CSPI07G05780 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G05780
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionextensin-like
LocationChr7: 4322762 .. 4323192 (-)
RNA-Seq ExpressionCSPI07G05780
SyntenyCSPI07G05780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACCAATCCCCTTCTCAATTACAATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGTTTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGGTGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

mRNA sequence

CAAAACCAATCCCCTTCTCAATTACAATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGTTTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGGTGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

Coding sequence (CDS)

ATGCCTCACTCTCTCCTTCTCAACGCCCTCTTAGCGGCAGCGCTGCTCTTCTCCGCCGCTGCCATATCCCCGTCCCCGTCCCCGTCGCCCACTCCTCCTGCCTCCCTTTCCCCTCCCTGGAGATGGGCTCCCATCACCAAGCCTCCTACCCAACCACCAACGCCGTCCCATGAAACCGAGCCCAGTACTCCACCGCCGTCGCCTACTTCAGTTCCGCCGCCGGCCCATCACGATGAGCCACCAACTGCACAACCAGTTTCCCCTTCTCCGTCTCCGACGTGGATTGCCGAACCGCCTTCGGAAGCACTGTCGCCGTCGAAAGCAAAGAGTGATGGGTTTAAGAACAGCTTCTCGGTGGTAGGATCGGTGGCTATTGGAGCAATGGCTGCTGCTGCTCTCCTTTGA

Protein sequence

MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETEPSTPPPSPTSVPPPAHHDEPPTAQPVSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSVVGSVAIGAMAAAALL*
Homology
BLAST of CSPI07G05780 vs. ExPASy TrEMBL
Match: A0A0A0K238 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0

Query: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60
           MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60

Query: 61  PSTPPPSPTSVPPPAHHDEPPTAQPVSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSVV 120
           PSTPPPSPTSVPPPAHHDEPPTAQP SPSPSPTWIAEPPSEALSPSKAKSDGFKNSFS+V
Sbjct: 61  PSTPPPSPTSVPPPAHHDEPPTAQPDSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSMV 120

Query: 121 GSVAIGAMAAAALL 135
           GSVAIGAMAAAALL
Sbjct: 121 GSVAIGAMAAAALL 134

BLAST of CSPI07G05780 vs. ExPASy TrEMBL
Match: A0A6J1CJN4 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 83/149 (55.70%), Postives = 99/149 (66.44%), Query Frame = 0

Query: 11  LAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQP----PTPSHE-TEPSTPP 70
           +AAALL SAAA +P P+PSP+P A+ SPPWRW P  KPPT P    P PS + T PS+P 
Sbjct: 1   MAAALLASAAA-APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPA 60

Query: 71  PSP---TSVPPPAHHDEPPTAQPVSP-----------------SPSPTWIAEPPSEALSP 130
           PSP   T+V PPA    PPTA PVSP                 +P+P+WIA PP++AL+P
Sbjct: 61  PSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAP 120

Query: 131 SKAKSDGFKNSFSVVGSVAIGAMAAAALL 135
           SK KS+  KN FS+VGSV IGAMAAAALL
Sbjct: 121 SKHKSNALKNRFSLVGSVGIGAMAAAALL 144

BLAST of CSPI07G05780 vs. NCBI nr
Match: XP_011659717.1 (vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_017249 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 2.3e-58
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0

Query: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60
           MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQPPTPSHETE 60

Query: 61  PSTPPPSPTSVPPPAHHDEPPTAQPVSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSVV 120
           PSTPPPSPTSVPPPAHHDEPPTAQP SPSPSPTWIAEPPSEALSPSKAKSDGFKNSFS+V
Sbjct: 61  PSTPPPSPTSVPPPAHHDEPPTAQPDSPSPSPTWIAEPPSEALSPSKAKSDGFKNSFSMV 120

Query: 121 GSVAIGAMAAAALL 135
           GSVAIGAMAAAALL
Sbjct: 121 GSVAIGAMAAAALL 134

BLAST of CSPI07G05780 vs. NCBI nr
Match: XP_038887113.1 (anther-specific proline-rich protein APG-like [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 8.5e-29
Identity = 100/153 (65.36%), Postives = 109/153 (71.24%), Query Frame = 0

Query: 1   MPHSLLLNALLAAALLFSAAAI-SPSPSPSP--TPPASLSPPWRWAPITKPPTQPPTPSH 60
           MPHS LLNALLAAALLFSAAA  +P+PSP+P  TPPAS SPPWRW PITKPP    TPSH
Sbjct: 1   MPHSALLNALLAAALLFSAAAAPAPAPSPAPLHTPPASPSPPWRWTPITKPPPS-STPSH 60

Query: 61  ETEPSTPP------PSPTSVPPPAHHDEPPTAQPV----------SPSPSPTWIAEPPSE 120
           E++P+ PP      PSPT V PP HH   PT +PV          SPSPSP+WIA PP E
Sbjct: 61  ESKPTPPPSSPPPTPSPTPVLPP-HHHHAPTERPVSLPLQKSPSPSPSPSPSWIAVPPPE 120

Query: 121 ALSPSKAKSDGFKNSFSVVGSVAIGAMAAAALL 135
           A +PSKAKSD F N FSVV SVAI AMAAA LL
Sbjct: 121 APAPSKAKSDAFNNRFSVVASVAIDAMAAALLL 151

BLAST of CSPI07G05780 vs. NCBI nr
Match: XP_022141995.1 (extensin-like [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 83/149 (55.70%), Postives = 99/149 (66.44%), Query Frame = 0

Query: 11  LAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQP----PTPSHE-TEPSTPP 70
           +AAALL SAAA +P P+PSP+P A+ SPPWRW P  KPPT P    P PS + T PS+P 
Sbjct: 1   MAAALLASAAA-APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPA 60

Query: 71  PSP---TSVPPPAHHDEPPTAQPVSP-----------------SPSPTWIAEPPSEALSP 130
           PSP   T+V PPA    PPTA PVSP                 +P+P+WIA PP++AL+P
Sbjct: 61  PSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAP 120

Query: 131 SKAKSDGFKNSFSVVGSVAIGAMAAAALL 135
           SK KS+  KN FS+VGSV IGAMAAAALL
Sbjct: 121 SKHKSNALKNRFSLVGSVGIGAMAAAALL 144

BLAST of CSPI07G05780 vs. NCBI nr
Match: KAG6576849.1 (hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-04
Identity = 65/178 (36.52%), Postives = 85/178 (47.75%), Query Frame = 0

Query: 6   LLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQP------------- 65
           +LN + AA LL SAAA SP PSP+P+P    SPPW+W P T+ P+ P             
Sbjct: 6   VLNVITAALLLISAAANSPLPSPAPSPE---SPPWKWTPDTESPSSPPEMEPPSPSVSPP 65

Query: 66  ---PTPSHETEPSTPP------------------------PSPTSVPPPAHHDEPPT--- 125
              P PS +T P++PP                        PS T  P PA     PT   
Sbjct: 66  ELSPVPSSDT-PTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKMSPTPAR 125

Query: 126 -----AQPVSPSPSPTWIAEPPSEALSPSKAKSD--GFKNSFSVVGSVAIGAMAAAAL 134
                A PVS  P+P    EPP+ +++P+  K+D  G  N F++ GSVA G MAAA +
Sbjct: 126 APKSSAPPVSSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAIRGSVAFGLMAAALI 179

BLAST of CSPI07G05780 vs. NCBI nr
Match: KAG7014869.1 (hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-04
Identity = 65/178 (36.52%), Postives = 85/178 (47.75%), Query Frame = 0

Query: 6   LLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQP------------- 65
           +LN + AA LL SAAA SP PSP+P+P    SPPW+W P T+ P+ P             
Sbjct: 6   VLNVITAALLLISAAANSPLPSPAPSPE---SPPWKWTPDTESPSSPPEMEPPSPSVSPP 65

Query: 66  ---PTPSHETEPSTPP------------------------PSPTSVPPPAHHDEPPT--- 125
              P PS +T P++PP                        PS T  P PA     PT   
Sbjct: 66  ELSPVPSSDT-PTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKMSPTPAR 125

Query: 126 -----AQPVSPSPSPTWIAEPPSEALSPSKAKSD--GFKNSFSVVGSVAIGAMAAAAL 134
                A PVS  P+P    EPP+ +++P+  K+D  G  N F++ GSVA G MAAA +
Sbjct: 126 APKSSAPPVSSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAIGGSVAFGLMAAALI 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K2381.1e-5898.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1[more]
A0A6J1CJN41.1e-1855.70extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_011659717.12.3e-5898.51vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical prot... [more]
XP_038887113.18.5e-2965.36anther-specific proline-rich protein APG-like [Benincasa hispida][more]
XP_022141995.12.3e-1855.70extensin-like [Momordica charantia][more]
KAG6576849.14.3e-0436.52hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014869.14.3e-0436.52hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 21..33
score: 46.15
coord: 77..93
score: 36.47
coord: 44..65
score: 52.73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G05780.1CSPI07G05780.1mRNA