CSPI07G01700 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G01700
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Plant regulator RWP-RK family protein
Location	Chr7: 1502425 .. 1502854 (+)
RNA-Seq Expression	CSPI07G01700
Synteny	CSPI07G01700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTGCTTGAACTTCCTGTTTTTGCAGTTTGTTCAACTTCTCTAAAGTGGATATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGTGAGAGACCATCAGAGGCAATAAACTATCAAGTTGGCAATGGCTCGTTCAGCCATCGACCCCATGCAAAGTCCCCATTCTCTTCATGTACTCAGACTTCTGGTTCAGGCAGTTAGTGCCCTACCGGAGCAAGGCAACATAATCCAATGGATTTTTCAGCAAACTTTAAAAAGCTCAATT

mRNA sequence

GGCTGCTTGAACTTCCTGTTTTTGCAGTTTGTTCAACTTCTCTAAAGTGGATATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGTGAGAGACCATCAGAGGCAATAAACTATCAAGTTGGCAATGGCTCGTTCAGCCATCGACCCCATGCAAAGTCCCCATTCTCTTCATGTACTCAGACTTCTGGTTCAGGCAGTTAGTGCCCTACCGGAGCAAGGCAACATAATCCAATGGATTTTTCAGCAAACTTTAAAAAGCTCAATT

Coding sequence (CDS)

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGTGAGAGACCATCAGAGGCAATAA

Protein sequence

MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSSTMVRDHQRQ*

Homology

[Close]

BLAST of CSPI07G01700 vs. ExPASy Swiss-Prot
Match: Q7X9B9 (Protein NLP2 OS=Arabidopsis thaliana OX=3702 GN=NLP2 PE=2 SV=3)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-13
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

[Close]

BLAST of CSPI07G01700 vs. ExPASy Swiss-Prot
Match: Q8H111 (Protein NLP1 OS=Arabidopsis thaliana OX=3702 GN=NLP1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.3e-13
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]

BLAST of CSPI07G01700 vs. ExPASy Swiss-Prot
Match: Q9SVF1 (Protein NLP3 OS=Arabidopsis thaliana OX=3702 GN=NLP3 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-10
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

[Close]

BLAST of CSPI07G01700 vs. ExPASy Swiss-Prot
Match: Q9LE38 (Protein NLP4 OS=Arabidopsis thaliana OX=3702 GN=NLP4 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-09
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 653

[Close]

BLAST of CSPI07G01700 vs. ExPASy Swiss-Prot
Match: Q10S83 (Protein NLP1 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-08
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESF 49
           I R PSRKIKKVGH SL KLQ+V+DSV G +G++Q+ + YE+F
Sbjct: 659 INRWPSRKIKKVGH-SLKKLQMVIDSVHGPEGTVQLSSLYENF 700

[Close]

BLAST of CSPI07G01700 vs. ExPASy TrEMBL
Match: A0A0A0K676 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024110 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
          MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61 HCSSTM 67
          HCSSTM
Sbjct: 61 HCSSTM 66

[Close]

BLAST of CSPI07G01700 vs. ExPASy TrEMBL
Match: A0A1R3JB45 (Phox/Bem1p OS=Corchorus olitorius OX=93759 GN=COLO4_17931 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+LN+P+F      SS 
Sbjct: 672 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYSSFPELNSPNFSGNGPSSSL 731

Query: 66  MVRDHQR 73
           M+ DH +
Sbjct: 732 MISDHSK 737

[Close]

BLAST of CSPI07G01700 vs. ExPASy TrEMBL
Match: A0A5E4FGX0 (PREDICTED: NLP2 OS=Prunus dulcis OX=3755 GN=ALMOND_2B029599 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS 
Sbjct: 196 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSM 255

Query: 66  MVRDHQRQ 74
            + DH +Q
Sbjct: 256 NMSDHSKQ 262

[Close]

BLAST of CSPI07G01700 vs. ExPASy TrEMBL
Match: M5VGP2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018195mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS 
Sbjct: 599 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSM 658

Query: 66  MVRDHQRQ 74
            + DH +Q
Sbjct: 659 NMSDHSKQ 665

[Close]

BLAST of CSPI07G01700 vs. ExPASy TrEMBL
Match: A0A251MZJ0 (RWP-RK domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_8G178400 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS 
Sbjct: 505 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSM 564

Query: 66  MVRDHQRQ 74
            + DH +Q
Sbjct: 565 NMSDHSKQ 571

[Close]

BLAST of CSPI07G01700 vs. NCBI nr
Match: KGN43336.1 (hypothetical protein Csa_020575 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
          MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61 HCSSTM 67
          HCSSTM
Sbjct: 61 HCSSTM 66

[Close]

BLAST of CSPI07G01700 vs. NCBI nr
Match: XP_031254764.1 (protein NLP2-like isoform X1 [Pistacia vera] >XP_031254765.1 protein NLP2-like isoform X1 [Pistacia vera] >XP_031254766.1 protein NLP2-like isoform X1 [Pistacia vera])

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+GSIQIG+FY SFP+LN+P+F   D  SS 
Sbjct: 659 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGSIQIGSFYNSFPELNSPNFSGNDPFSSV 718

Query: 66  MVRDH 71
              DH
Sbjct: 719 KTSDH 722

[Close]

BLAST of CSPI07G01700 vs. NCBI nr
Match: XP_031254767.1 (protein NLP2-like isoform X2 [Pistacia vera])

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+GSIQIG+FY SFP+LN+P+F   D  SS 
Sbjct: 643 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGSIQIGSFYNSFPELNSPNFSGNDPFSSV 702

Query: 66  MVRDH 71
              DH
Sbjct: 703 KTSDH 706

[Close]

BLAST of CSPI07G01700 vs. NCBI nr
Match: OMO92016.1 (Phox/Bem1p [Corchorus olitorius])

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+LN+P+F      SS 
Sbjct: 672 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYSSFPELNSPNFSGNGPSSSL 731

Query: 66  MVRDHQR 73
           M+ DH +
Sbjct: 732 MISDHSK 737

[Close]

BLAST of CSPI07G01700 vs. NCBI nr
Match: VVA26570.1 (PREDICTED: NLP2 [Prunus dulcis])

HSP 1 Score: 90.9 bits (224), Expect = 5.0e-15
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS 
Sbjct: 196 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSM 255

Query: 66  MVRDHQRQ 74
            + DH +Q
Sbjct: 256 NMSDHSKQ 262

[Close]

BLAST of CSPI07G01700 vs. TAIR 10
Match: AT4G35270.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

[Close]

BLAST of CSPI07G01700 vs. TAIR 10
Match: AT2G17150.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 73.9 bits (180), Expect = 5.9e-14
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]

BLAST of CSPI07G01700 vs. TAIR 10
Match: AT4G38340.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

[Close]

BLAST of CSPI07G01700 vs. TAIR 10
Match: AT1G20640.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 653

[Close]

BLAST of CSPI07G01700 vs. TAIR 10
Match: AT1G20640.2 (Plant regulator RWP-RK family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 653

The following BLAST results are available for this feature:

BLAST of CSPI07G01700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X9B9	6.4e-13	68.52	Protein NLP2 OS=Arabidopsis thaliana OX=3702 GN=NLP2 PE=2 SV=3	[more]
Q8H111	8.3e-13	74.00	Protein NLP1 OS=Arabidopsis thaliana OX=3702 GN=NLP1 PE=2 SV=1	[more]
Q9SVF1	3.0e-10	64.00	Protein NLP3 OS=Arabidopsis thaliana OX=3702 GN=NLP3 PE=2 SV=1	[more]
Q9LE38	2.5e-09	53.33	Protein NLP4 OS=Arabidopsis thaliana OX=3702 GN=NLP4 PE=2 SV=1	[more]
Q10S83	4.7e-08	62.79	Protein NLP1 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP1 PE=2 SV=1	[more]

BLAST of CSPI07G01700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K676	1.2e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024110 PE=4 SV=1	[more]
A0A1R3JB45	1.1e-15	67.16	Phox/Bem1p OS=Corchorus olitorius OX=93759 GN=COLO4_17931 PE=4 SV=1	[more]
A0A5E4FGX0	2.4e-15	66.18	PREDICTED: NLP2 OS=Prunus dulcis OX=3755 GN=ALMOND_2B029599 PE=4 SV=1	[more]
M5VGP2	2.4e-15	66.18	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018195mg PE=4 SV=1	[more]
A0A251MZJ0	2.4e-15	66.18	RWP-RK domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_8G178400 PE=...	[more]

BLAST of CSPI07G01700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43336.1	2.5e-30	100.00	hypothetical protein Csa_020575 [Cucumis sativus]	[more]
XP_031254764.1	2.2e-15	70.77	protein NLP2-like isoform X1 [Pistacia vera] >XP_031254765.1 protein NLP2-like i...	[more]
XP_031254767.1	2.2e-15	70.77	protein NLP2-like isoform X2 [Pistacia vera]	[more]
OMO92016.1	2.2e-15	67.16	Phox/Bem1p [Corchorus olitorius]	[more]
VVA26570.1	5.0e-15	66.18	PREDICTED: NLP2 [Prunus dulcis]	[more]

BLAST of CSPI07G01700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35270.1	4.5e-14	68.52	Plant regulator RWP-RK family protein	[more]
AT2G17150.1	5.9e-14	74.00	Plant regulator RWP-RK family protein	[more]
AT4G38340.1	2.1e-11	64.00	Plant regulator RWP-RK family protein	[more]
AT1G20640.1	1.8e-10	53.33	Plant regulator RWP-RK family protein	[more]
AT1G20640.2	1.8e-10	53.33	Plant regulator RWP-RK family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32002:SF46	PROTEIN NLP2	coord: 6..61
IPR045012	Protein NLP	PANTHER	PTHR32002	PROTEIN NLP8	coord: 6..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G01700.1	CSPI07G01700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity