CSPI07G05170 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G05170
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Location	Chr7: 3830975 .. 3843528 (-)
RNA-Seq Expression	CSPI07G05170
Synteny	CSPI07G05170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCTAATTACCACTCGGGACTGTGGCGCCCTTCACTCTACAATGCTCATCCGGAGGATTCATCGAGCCGCGGCATGGGCGACGCCTCTGTTGCGACATCCAACCGTAAGTCTTTCAACTCGTTTTTCTCTTCATTTATCTCCTCGAACCTTTGAATGCTTGAATTTCCGTAACTTCTTTTTGGTTTCAATGGTTGTTAGTTGTCTTCATATGTTTTTCCGTTTGCTAATTGGATTGGCAACAGGAAATTCTTAGTTTCTGCTTAAGTCCCTTGTATTATTGTTTTCTTTTTTTTTTTTAATGTTTTCAAAAAATGGATAATGAAAGGACCAAGGGGAAGAACTGGATACCTCTCTTACAACCCTGAACTTACATTTTTATTTGTTTATTTATTTTTTATCCGGGAATTTCTGGGTGGTTTTACTTGCACTTATAATCTGCTTGACTTTACAATATTTAAGTGTCAAGAAAACATGTAGGATATTATCTTAACAGATGGCCACAATGTTTGAAACTGAACTTATTGGGTTGTTCTGATCCTTCCCTAATAATGAGAATCTTGCGTTAGGATTTTTTGGATTACAGTCATCTATTATTGACATCCTCCGTTTTGCATTACTTGGGGAATAATTAACTGTGGCTAAAAGCTCCCACCATCATTGATTTCTTATTTGTCTATAGTAGAATTAATTTCCTGTTAATATATTAACCCATGATACATTTCACGGCCTTTTGGCTAAGAGCAAGTGTATAATATATTAACCTATGGTAGCTTGTTTTAGACTGCTTTTAAGGAATCTAAATTTTTCAATAAATGAGCTCACAGGTAGGGCAAACCATGGAGCTTGGAGTCAGCAGGCTGCAAGTTGGGTCCTCTTGTTACTGCACAACGATACAAGATCAAATGTGTCAACAGCTTGCTGATAAAGATAGAAAAGATAAGGTATCTGAGATAAATTATACAGTCCATGCTTAGAAAGTATGACATACTTTTGAAGTCTTTCGATGCCTCGGCAGAGTAAAATTAGTTTGGTTGATATTTTAAAGATTTGGCCTTCTTTCCCTTTTCGCATAACTGTTGTAGCTCTCACTATTAGTATTGCATTATTTGGTAGCAGAAATGATACTAAGGTTGATAAAATATTGTTTATCGAAGGGTTTGAAGAAAGAAGAGAGTTCTGTCATCTTTGTATTTGGGGAGGATAAAATAGCTCTAGGGACTTGTCAAGTTTCTTGTGTGTTTAAATTTTTCTTGTAGTTGTTAGTTTCTTCTCTTAATGTGTATTAATATTGAGACTTATAACATGTACTTTATATGTTACTTTTGTTTGTTTCTGTTTTTTCGGTCAAACATTACACAAATTGATATTCCTCGAGTACTTAAACAGAACAGTGAATATTGAAATTATTGTAAATTTATTTGTTGGTAAATTAGTTGACTGTTGAATTCTTTTTACCAATGATCCAGGATGTTAACAGTAGTAAAGCTTTGGGCCACATTTCAGAGCAAAATATTGGAGACATTAGAAAGCACCAAATTGGGAAAAACATTTCACGGAAAGACAAAATTCACTTTCTTGTAAATACGGCAAGTATAAACGGGAAAATATCTCCCATATCTCTCTCATTCTTCTCTCTCTCTCTGTTGGGGCAGGGGGGTTGGTTTTGAATTGAGTCTCACTCATTACATATGGGTATATTTTCATTTCATAGGAGGCTTTAAGAATTCTTTTGGAATAACTAATAGTCTAATTCTGAAAGGGGGAAAAAAACCCAAAGAACAGCATTTTAAGTGTTCAAATGCTAAAACTGTTTGCATCAATAAGAGTTGCATACTTCAAACACTAATTGGCAAGACTTCTTGTTTCCTGTTAAAAGTAATAGCGATTAGCCTTTCAAATCTCCTATTTCCTTCTGTCACAAACCTAACACTTGATTGGACAGATCGGTTGGGTTCAACACATCTTCTTGCCTCATCATGGTGTTTTCAATCAAAAGCTTTTTGTGGTTATTCTGTTCAGAACAGTTGTCTGAAGTTTGAACTTGAATGCTTTCTTTAATTCAATTTAATGTATGTCTTTATGCCTTGTAGTTCCTGGTATGTAGTATTTTGGAGCACTAGACTCTTTCATTATGCTGATGGAAAGTATTGTAAATCATTTCTGTTAAAAAAAACCCCTATTTCTTTCTGCCATCACTATATGTTAGTGATATATAATTAAATTTTCCTTCAACCACCAACTTAAACATTTGGTTGAATTGGTGATTTAAGATGGCATCAAAGAAGCTGGTCCAGGAAGGTCTTGTGTTTAAGCCCCTGTATTGTTGTTTTCTCCCCAATTAAAATTAATTTTCACTTGTTGGGTCTTTCAAATATTTCAAGCTCATAAGTGAGGGGGAGTGTTAGTGATATATAATTAAATTTGCCTTCAACCATCAACTTAAACTTTTGGTTGAATTGGTGATTTAGGACTATATTATTTACTTCATTACATCTTTTTGCTTCTTATTTACACTGGGTTAGAATGGATCAGGAAATGGTCAACAAGCTATGGTTGTGTCTAGATTGTTTGCTCCTAACAATTGGAAGTAGATTAAAGGTGGTTAGGTAGATCAATTTACCATCTCTATTCCGTTTAATCTTTCCATGGTGGATAGGCTTTATGCAAACTTGATGATGGTAAGATTAGTGGGTGGGAAGCAGACCTTTGGTCGATGTTCCCTCGTCTCTTTCCATCTTTTGTCCTTTAAAAATCATGTGGTGTTTGGTAGAGAAGATCCTTTTCCTTTTCATTTGGTCTCCATCGCTCTTCGTTCAATAGGTAAGGGATGGATGTCGCTTTGGTCTTTCTTTATGGGATTGTTTTTAAACCGGGGAGAAAGGATTTTAGGGTGTAGAATCCTAATCTTTCAAAGGAATTTGCGTGCACCTCCTTTTTTCGTATGCAAAGTGCCCTCCCTTAGGCGAATTGAATTTTCTAGCTTTTTTGGAGGATTAAGATTCCTAGGAATTCTAAGTTCAATTGGCGAGTTCTACATGAAAAAGTTAACACTTTCTTTCTTTTTCTCTTTTTTTTGTTAAGAAACAGAGGAATATATACATATATTAACAAGAAGAAAACAGTCAAAGGGCGAGGGGTTGAGGGATCCCCCTCTCAATAAAAAAACTAAACAATAAGAGCCTTCCAATTGTTAATAAATCATGAGAAGGTTGTAGTTGCAAAATAACTTTGTGTAGTTTGTACACCACCAAGAGGTTGCATGCTGCATAAGAGCCCCTGAAAGAACCAAAAGAACTAAACTTATCCTCAAACACTCTAATATTTCTTTCATTCCAAAGATGCTACAAAAGCGTGTAGGTTGCACAACTTCAAAAAATTCTTCCTTTTCCACAAAAGCTGCCCCCATTCAAACCCTCCATCATTCGATCATCAATCCACAAGGGGAGACATCCATCCATCCACTAGTGTCCCTATGACGAACATAAAAGACACCAAACGTGTAGAAGAAGAATTTGCAAACTCATATCGCCAAAGCAAATGATCCAAAATTTCCTTTGCCTTTCGAGAAAGAATACAACATAAAGGACCAATATCTGGACGCACCTAGACATCTTAGCTAGGTTGACAGTTCCTCAAGAGGGGCGAATAAAGGCATTGAATGTGTCAGCCTTCAAAGAATATACTTTTAGGCAGACAAATAGTGCCGAGTACATCACTAAATTGCTCAAAGTAATGCACCTGTTATGGATGTAGCGATAATTCAACCAAATAATTAGTAGACCAAGAGGGGAATCACCTGATTGTTCTTCATGTCTTTTACCCAAAAAAAAGAGAATATTGTATTTTCAGACCAAATACAAAAATACCTTTTACAGACACAACTCCTTGTCTAGCAATAAAACATAGATGAAGAAGTAAATGGAATCACTAAAATCTGACACAAAAACTGTGGCTGAAGGCTAAGAATGAAGGGATGGATATGGGATGAGAGGAGAGAGAAGAGAGCATTTCCTTACCCCTTGCTCTCATTCCAGTTGCTTTGATGCAGTCTTATGCTAAATTGCATTTTACAGGGAAGATGATTTGTGCATGAACAGCATGATACAAGTTCAATATTTTCTTTACGAAAAGTATATTATATACTTTGCACATACCAGGACTTCCTTTTATTCGATGCTCTTGTTTCTTATGTATATTTTTATGGTCAATATCAAACTTTTATTTATTTTTATGTAATTGTACGAACTTGGAGGTTTATGAGTCTCTAAATATTGCAGCTGCTTGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGACGCCTGGGTTGCATGGGAGCAAGACTTTCCAATAGCACCCCTTAAGCATGTATTGGCTGCCCTTGAGAAGGAACAACAGTGGCATAGAATTGTACAGGTACGAGTTGTACCAGCTATCCTTTATCTACTCTCTTTGCCCTTTACCGACTCTTCCCATTCTTTTTCTGAAACTGAAGAAAAAAAACTCTTCATTGAAATAGATATGAAATGCAATGTAAGGAACCATCAAATGATGATGCAATGACATAAATAGACCAATGGTATTTGTAAAACCAACAAACATAGTTAAGAGGAGATAAGTGCCTTCCAATTTAAACTAAAATTTTAAATAGAGTATTCAGCAAATAATTTGGATAGAGAACACCATGAAGAAGGTTTGACTCAAACAATTTCATAACGGTCAAACCAAGGGAGAGATCTATTTTGAAAAATATGCTGGTTCCTTTCAAACGGAATTTTTAAGAGAATCGTTTTGACTCTGTTCACCTATGAAAGGCAAGGGATAGCTTTTAACGAAGGCCCCACTAGAAGCTGAATTACATTCTCCTTGGAAACAGTGCTCTACACCACACCTGATGCAGATTAAACATAGCAGAATTTTTTGGAGAAGCTACAATAAAAAATATGTGCCGGGAGTCTTCCACACTTTCCATACCCAGCAGGCAGATTGAGGGCATTAACGAATGGCTTGGGAGCTATCTTTGAAGACACTTAGAGCAATTAACAGCTCCATAAATCGTTACACAAGTTATGATGTTAACTCTTCAAGAACAGTTTGATTTCCACACAGCTTTGTACAGCTTTGAATCCATGAGAGAAGAGGCCACCAAATGCCTGGATAAAGATTTAACCGAAAACTGAGTTGAAACTTCCAACTTCGTCTTTTAACCACTTTTTGACCCTCTAATGCAACCAATAAATTCTAGAAATCCAGCAGCTCTTAATTCTTCAGAATTTTTTTTGAACATTTTGGGTTCTGCCTCAGTCCACCAGTAAGGAGCACCAATCGCAACCCTTAGATTGTATGCTATTAAATTATCCACAACGTGTACATTTTTAATTCCAAGTTATAATTAATAATTCTGAAGATTAATCATTGTTTCCTAGGTAAGTTCTCTCTCCTTTCTCCTTTCTCCTCTCTCTCCTCTCTCTCCTCCTGTCCTCTACCTGCTCCGACACTTTCAGATATCAGTTTTCTGGCAAGTAAGTTAGAAATGGAGGTGGAAAGATGCAGAGTTCTGGACTCTCCCTATTGTATTTGGTCAGAGAAGGAGTTATTCCAAGTTGAAGATGTGGAAGCAAAAAAACCCTGCCTTTATCAAGGTCCCAACTCTGCTGGTTCCAAGTGCCTATCGATATGTTAACATCAGAAAAGAAGTACTACTAGAAAGAAAGAATAAAAAATGGCATAACAGAAGTCTCAAAATTCAGAGTGGAGAAAGGTTGGGTTTTAAGATGCAGCTTTTGGACTAGAACAGGAGGAAGATCTTTCATACATATCCTATCGGGCAAGGGAAAACAGAGATGGCAAGCGTTTCTGGAAATGATGAAAAGCTTCAAATCCAAGCATATGATTATACGACATGGTTTTCAGTCCAGAACAAGCTGAAAAGCAGTCAATCTAAAGGTTTTGGCTTATCACAAGAAGAGAAGGATAGTTATGCGGACAAAATTAAGCAGAATAAGACTTTGTTTTGGAACTGGAAAAACAGAGCAGTCACCAACATTGGATTATCAAGAATCCAAAGGTCTTCGGAACAAATTTCAACAATCTTTGAGTTGTCACACGTCTATTTGAGTTCAATAGCTGGGTTGAGATAAAAGAAACTTTACAAACTACCTTCAAACTGGAGATTATCATCAACCCGTTGTTTGCAGAGAATGCTCTAATTGATATTGATCAAAGATCATTGGATGAAGTGATAGAGCAACCTGGGAAATGGCAGGATTTTGGTGCCTTTCACTTAAAATTTGAAAAATGGGATAAGATATTACATAGCATACCATTGTATGCAAGAGGATATGGTGGATTGATCTCGATTAAGAACTTAACTCTAGACTACTGGAATAACAAACTTTTGAAACTGGGCCTACTTTAGGGGCTTATTAGATACATCCATGGAAACTTTGAATTTTGTAAATGTTTCAAAAGCTAAAATTCAAGTTAAAGAGAATCTTTGTGTGTTCATTCCGGCAACATTTGAAATCAATGATGAGAAAAGAGGTAATATTTTCTTGAACTTGGTGATATTTCATCAGTCAATCCACCCAGTAAAGTCAGAGGAGACTTATTTGTCTATGATTTTTCAAATCCGGTGGATGCTGTTAGATTAAATCCAGTTTTGAAGGATGAAGGGGTTGAATGTGATTCGCTAAATGATCAAATTGAGTTTCTTCTACAGGCAAGGATGCGTGCACAATACTCTAGAAATTCATTTATCCGGTCATAAAAATTCAACCAGTTGAAACTTTAGAAGCCAGAATTTGTTTCATTGGAGCCGGAGAAGGTGGTTGTTCATGGGGTAAATCTAAAGGTCACTGTGAACTCTTTGTTGGAATTTGTAAAGGTGCAATCAAAGAAGAGAGAAAGTTCTTATGGGCTCTTCAGTTTTCTTAAACGGGGAAAGCCAATCAACGACTTGCAATCCAAAGGTAGTACTGGATTCTTTGGTGCACCCGCCTGAAATTTAGGAAGTCAATCAGTAGTTTGATCGACAATCTCTTCATTTTTTGGAGGGAATATTGAAGCGGAAGTCGAAGGGGTGCTTTTAAAATGGTAGTTTGAGTTTCTTCTACTGGCAAGAACTATGTTAACATCAAAAAAGAAGTACTGTCCACCGAGAACCCAAGAGACACTCAATCTCCTATTTCCTCTTATTTAGTCCATTTGGCTAAATGTCATAATTTTTCCGCTTCTTGTTCTGCCGTTAGAAGGTCTCTCTCTCTTGCTTCTTCAGCATCGGGATCCTCTTCTGCAAAGGTTGGGTTAGTGCCAATCTCAGCTCCGTCTAAAAGAGCCTCAGGCTTCTTCTCTTCATGTGTGCATTTATCTTCTTCATCCCATGCGTCTTCGGCCATTCTAGTCTAAGAGGTTTTTCTAGAAAGCATACAAAATCAAAGAAACCCTCACTTCCCTTTAAGACGTTACCCAAGCATTTTTTTAGAAGAAGGAGGCCGAAGGATCTCTTAAGAAAGGCTCTCGTAAAGACAAAGATGTTGTCAGACCAAAATCTTTAAACTTCTGAAATTTTAAAGGTAAAAGACACTAAAGGCCAAGCTGCTTCATCTTCAATAAGGTTAGACATCCAGAGTTAAAAAAAGATTGGCTTAGGTAGAATGGAACTTAGATCCTGATTCTTTAGAGGTTAATTACACATAGATTCAAGTTTCTTCTCTTTCAACCAGATCAGACCATCAGAGATCTTGCCAACCACATTTTAAATATTCTGTTTTTTCCTTACCTTCCTCAAAAGTAAAAGTTTTGAGAGGCTCCCTTTGCCAAACTCCAGGCCCTCTATCCAAAAAGAACTGTGATTCAAATTTTGACTCAAATTTGGGGAAGCTAAATGAGTTAGAGGATCAAGCTTTGAAGGAGCCTTTAGAAATTGATCTCAATGGTTTGTTTAAGAATGAAGAGGAATTGAATGATGGAAAACAGACCGCTGGAAACCCCTCTCAATCTAAGCATTGCGAAATTCCAACTCATTTAAAGTCGATAGTAGAAAAATGTAAACTAGTTTTTATTTGAAATCTGATTTTAGTCACTTTTTGTTTCAATAATCGGGTTCTTTGTGAGGTTTGAAGGCTGCAGATAAAGAGTTTGGGATTCAAGTCTATTGAGCATTTAATTTAGAACTAGTTCTTCCCTTAGATTCGTTGAAGAAGTAGGGCTCAAGAATTGCTTCCAACAGATTGAACAGTTAATATTTCTAGCAGTTCCTGGTTTTCGTCTTAGTGAAGATTCAGCAAGGATGGTTGTTGTTCTCTTGGCTTTCCCTCTTCACTCATCTCGAAGCTTATTGTGGGTGTTGTAATTTAGTTTTCGACATTTTTGTTGAGTTGGTTTATCGTTTCATCTTTTCTCATCGGGTGCAAGAATGACTTCCTCTGTCATAGAAATTAATGTTACTTTGTAGTTTGTTGCTTTGAAAATTGTTAGCAAGTCTTCTCGGGCTCAAGATTGTTTTTGTCTCCCATTGGTGTTCCATCTACATTCTTTTTGAAGCTATTAGTGTGCAATTCTTTCATCGAAATTGGCTTCTTTTTGAAAGAGCACTATTTTGCTTGGTTATTCTTTCTCCTTTTTGGTTTGAGTTATAGAGGATTTTGGCTTGTTTGTACCATTATTTTGATTGTCCTTTTAGTCATTTTTCTCCTATCTATTGCTCACAGTATATTACTTTTGTACTTTAAGCATTAGGCTAATTTATTGTCACTAATAAAGAGACTTGTTTCTGTTTCAAAAGGAAAAAAGAATAATTGTGTAATGTAGATTAGTTAAAGACTTCTACTTGTTTAGATTAATTCACATAAATTGAAGAGTACTATGTGTATTGGGTAATACTCTGGCCTCATAATATTATAGATATTTTGAGTTAAGCTGTGGAAATGTCAACTTCTAAAATATTTTTTTAAAACTTGTCGTCATTGAATTTGGACAAAATATTGGGTAATTCTATAGGTCATGAACATGATAGAAATGGATGCTGTTAGATTCATGTGAATGTCTTCTAGGTAATCAAATGGATGCTAAGCAAGGGCCAGGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGGGGAAGAAGCACACAAATTTTGGGTCATGAAGATTGGTTCGGATCTTCATTCAGTTCCCTGGCAAGTGTGCAGAAGCATGATGGCAATATACTACCGAAATAAAAGGCTAGAAGACCTTGTAAAGGTATAATTCTCATTTTTAGTTTTATTCAGTCTATTGCAGTGCCAGTGCCTTCTGGAAATGACTTTATGCTTGGGATATTGTTTTTATTATTTATTTATTTTTCACTTTCCCATTAAACTATTTGGGATAGGAAATAAATTTTTTCTCCCATTTTAAAAACAAAAAAATTAAATGTTTCCATTAATGGAGAAAAACATTTTTTTTTATAAAGGAAACAAGCCTTTTCATTGATAGAATGAAAAGAGAATAACATTCAAATTACAACGAAACGAAATAAAACAAACTATACCAATTTCAAATATTTCAGCCAAAGACAACCAACATTATCTTCCTAATACTTAAAACTTCCTTGTAATGGACCTAGTTCTAGTCCAGTGGCGAATTCTCAATCTTTCCAAGCGTGTAATTATGCTGCCATTCAAATTTGGTCCCCATCCTTTTGAGTGGTTGTCTAGAGAATGTTGTTGGTGATATATAATTAAATTTGCCTTCAACCACAAGTTTAAGCTTTTGGGTGAATTGGTAATTTAATAAATGTAAAGGCATGCACCGGAACTTTTGGAAAGAAATTTCAAAAGAGCTTCCTAAATCTTCTCCTTGGGTCCGATGTGTGGTGGGGGATGGGAAAACTACTTATTTTTGGGTTGGGGATAAACCTTTTTGTGCCTCCTTTCCCACTTTGTATCATTTCTCTTACCTCAAATATCAGGTAATGTCTGACTCCTCCTCAGTATGGTCATATCACATAATGTCTGACTTCTTAGTATGGTTGGGGAATTCATATTCTTTGCACTTCGTTTTTAATCGACACCTTACTGATGGGGAAAGGATGGAAGTGGTTACCACTTACACTCCTTTCCTTATTGGAGGATCACCACTTTCGACAAGGTAGAAGGGATGTTAGAATATGGAGCCCCAATCCCATGAAGGACTATTCTTGCAAATCTTTCTTACAAACCTTGCAGGATTAAGATTTCTAGAAAGTTGAGATTCTTTTCTTGGCATAACTCGCTAAGGTTATTAATATAATTAGATTATTCTTAGGTGATATTATTCTGGAGATATTATTTGATATTATTTCCTTAAGTGTATTTCTCTATGGTTATATATAGGCTTGTATCTCTACTAAATAATGAATGAAATATAGATTTATTCCATAAAATCAACAATGCCCTCGTTAGTTTGGCTCTTTTTGCTGTGTTCTCTTTTACAAGTCAGCGGAAGGCTTGGACCATATCCCTTGGAATTGTGATTATGCGAGTACTGTATGGGGTTACTTTGCTCGACATTTGGTAGGGATACTGCTCACCTCAGAGCAGTAGGTATGATTGAGGAATACCTCCTCAATTTGCTCGTTGGGGACAAAGGCAAATTTCTTTGGAGTGCTATTGTCTGTGCAATCTTGTGGTTTTTATGGGGTGAACAGAATATAGGACTTTTAGAGGTGTGGAGAGGGACTCTAAAGACCTTTGGTCTCTCGTTCATTATCACGTTTCGCTTTGGGCTTTGTTGTCAAAAACGTTTTGTAATTGTTCTTTGGATCTTACTAACCTTAGCTGGGATCCTTTTTTGTAATGCGACTTTCTCGGGGCTTGGCTATTGCCACTCTTGTAAATTCTTCATTATCTCTCAATGGAAGTGTTTTTATTAGTAAAAAAAAACTGATTAGTAAGGAATAATTGAAAAGACAAGATTAACAGGCCAAGCTCTATAGAATTGATTCACTTTAATTGATCATTGTATTATGCTAATCTACTACTCCTCGATATTCTCTTAGTTATAAACCAACAGATTTTATAACTCTTTTTATTTTGAATCCTTGACTAAAGTATACTCCTAAACTTGATTTTGATCTGTACTGATCGGACGTAGGTTCATAGTGTGTCAAGTTTATGATTCTTTTTACTAGGTTCATGTTTTGTGGGCCTTCACAAACATTTCAAACCCTAGCTTTGTTCTTAAGATCTGAACTAGTTCAATTTCTCAAGTGATGAATGGTAAATGATTATCATATATTCCTATGGCCAGCGGGGTAAAAGATCAAGAACGGCACAATGTAAATAAAATATGGAAATAAACAAAGGAGCATTAATCTCATACAAGCACAACAACCTAACAGTGGCTGCATGGCTCCTATGGTTGAAGAGACATTTTGATCTCTTTTAATTATTTTTAGGTTTCCTTGCCCTCTTGCAAAGCGAACTTGATTTTACTAGGTTTTGAATATACAAGAAAGAGCACCAAATTTTTTTTTTAGGAATGATCCATTTGATATGGACCAGGGGTTCAGTTATCTGTTGACCTTGTCTTAGTTGCCAAAATAAAGCTTGAGGTTATCCATTGAAACTCCATGTTCTTATGCTTCTTTGATAGTTCCCACTTGAAGAAAGGAGAAACGATGGTCATTTGGAATCCAGTCGTTTTGCAATGTTAAGGGAGGACTATCACTCCAACAGCGCATCAAACAGAAGAAAAACAGGAAAAACTCTCTTGTTTCCTATGAATTAGAGCTCCAAATGCAATTTACTTTACAACTTCGTATTAAATCAAATTCCCTTGCAGATAGGTATATTGTTATTGAACTCCATATTGGTAGAACCTTCACTTAGTCCGGCGGTCATCCCTCCCAAACTGAAATAAATGCCCCAAACAAGAAGAGAAATTCCCGTTTGTCTTAGAGGTAGGAAGGGTCAATTAGAAAAGAGTGTTCGATAACCACTACACTTCACAATGACTGACTTACAGAATGGTATATATTGGTGCAAAATGGTTGATGTATTGATGAGTTTTATCTGATTGCATTACCCTCTATTCTCTGTTAATCTAAACTTGTCTTCTTCAATCAAAAGCTTTTTAAGGATCTCGAAGCCTTCGGACGTAAACCCCCAGACAAATCAATAGTTCAGAGGGTTGCAGATGCTTGTGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTAAAGTACAAATATCTTTTTGATGAGAAGGAAGGACCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAATCAACAAAGGGCACTGAAGACAATAGCAACCTTGTGAAGTCTGAATGAACGAAAGAAACAGGTAAAAATATAAAAGAAATTATGTGTTAGTTAACTTGTTCATTTGTCTCGGCAACCCAGATTATTGTGTTGACGTCTTGTGGGTATAGATATTTTGCTTATCCATATTAATTCAAAAGTATTTGTAGTAAATGATAAAATTAGCTAATTTCGGGCATACCAAGTTGG

mRNA sequence

TGCCTAATTACCACTCGGGACTGTGGCGCCCTTCACTCTACAATGCTCATCCGGAGGATTCATCGAGCCGCGGCATGGGCGACGCCTCTGTTGCGACATCCAACCGTAGGGCAAACCATGGAGCTTGGAGTCAGCAGGCTGCAAGTTGGGTCCTCTTGTTACTGCACAACGATACAAGATCAAATGTGTCAACAGCTTGCTGATAAAGATAGAAAAGATAAGGATGTTAACAGTAGTAAAGCTTTGGGCCACATTTCAGAGCAAAATATTGGAGACATTAGAAAGCACCAAATTGGGAAAAACATTTCACGGAAAGACAAAATTCACTTTCTTGTAAATACGCTGCTTGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGACGCCTGGGTTGCATGGGAGCAAGACTTTCCAATAGCACCCCTTAAGCATGTATTGGCTGCCCTTGAGAAGGAACAACAGTGGCATAGAATTGTACAGGTAATCAAATGGATGCTAAGCAAGGGCCAGGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGGGGAAGAAGCACACAAATTTTGGGTCATGAAGATTGGTTCGGATCTTCATTCAGTTCCCTGGCAAGTGTGCAGAAGCATGATGGCAATATACTACCGAAATAAAAGGCTAGAAGACCTTGTAAAGCTTTTTAAGGATCTCGAAGCCTTCGGACGTAAACCCCCAGACAAATCAATAGTTCAGAGGGTTGCAGATGCTTGTGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTAAAGTACAAATATCTTTTTGATGAGAAGGAAGGACCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAATCAACAAAGGGCACTGAAGACAATAGCAACCTTGTGAAGTCTGAATGAACGAAAGAAACAGGTAAAAATATAAAAGAAATTATGTGTTAGTTAACTTGTTCATTTGTCTCGGCAACCCAGATTATTGTGTTGACGTCTTGTGGGTATAGATATTTTGCTTATCCATATTAATTCAAAAGTATTTGTAGTAAATGATAAAATTAGCTAATTTCGGGCATACCAAGTTGG

Coding sequence (CDS)

ATGCTCATCCGGAGGATTCATCGAGCCGCGGCATGGGCGACGCCTCTGTTGCGACATCCAACCGTAGGGCAAACCATGGAGCTTGGAGTCAGCAGGCTGCAAGTTGGGTCCTCTTGTTACTGCACAACGATACAAGATCAAATGTGTCAACAGCTTGCTGATAAAGATAGAAAAGATAAGGATGTTAACAGTAGTAAAGCTTTGGGCCACATTTCAGAGCAAAATATTGGAGACATTAGAAAGCACCAAATTGGGAAAAACATTTCACGGAAAGACAAAATTCACTTTCTTGTAAATACGCTGCTTGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGACGCCTGGGTTGCATGGGAGCAAGACTTTCCAATAGCACCCCTTAAGCATGTATTGGCTGCCCTTGAGAAGGAACAACAGTGGCATAGAATTGTACAGGTAATCAAATGGATGCTAAGCAAGGGCCAGGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGGGGAAGAAGCACACAAATTTTGGGTCATGAAGATTGGTTCGGATCTTCATTCAGTTCCCTGGCAAGTGTGCAGAAGCATGATGGCAATATACTACCGAAATAAAAGGCTAGAAGACCTTGTAAAGCTTTTTAAGGATCTCGAAGCCTTCGGACGTAAACCCCCAGACAAATCAATAGTTCAGAGGGTTGCAGATGCTTGTGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTAAAGTACAAATATCTTTTTGATGAGAAGGAAGGACCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAATCAACAAAGGGCACTGAAGACAATAGCAACCTTGTGAAGTCTGAATGA

Protein sequence

MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDKDVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVAWEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEEAHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRVADACEMLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE*

Homology

[Close]

BLAST of CSPI07G05170 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 5.6e-31
Identity = 81/219 (36.99%), Postives = 121/219 (55.25%), Query Frame = 0


Query: 69  GHISEQNIGDIRK-----HQIGK---NISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 128
           G+++  N  +I+K     H + K   +     K   LV  L  L + KEAVYGAL+ WVA
Sbjct: 65  GYVATVNSKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVA 124

Query: 129 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 188
           WE +FPI      L  L K  QWHR++Q+ KWMLSKGQG TM  Y  L+ A DMD R +E
Sbjct: 125 WEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADE 184

Query: 189 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 248
           A   W M + +   S+P ++   M+A+Y  +   + ++++F D+E   +  PD+   +RV
Sbjct: 185 AESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEEL-KVSPDEDSARRV 244

Query: 249 ADACEMLGLLEEKE----RVLVKYKYL-FDEKEGPMKKY 275
           A A   L   E ++    R L +YKY+ F+ +   +K+Y
Sbjct: 245 ARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 282

[Close]

BLAST of CSPI07G05170 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.5e-28
Identity = 66/175 (37.71%), Postives = 100/175 (57.14%), Query Frame = 0


Query: 86  KNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVAWEQDFPIAPLKHVLAALEKEQQWHR 145
           K I    K   ++  +  L + KE VYGALD+++AWE +FP+  +K  L  LE E++W +
Sbjct: 50  KRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKK 109

Query: 146 IVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEEAHKFWVMKIGSDLHSVPWQVCRSMM 205
           I+QV KWMLSKGQG TM  Y  L+ AL  D+R +EA + W       L   P +    M+
Sbjct: 110 IIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMI 169

Query: 206 AIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRVADACEMLGLLEEKERVLVKY 261
           +IYY+    + L ++F D+E  G K P+ +IV  V      L + ++ E+++ KY
Sbjct: 170 SIYYKRDMHQKLFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY 223

[Close]

BLAST of CSPI07G05170 vs. ExPASy TrEMBL
Match: A0A1S3C174 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495459 PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 7.1e-154
Identity = 276/302 (91.39%), Postives = 290/302 (96.03%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           MLIRR +RAAAWATPLLRHPTVG+TMELGVSRLQVG S YCT IQDQM +QLADKDRK+K
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DV++SKALGHISEQNIGDIRKH+IG+N+SRKDKI FLVNTLLDLRDSKEAVYGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQDFPIA LKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSM+AIYYRNK LEDLVKLFKDLEAFGRKPPDKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVK 300
           ADACEMLGLLEEKERVLVKYKYLFDEK+  MKKYKR+SFEK KRKRKSTKG+EDNSNLVK
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKQESMKKYKRVSFEKPKRKRKSTKGSEDNSNLVK 300

Query: 301 SE 303
           SE
Sbjct: 301 SE 302

[Close]

BLAST of CSPI07G05170 vs. ExPASy TrEMBL
Match: A0A6J1HUZ4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467059 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.1e-134
Identity = 243/301 (80.73%), Postives = 268/301 (89.04%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++ ADKD  DK
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI+FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300
           ADACEMLGL+EEKERVLVKY YLF DEK+G +KKY        K KRKSTKG +DNS+L+
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 293

[Close]

BLAST of CSPI07G05170 vs. ExPASy TrEMBL
Match: A0A6J1HGC4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463832 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 3.1e-133
Identity = 241/301 (80.07%), Postives = 266/301 (88.37%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++  DKD  DK
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVKLFK+LEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300
           ADACEMLGL+EEKERVLVKY YLF DEK+G +KKY        K KRKSTKG +DNS+L+
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 293

[Close]

BLAST of CSPI07G05170 vs. ExPASy TrEMBL
Match: A0A6J1DNN5 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.4e-130
Identity = 237/303 (78.22%), Postives = 269/303 (88.78%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           ML+RR HRA  W TPLLR  T GQ M+LGVSRLQVG+SCYCT +Q QMCQQLAD+D K+K
Sbjct: 1   MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVN+SKAL   SEQN GD+RKHQIG+N+SRKDKI+FLV TL+DLR SKEAVYGALDAWVA
Sbjct: 61  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQ+FPIA LK VLA LEKEQQWHR+VQVIKWMLSKGQGTTM VYGQLIRALDMDHR EE
Sbjct: 121 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           +HKFWVMKIG+DLHSVPWQ+CRSM++IYYRNK L++LVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300
           ADA EMLGL EEKERVL KYK LF DE++GP++KY +ISFEKSKR+RK TK ++DN +L 
Sbjct: 241 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGDLR 300

Query: 301 KSE 303
           K +
Sbjct: 301 KPQ 303

[Close]

BLAST of CSPI07G05170 vs. ExPASy TrEMBL
Match: A0A6J1DM10 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.4e-130
Identity = 237/303 (78.22%), Postives = 269/303 (88.78%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           ML+RR HRA  W TPLLR  T GQ M+LGVSRLQVG+SCYCT +Q QMCQQLAD+D K+K
Sbjct: 25  MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 84

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVN+SKAL   SEQN GD+RKHQIG+N+SRKDKI+FLV TL+DLR SKEAVYGALDAWVA
Sbjct: 85  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 144

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQ+FPIA LK VLA LEKEQQWHR+VQVIKWMLSKGQGTTM VYGQLIRALDMDHR EE
Sbjct: 145 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 204

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           +HKFWVMKIG+DLHSVPWQ+CRSM++IYYRNK L++LVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 205 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 264

Query: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300
           ADA EMLGL EEKERVL KYK LF DE++GP++KY +ISFEKSKR+RK TK ++DN +L 
Sbjct: 265 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGDLR 324

Query: 301 KSE 303
           K +
Sbjct: 325 KPQ 327

[Close]

BLAST of CSPI07G05170 vs. NCBI nr
Match: XP_004136857.2 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis sativus] >KAE8645790.1 hypothetical protein Csa_017311 [Cucumis sativus])

HSP 1 Score: 606.3 bits (1562), Expect = 1.5e-169
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK
Sbjct: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA
Sbjct: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE
Sbjct: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVK 300
           ADACEMLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVK
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVK 300

Query: 301 SE 303
           SE
Sbjct: 301 SE 302

[Close]

BLAST of CSPI07G05170 vs. NCBI nr
Match: XP_008455250.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis melo])

HSP 1 Score: 553.1 bits (1424), Expect = 1.5e-153
Identity = 276/302 (91.39%), Postives = 290/302 (96.03%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           MLIRR +RAAAWATPLLRHPTVG+TMELGVSRLQVG S YCT IQDQM +QLADKDRK+K
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DV++SKALGHISEQNIGDIRKH+IG+N+SRKDKI FLVNTLLDLRDSKEAVYGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQDFPIA LKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSM+AIYYRNK LEDLVKLFKDLEAFGRKPPDKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVK 300
           ADACEMLGLLEEKERVLVKYKYLFDEK+  MKKYKR+SFEK KRKRKSTKG+EDNSNLVK
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKQESMKKYKRVSFEKPKRKRKSTKGSEDNSNLVK 300

Query: 301 SE 303
           SE
Sbjct: 301 SE 302

[Close]

BLAST of CSPI07G05170 vs. NCBI nr
Match: XP_038887984.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 523.5 bits (1347), Expect = 1.2e-144
Identity = 261/303 (86.14%), Postives = 279/303 (92.08%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           ML+RR HRA AWATPLLR  TVGQ MELGVSRLQVGS CYCT IQDQM +QLA KD K+K
Sbjct: 1   MLVRRFHRATAWATPLLRDLTVGQIMELGVSRLQVGSFCYCTMIQDQMSKQLAVKDIKNK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           D N+SKALG  SEQNIGD+RKHQIGKN+ RKDKI+FLVNTLLDLRDSKEAVYGALDAWVA
Sbjct: 61  DFNNSKALGQTSEQNIGDVRKHQIGKNVPRKDKINFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQDFPI  LKHVL  LEKEQQWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIGSLKHVLTVLEKEQQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSM+AIYYRNK LEDLVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300
           ADACE+LGLLEEKERVL+KYKYLF DEKEG +KKYKR+SFEKSK KRKSTK TEDNSNL+
Sbjct: 241 ADACEILGLLEEKERVLMKYKYLFTDEKEGSIKKYKRVSFEKSKGKRKSTKSTEDNSNLM 300

Query: 301 KSE 303
           K++
Sbjct: 301 KAQ 303

[Close]

BLAST of CSPI07G05170 vs. NCBI nr
Match: XP_022967610.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 488.4 bits (1256), Expect = 4.4e-134
Identity = 243/301 (80.73%), Postives = 268/301 (89.04%), Query Frame = 0


Query: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
           MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++ ADKD  DK
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
           DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI+FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
           WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300
           ADACEMLGL+EEKERVLVKY YLF DEK+G +KKY        K KRKSTKG +DNS+L+
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 293

[Close]

BLAST of CSPI07G05170 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 486.9 bits (1252), Expect = 1.3e-133
Identity = 243/301 (80.73%), Postives = 266/301 (88.37%), Query Frame = 0


Query: 1    MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60
            MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++ ADKD  DK
Sbjct: 1376 MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFADKDMTDK 1435

Query: 61   DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120
            DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 1436 DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 1495

Query: 121  WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180
            WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 1496 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 1555

Query: 181  AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240
            AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 1556 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 1615

Query: 241  ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300
            ADACEMLGL+EEKERVLVKY YLF DEK+G +KKY        K KRKSTKG +DNS L+
Sbjct: 1616 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSYLM 1668

[Close]

BLAST of CSPI07G05170 vs. TAIR 10
Match: AT1G04590.1 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-76
Identity = 151/270 (55.93%), Postives = 185/270 (68.52%), Query Frame = 0


Query: 33  LQVGSSCYCTTIQDQMCQQLADKDRKDKDVNSSKALGHISEQNIGDIRKHQIGKNISRKD 92
           L+V S  Y          +   K+  ++D + S   G     N  + RKHQIG+NI +KD
Sbjct: 90  LRVQSMSYQFVADSHSSPKRIVKNEDEEDFSDSSKKG-----NAENPRKHQIGENIPKKD 149

Query: 93  KIHFLVNTLLDLRDSKEAVYGALDAWVAWEQDFPIAPLKHVLAALEKEQQWHRIVQVIKW 152
           KI FLVNTLLD+ D+KEAVYGALDAWVAWE++FPIA LK V+A+LEKE QWHR+VQVIKW
Sbjct: 150 KIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKW 209

Query: 153 MLSKGQGTTMNVYGQLIRALDMDHRGEEAHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNK 212
           +LSKGQG TM  YGQLIRALDMD R EEAH  W  K+G+DLHSVPWQ+C  MM IY+RN 
Sbjct: 210 ILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNN 269

Query: 213 RLEDLVKLFKDLEAFGRKPPDKSIVQRVADACEMLGLLEEKERVLVKYKYLFDEKEGPMK 272
            L++LVKLFKDLE++ RKPPDK IVQ VADA E+LG+L+EKERV+ KY +L        K
Sbjct: 270 MLQELVKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYSHLLLGTPSDDK 329

Query: 273 KYKRISFEKSKRKRKSTKGTEDNSNLVKSE 303
             +    +K    R     TE   +  K+E
Sbjct: 330 PSRSSRKKKKPELRIPEATTEGAVDAAKAE 354

[Close]

BLAST of CSPI07G05170 vs. TAIR 10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 278.5 bits (711), Expect = 6.5e-75
Identity = 151/273 (55.31%), Postives = 185/273 (67.77%), Query Frame = 0


Query: 33  LQVGSSCYCTTIQDQMCQQLADKDRKDKDVNSSKALGHISEQNIGDIRKHQIGKNISRKD 92
           L+V S  Y          +   K+  ++D + S   G     N  + RKHQIG+NI +KD
Sbjct: 90  LRVQSMSYQFVADSHSSPKRIVKNEDEEDFSDSSKKG-----NAENPRKHQIGENIPKKD 149

Query: 93  KIHFLVNTLLDLRDSKEAVYGALDAWVAWEQDFPIAPLKHVLAALEKEQQWHRIVQVIKW 152
           KI FLVNTLLD+ D+KEAVYGALDAWVAWE++FPIA LK V+A+LEKE QWHR+VQVIKW
Sbjct: 150 KIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKW 209

Query: 153 MLSKGQGTTMNVYGQLIRALDMDHRGEEAHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNK 212
           +LSKGQG TM  YGQLIRALDMD R EEAH  W  K+G+DLHSVPWQ+C  MM IY+RN 
Sbjct: 210 ILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNN 269

Query: 213 RLEDLV---KLFKDLEAFGRKPPDKSIVQRVADACEMLGLLEEKERVLVKYKYLFDEKEG 272
            L++LV   KLFKDLE++ RKPPDK IVQ VADA E+LG+L+EKERV+ KY +L      
Sbjct: 270 MLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYSHLLLGTPS 329

Query: 273 PMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 303
             K  +    +K    R     TE   +  K+E
Sbjct: 330 DDKPSRSSRKKKKPELRIPEATTEGAVDAAKAE 357

[Close]

BLAST of CSPI07G05170 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-32
Identity = 81/219 (36.99%), Postives = 121/219 (55.25%), Query Frame = 0


Query: 69  GHISEQNIGDIRK-----HQIGK---NISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 128
           G+++  N  +I+K     H + K   +     K   LV  L  L + KEAVYGAL+ WVA
Sbjct: 65  GYVATVNSKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVA 124

Query: 129 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 188
           WE +FPI      L  L K  QWHR++Q+ KWMLSKGQG TM  Y  L+ A DMD R +E
Sbjct: 125 WEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADE 184

Query: 189 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 248
           A   W M + +   S+P ++   M+A+Y  +   + ++++F D+E   +  PD+   +RV
Sbjct: 185 AESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEEL-KVSPDEDSARRV 244

Query: 249 ADACEMLGLLEEKE----RVLVKYKYL-FDEKEGPMKKY 275
           A A   L   E ++    R L +YKY+ F+ +   +K+Y
Sbjct: 245 ARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 282

[Close]

BLAST of CSPI07G05170 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-32
Identity = 81/219 (36.99%), Postives = 121/219 (55.25%), Query Frame = 0


Query: 69  GHISEQNIGDIRK-----HQIGK---NISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 128
           G+++  N  +I+K     H + K   +     K   LV  L  L + KEAVYGAL+ WVA
Sbjct: 38  GYVATVNSKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVA 97

Query: 129 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 188
           WE +FPI      L  L K  QWHR++Q+ KWMLSKGQG TM  Y  L+ A DMD R +E
Sbjct: 98  WEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADE 157

Query: 189 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 248
           A   W M + +   S+P ++   M+A+Y  +   + ++++F D+E   +  PD+   +RV
Sbjct: 158 AESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEEL-KVSPDEDSARRV 217

Query: 249 ADACEMLGLLEEKE----RVLVKYKYL-FDEKEGPMKKY 275
           A A   L   E ++    R L +YKY+ F+ +   +K+Y
Sbjct: 218 ARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 255

[Close]

BLAST of CSPI07G05170 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-32
Identity = 81/219 (36.99%), Postives = 121/219 (55.25%), Query Frame = 0


Query: 69  GHISEQNIGDIRK-----HQIGK---NISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 128
           G+++  N  +I+K     H + K   +     K   LV  L  L + KEAVYGAL+ WVA
Sbjct: 65  GYVATVNSKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVA 124

Query: 129 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 188
           WE +FPI      L  L K  QWHR++Q+ KWMLSKGQG TM  Y  L+ A DMD R +E
Sbjct: 125 WEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADE 184

Query: 189 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 248
           A   W M + +   S+P ++   M+A+Y  +   + ++++F D+E   +  PD+   +RV
Sbjct: 185 AESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEEL-KVSPDEDSARRV 244

Query: 249 ADACEMLGLLEEKE----RVLVKYKYL-FDEKEGPMKKY 275
           A A   L   E ++    R L +YKY+ F+ +   +K+Y
Sbjct: 245 ARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 282

The following BLAST results are available for this feature:

BLAST of CSPI07G05170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3H0	5.6e-31	36.99	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
Q8LG95	7.5e-28	37.71	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]

BLAST of CSPI07G05170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C174	7.1e-154	91.39	pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis ...	[more]
A0A6J1HUZ4	2.1e-134	80.73	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1HGC4	3.1e-133	80.07	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1DNN5	1.4e-130	78.22	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 ...	[more]
A0A6J1DM10	1.4e-130	78.22	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]

BLAST of CSPI07G05170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136857.2	1.5e-169	100.00	pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis sa...	[more]
XP_008455250.1	1.5e-153	91.39	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
XP_038887984.1	1.2e-144	86.14	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022967610.1	4.4e-134	80.73	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
KAG6571702.1	1.3e-133	80.73	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]

BLAST of CSPI07G05170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04590.1	1.5e-76	55.93	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT1G04590.2	6.5e-75	55.31	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT4G18975.1	4.0e-32	36.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.2	4.0e-32	36.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.3	4.0e-32	36.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 296..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..302
None	No IPR available	PANTHER	PTHR47603:SF1	PPR CONTAINING-LIKE PROTEIN	coord: 6..293
None	No IPR available	PANTHER	PTHR47603	PPR CONTAINING-LIKE PROTEIN	coord: 6..293
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 92..269 e-value: 2.0E-8 score: 35.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G05170.1	CSPI07G05170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding