKETTWEDYDEIQ-----------------------------------QR 294

Query: 181 HRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLNKMVGDHQ 240
           + ++ L  K N +                 +AY L+ P  A+IHPVFHVSQL + +    
Sbjct: 295 YPELHLEDKVNLEKG---------------LAYGLQFPGEATIHPVFHVSQLKRALSSIM 325

Query: 241 LVQTDMLPYVTETHEWKSIPEEI 264
           LV++ +LP  T+  +WK++PEE+
Sbjct: 355 LVES-LLPQFTDVFKWKAVPEEL 325

[Close]
BLAST of CSPI07G08970 vs. ExPASy TrEMBL
Match: A0A5D3CRH2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G001280 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.2e-49
Identity = 96/143 (67.13%), Postives = 116/143 (81.12%), Query Frame = 0 

Query: 1    MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
            MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYK
Sbjct: 998  MKRSAYQKRRDVEYEVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAYK 1057

Query: 61   LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
            LELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H+W+ IPEEI G+ KNK    
Sbjct: 1058 LELPASSSIHPVFHVSQLKKLKGEHQ-VEVAERPYVTENHEWQEIPEEICGYQKNKVAGW 1117

Query: 121  EVLIKWQGLPPHEATWEDYDKLQ 144
            +VL+KW+GL   E TWEDYD++Q
Sbjct: 1118 DVLVKWKGLSRKETTWEDYDEIQ 1139

[Close]
BLAST of CSPI07G08970 vs. ExPASy TrEMBL
Match: A0A5A7UFA3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1184G00340 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.2e-49
Identity = 96/143 (67.13%), Postives = 116/143 (81.12%), Query Frame = 0 

Query: 1    MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
            MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYK
Sbjct: 1009 MKRSAYQKRRDVEYEVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAYK 1068

Query: 61   LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
            LELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H+W+ IPEEI G+ KNK    
Sbjct: 1069 LELPASSSIHPVFHVSQLKKLKGEHQ-VEVAERPYVTENHEWQEIPEEICGYQKNKVAGW 1128

Query: 121  EVLIKWQGLPPHEATWEDYDKLQ 144
            +VL+KW+GL   E TWEDYD++Q
Sbjct: 1129 DVLVKWKGLSRKETTWEDYDEIQ 1150

[Close]
BLAST of CSPI07G08970 vs. ExPASy TrEMBL
Match: A0A5A7VFH2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00290 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.6e-47
Identity = 90/140 (64.29%), Postives = 114/140 (81.43%), Query Frame = 0 

Query: 1   MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
           MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+K
Sbjct: 544 MKMSADQKKREVEYMVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAHK 603

Query: 61  LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
           LE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE HKW++IPEEI+G+ KNK    
Sbjct: 604 LEFPESLSIHPIFRVLQLKKMKGEHQM-EVAELPYITENHKWQAIPEEIYGYQKNKVAGW 663

Query: 121 EVLIKWQGLPPHEATWEDYD 141
           +VL+KW+GL  +EATWEDYD
Sbjct: 664 DVLVKWKGLSGNEATWEDYD 682

[Close]
BLAST of CSPI07G08970 vs. ExPASy TrEMBL
Match: A0A5D3BKM7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00540 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.6e-47
Identity = 90/140 (64.29%), Postives = 114/140 (81.43%), Query Frame = 0 

Query: 1   MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
           MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+K
Sbjct: 609 MKMSADQKKREVEYMVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAHK 668

Query: 61  LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
           LE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE HKW++IPEEI+G+ KNK    
Sbjct: 669 LEFPESLSIHPIFRVLQLKKMKGEHQM-EVAELPYITENHKWQAIPEEIYGYQKNKVAGW 728

Query: 121 EVLIKWQGLPPHEATWEDYD 141
           +VL+KW+GL  +EATWEDYD
Sbjct: 729 DVLVKWKGLSGNEATWEDYD 747

[Close]
BLAST of CSPI07G08970 vs. NCBI nr
Match: KAA0039185.1 (IST1-like protein [Cucumis melo var. makuwa] >TYK18457.1 IST1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 1.7e-60
Identity = 127/263 (48.29%), Postives = 165/263 (62.74%), Query Frame = 0 

Query: 1   MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
           +K + D KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYK
Sbjct: 115 IKRSADQKRRDVEYEVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYNIIEKIGPVAYK 174

Query: 61  LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
           LELPAS+SIHPVFHVSQLKK+ G+HQ V+   LPYVTE H+W+ IPEEI G+ KNK    
Sbjct: 175 LELPASSSIHPVFHVSQLKKLKGEHQ-VEVAELPYVTENHEWQEIPEEICGYQKNKVAGW 234

Query: 121 EVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQA 180
           +VL+KW+GLP  E TWEDYD++Q                                   Q 
Sbjct: 235 DVLVKWKGLPRKETTWEDYDEIQ-----------------------------------QR 294

Query: 181 HRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLNKMVGDHQ 240
           + ++ L  K N +                 +AY L+ P  A+IHPVFHVSQL + +    
Sbjct: 295 YPELHLEDKVNLEKG---------------LAYGLQFPGEATIHPVFHVSQLKRALSSIM 325

Query: 241 LVQTDMLPYVTETHEWKSIPEEI 264
           LV++ +LP  T+  +WK++PEE+
Sbjct: 355 LVES-LLPQFTDVFKWKAVPEEL 325

[Close]
BLAST of CSPI07G08970 vs. NCBI nr
Match: TYK14463.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 1.9e-48
Identity = 96/143 (67.13%), Postives = 116/143 (81.12%), Query Frame = 0 

Query: 1    MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
            MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYK
Sbjct: 998  MKRSAYQKRRDVEYEVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAYK 1057

Query: 61   LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
            LELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H+W+ IPEEI G+ KNK    
Sbjct: 1058 LELPASSSIHPVFHVSQLKKLKGEHQ-VEVAERPYVTENHEWQEIPEEICGYQKNKVAGW 1117

Query: 121  EVLIKWQGLPPHEATWEDYDKLQ 144
            +VL+KW+GL   E TWEDYD++Q
Sbjct: 1118 DVLVKWKGLSRKETTWEDYDEIQ 1139

[Close]
BLAST of CSPI07G08970 vs. NCBI nr
Match: KAA0052896.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 1.9e-48
Identity = 96/143 (67.13%), Postives = 116/143 (81.12%), Query Frame = 0 

Query: 1    MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
            MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYK
Sbjct: 1009 MKRSAYQKRRDVEYEVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAYK 1068

Query: 61   LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
            LELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H+W+ IPEEI G+ KNK    
Sbjct: 1069 LELPASSSIHPVFHVSQLKKLKGEHQ-VEVAERPYVTENHEWQEIPEEICGYQKNKVAGW 1128

Query: 121  EVLIKWQGLPPHEATWEDYDKLQ 144
            +VL+KW+GL   E TWEDYD++Q
Sbjct: 1129 DVLVKWKGLSRKETTWEDYDEIQ 1150

[Close]
BLAST of CSPI07G08970 vs. NCBI nr
Match: TYJ99843.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 1.8e-46
Identity = 90/140 (64.29%), Postives = 114/140 (81.43%), Query Frame = 0 

Query: 1   MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
           MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+K
Sbjct: 609 MKMSADQKKREVEYMVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAHK 668

Query: 61  LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
           LE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE HKW++IPEEI+G+ KNK    
Sbjct: 669 LEFPESLSIHPIFRVLQLKKMKGEHQM-EVAELPYITENHKWQAIPEEIYGYQKNKVAGW 728

Query: 121 EVLIKWQGLPPHEATWEDYD 141
           +VL+KW+GL  +EATWEDYD
Sbjct: 729 DVLVKWKGLSGNEATWEDYD 747

[Close]
BLAST of CSPI07G08970 vs. NCBI nr
Match: KAA0066054.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 1.8e-46
Identity = 90/140 (64.29%), Postives = 114/140 (81.43%), Query Frame = 0 

Query: 1   MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYK 60
           MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+K
Sbjct: 544 MKMSADQKKREVEYMVGDMVFLKIRPYRQVSLRKRRNEKLAPKFFGPYKIIEKIGPVAHK 603

Query: 61  LELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIFGHSKNKRGSC 120
           LE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE HKW++IPEEI+G+ KNK    
Sbjct: 604 LEFPESLSIHPIFRVLQLKKMKGEHQM-EVAELPYITENHKWQAIPEEIYGYQKNKVAGW 663

Query: 121 EVLIKWQGLPPHEATWEDYD 141
           +VL+KW+GL  +EATWEDYD
Sbjct: 664 DVLVKWKGLSGNEATWEDYD 682

The following BLAST results are available for this feature:
BLAST of CSPI07G08970 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G08970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D4I08.0e-6148.29IST1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00... [more]
A0A5D3CRH29.2e-4967.13Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UFA39.2e-4967.13Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VFH28.6e-4764.29Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BKM78.6e-4764.29Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of CSPI07G08970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039185.11.7e-6048.29IST1-like protein [Cucumis melo var. makuwa] >TYK18457.1 IST1-like protein [Cucu... [more]
TYK14463.11.9e-4867.13Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052896.11.9e-4867.13Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ99843.11.8e-4664.29ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066054.11.8e-4664.29ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of CSPI07G08970 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 255..314
e-value: 0.006
score: 25.8
coord: 101..156
e-value: 0.022
score: 23.9
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 258..325
score: 10.439801
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 104..142
score: 10.313101
NoneNo IPR availableGENE3D2.40.50.40coord: 96..151
e-value: 2.4E-8
score: 35.6
coord: 248..306
e-value: 5.7E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 1..136
coord: 179..290
NoneNo IPR availablePANTHERPTHR46148:SF38PROTEIN NYNRIN-LIKEcoord: 1..136
coord: 179..290
IPR023780Chromo domainPFAMPF00385Chromocoord: 259..297
e-value: 1.5E-7
score: 31.2
coord: 105..145
e-value: 5.4E-9
score: 35.8
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 222..297
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 68..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G08970.1CSPI07G08970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0046907 intracellular transport
biological_process GO:0042254 ribosome biogenesis
molecular_function GO:0003676 nucleic acid binding