CSPI07G00330 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G00330
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 395534 .. 395842 (+)
RNA-Seq Expression	CSPI07G00330
Synteny	CSPI07G00330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCCCATATACGATAAAGAAGGCTTTATTCTTAGAAGTAGAGAGAAGAGATTTAGTGTGACAAAGCTCGAGGAAAAAAGAAGAGGTTCGATGAGTAGAGGGAGGTATGAAAATGGTTTTAAGAGTGAAGGCAGTAGTGAAATGGGGTTTTCGGGAGCAAGAACTAGAAGAAAAACCAGAAGCAAAGGAGAACTAGTGAAGAAGAGAGAGACGCTTATATATAGAGGCATGCATAGAAGGGCAGAAAGCAACGAACAAATGCTAGTGTGGGTGACGTGGGCAAGGTGGAGGAAGAACGTACGGTGA

mRNA sequence

ATGCGGCCCATATACGATAAAGAAGGCTTTATTCTTAGAAGTAGAGAGAAGAGATTTAGTGTGACAAAGCTCGAGGAAAAAAGAAGAGGTTCGATGAGTAGAGGGAGGTATGAAAATGGTTTTAAGAGTGAAGGCAGTAGTGAAATGGGGTTTTCGGGAGCAAGAACTAGAAGAAAAACCAGAAGCAAAGGAGAACTAGTGAAGAAGAGAGAGACGCTTATATATAGAGGCATGCATAGAAGGGCAGAAAGCAACGAACAAATGCTAGTGTGGGTGACGTGGGCAAGGTGGAGGAAGAACGTACGGTGA

Coding sequence (CDS)

ATGCGGCCCATATACGATAAAGAAGGCTTTATTCTTAGAAGTAGAGAGAAGAGATTTAGTGTGACAAAGCTCGAGGAAAAAAGAAGAGGTTCGATGAGTAGAGGGAGGTATGAAAATGGTTTTAAGAGTGAAGGCAGTAGTGAAATGGGGTTTTCGGGAGCAAGAACTAGAAGAAAAACCAGAAGCAAAGGAGAACTAGTGAAGAAGAGAGAGACGCTTATATATAGAGGCATGCATAGAAGGGCAGAAAGCAACGAACAAATGCTAGTGTGGGTGACGTGGGCAAGGTGGAGGAAGAACGTACGGTGA

Protein sequence

MRPIYDKEGFILRSREKRFSVTKLEEKRRGSMSRGRYENGFKSEGSSEMGFSGARTRRKTRSKGELVKKRETLIYRGMHRRAESNEQMLVWVTWARWRKNVR*

Homology

[Close]

BLAST of CSPI07G00330 vs. ExPASy TrEMBL
Match: A0A0A0K5Q6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G005470 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.4e-47
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MRPIYDKEGFILRSREKRFSVTKLEEKRRGSMSRGRYENGFKSEGSSEMGFSGARTRRKT 60
           MRPIYDKEGFILRSREKRFSVTKLEEKRRGSMSRGRY+NGF SEGSSEMGFSGARTRRKT
Sbjct: 1   MRPIYDKEGFILRSREKRFSVTKLEEKRRGSMSRGRYKNGFMSEGSSEMGFSGARTRRKT 60

Query: 61  RSKGELVKKRETLIYRGMHRRAESNEQMLVWVTWARWRKNVR 103
           RSKGELVKKRETLIYRGMHRRAESNEQMLVWVTWARWRKNVR
Sbjct: 61  RSKGELVKKRETLIYRGMHRRAESNEQMLVWVTWARWRKNVR 102

[Close]

BLAST of CSPI07G00330 vs. NCBI nr
Match: KGN43171.1 (hypothetical protein Csa_020304 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 9.0e-47
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MRPIYDKEGFILRSREKRFSVTKLEEKRRGSMSRGRYENGFKSEGSSEMGFSGARTRRKT 60
           MRPIYDKEGFILRSREKRFSVTKLEEKRRGSMSRGRY+NGF SEGSSEMGFSGARTRRKT
Sbjct: 1   MRPIYDKEGFILRSREKRFSVTKLEEKRRGSMSRGRYKNGFMSEGSSEMGFSGARTRRKT 60

Query: 61  RSKGELVKKRETLIYRGMHRRAESNEQMLVWVTWARWRKNVR 103
           RSKGELVKKRETLIYRGMHRRAESNEQMLVWVTWARWRKNVR
Sbjct: 61  RSKGELVKKRETLIYRGMHRRAESNEQMLVWVTWARWRKNVR 102

The following BLAST results are available for this feature:

BLAST of CSPI07G00330 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G00330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Q6	4.4e-47	98.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G005470 PE=4 SV=1	[more]

BLAST of CSPI07G00330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43171.1	9.0e-47	98.04	hypothetical protein Csa_020304 [Cucumis sativus]	[more]

BLAST of CSPI07G00330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G00330.1	CSPI07G00330.1	mRNA