CSPI06G35190 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G35190
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 28708977 .. 28711376 (+)
RNA-Seq ExpressionCSPI06G35190
SyntenyCSPI06G35190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTGAGACTCTGGGCGGAAAAAAAAACAAAACAAAAAAAAACAAAACAAAACAAAACCAGACAAACAAACAAAGGGGAAATTAGGCTGACTATTTGCTGAACTACAAAGGAGCTGGGCGATGAGGACCATCTTTTCAACTTTGGCTAGCCAGATAGACAAATCCAATTATCACTCTGCACTTTATCACATCTACGTACACCAACCTCAGAACAACCTATGTATGAGTCGTTGTACCAGATTTCTCTTTGGGGTATATTTATTTATTCAAACGAAATCTCTTTGGGATATATTTGATCTAATTTTATATAAAAGTAATATACAGAGTAGCTTCATAAGAAAATTTAAACCTCCTCATGTTTATCCTTGGTGCATCGTCAAGAGATAACTAAAAAACACTCGCAAGTAATTAAAAGAAAGAGTAAAGAAGGTTAATAAGAAAAAGCCGCAATAGTCTTAAAAAAAAAAAGAAGATGTAGATAAAACAACTATATCCTTGTTTTTTTTATCATTCCTCTTCTGTGGGCCTCAAATCCTCTAACAGTGCCTCAAGAATTAGCTGAAAATTTTATGGCAGTTTGTGGATGCTTTATATACGGCATTGAATTGGTACTTGGAACCGTATTATATCATTTACTTCAAGTTGTCAATTAGGTTCAGCCTCTAGAGTATTATCAATTTCTCGGGACATTTATTGCAGAATATTAGGTCATGGTAGGCTGTAAAGCAAACTCTGTTAAAGGAGGATTAAAATGGAAATATCTTTTGTGAAAATAAGGTAGTGTTCCTTAGATGAAGTAAAGGATGGATACCAGCTAATTTCAGAAGCTTTCATTACTTTGGATATTTTCATTTTCCACGGGCTGTTTTTCTTTACAATCATATGATTCCCTTCGTTTCCTCTCTTTCATGCCTAGTTCCAGTCGAGGTTTCCCCTAACTGTCTTAAAGAATTAAACGAATGGTTTAGCATGAATAATATTAGAGAAGTGTAAATAGCTGCCAAATTGGATTCACCAACCAACCCTATCGAAGTATTAGGAAATGGAAATTTGAATTGCAGTATCACAAAAACCACTACCTCTTGAAAATACAATGTATTCATCTCATTTGAGGATAACAAAAACAATCGTCCTGACTAGGATTGAGGAGAAAAGTTCTAGCACTATGGTAGTATGGGATGCTTATTGGCTAGTGATTGATTTCTATTCATTTTTAATTACATTATTAGTTGTTTTAATATTTCATTTTAGGTTATTATAAGCTTCTTTTTTGAACTTTAAGACTTGTACGTGTTTATTTAATTTGTGATTTCCTAAACCTTTAGAATTAACCATATAACCTTTATACTCCGAAAAAGTTTCTAAATAATATCGCCTATAAAATTTTAATTTTGTTTAATAGATCTGCCATTCCTTCACTTGGTTTAACCATTTTTAAGTCCATTGAAATCAACTTGCCATGTAGTATCCTTAAGTATTGTGCCTGATCAACGTTAAAAGTATAGTATAGAGACTAAATGGATACAATTACAATTAACTTGAGAGTTTTGAGACAACTAATTGGTTGATGTGTTATAATTTTGCCCAAAAGGTTAGATGTTGAAATTCTGAACTAAAAGCAATTATTGAAAGAAAAAAAAAATTCACATTATAATTTACCAAAAACATTTAACTTTTGGGATTATGGAAGCTTGGTGATCTAGGTAGAGACAGGGAGCCGACCGACAGTTGCTCCAAAGGCCTCGTCTTTAAAAAATAATCAGAATAAAGTCTTAAAATTAATTAGGATGTATTCTTGTGTAGATCATTTTTTTTTCCTGTTAGGCTTCACCTCGAGTCATTCGTTGCTTTGCCTCGCTAATCCCAAGTAACAATTACATTTCCCTATTTGAGTGAATGAAGTATTGATCAACAGATTTTTCACGACAGTTTAAAGATCTAAACAATTTTCTGGTTAATTGGCCCGATAGATATCATGCTAAAGCTATGTAAGAGGACAAAATATGAATTCTTTAAGTTGAGCCAATAAATTCAGTTAGGAATAATTAGATTAAAAAAACGTAAAGATGGTTTTGGCTCGAGTATAAAAAGCTGCCATATCCCAACACTACTTAACACATCGCCACAAACTATTGCTTCAAATACAAACAGATATTAAATAGCAATGGCCAAGCTTAGCTTGTGGGTATGCCTGATCTTGGTGGCCTCCTACTGTTTTGCAGGCTCTGAATCTCGGCAACTTGAGCCAAAATTAGCTGCTAAGTCACATCGGCCAGCGCTGTTGGGTTCCAGAGACAACTTTCACATTGGAATGGTAGCCGTCGAAGGCTCCGGAAGCATTCCTCAACGAGGGGTGGCTCGCCTGTCACCGGGAGGCCCTGATCCCCGCCACCATTGA

mRNA sequence

AAAATTGAGACTCTGGGCGGAAAAAAAAACAAAACAAAAAAAAACAAAACAAAACAAAACCAGACAAACAAACAAAGGGGAAATTAGGCTGACTATTTGCTGAACTACAAAGGAGCTGGGCGATGAGGACCATCTTTTCAACTTTGGCTAGCCAGATAGACAAATCCAATTATCACTCTGCACTTTATCACATCTACGTACACCAACCTCAGAACAACCTATGCTCTGAATCTCGGCAACTTGAGCCAAAATTAGCTGCTAAGTCACATCGGCCAGCGCTGTTGGGTTCCAGAGACAACTTTCACATTGGAATGGTAGCCGTCGAAGGCTCCGGAAGCATTCCTCAACGAGGGGTGGCTCGCCTGTCACCGGGAGGCCCTGATCCCCGCCACCATTGA

Coding sequence (CDS)

ATGAGGACCATCTTTTCAACTTTGGCTAGCCAGATAGACAAATCCAATTATCACTCTGCACTTTATCACATCTACGTACACCAACCTCAGAACAACCTATGCTCTGAATCTCGGCAACTTGAGCCAAAATTAGCTGCTAAGTCACATCGGCCAGCGCTGTTGGGTTCCAGAGACAACTTTCACATTGGAATGGTAGCCGTCGAAGGCTCCGGAAGCATTCCTCAACGAGGGGTGGCTCGCCTGTCACCGGGAGGCCCTGATCCCCGCCACCATTGA

Protein sequence

MRTIFSTLASQIDKSNYHSALYHIYVHQPQNNLCSESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH*
Homology
[Close]
BLAST of CSPI06G35190 vs. ExPASy TrEMBL
Match: A0A0A0KNI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.9e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 35 SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 92
          SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH
Sbjct: 21 SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 77

[Close]
BLAST of CSPI06G35190 vs. ExPASy TrEMBL
Match: A0A5A7UEP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008020 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 35 SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 92
          SESR LEPKLAA+SHRPALLGSRDNFHIG+VAVEGS SIPQRGVARLSPGGPDPRHH
Sbjct: 21 SESRLLEPKLAARSHRPALLGSRDNFHIGLVAVEGSESIPQRGVARLSPGGPDPRHH 77

[Close]
BLAST of CSPI06G35190 vs. ExPASy TrEMBL
Match: A0A0A0KLM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 35  SESRQLE-PKLAAKSHRPALLGSRDNFHIGMVA-VEGSGSIPQRGVARLSPGGPDPRHH 92
           S SR L+     AKS++PALLGS+ NF + +VA VE  G+I QR  AR SPGGPDP HH
Sbjct: 67  SNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFGTIHQREAARQSPGGPDPHHH 125

[Close]
BLAST of CSPI06G35190 vs. NCBI nr
Match: KAE8647711.1 (hypothetical protein Csa_003452 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 35   SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 92
            SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH
Sbjct: 965  SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 1021

[Close]
BLAST of CSPI06G35190 vs. NCBI nr
Match: KAA0052636.1 (hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK13190.1 hypothetical protein E5676_scaffold255G008020 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 35 SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 92
          SESR LEPKLAA+SHRPALLGSRDNFHIG+VAVEGS SIPQRGVARLSPGGPDPRHH
Sbjct: 21 SESRLLEPKLAARSHRPALLGSRDNFHIGLVAVEGSESIPQRGVARLSPGGPDPRHH 77

[Close]
BLAST of CSPI06G35190 vs. NCBI nr
Match: KAG6581347.1 (hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 9.6e-16
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 35  SESRQL-----EPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPR 92
           ++SR+L     EP + AK++RPALLGS++NFHIG+VAVEGSGSI QRGVARLSPGGPDPR
Sbjct: 693 ADSRRLVGFNSEPNVPAKTYRPALLGSKENFHIGLVAVEGSGSIHQRGVARLSPGGPDPR 752

[Close]
BLAST of CSPI06G35190 vs. NCBI nr
Match: KAE8647712.1 (hypothetical protein Csa_003203 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 35 SESRQLE-PKLAAKSHRPALLGSRDNFHIGMVA-VEGSGSIPQRGVARLSPGGPDPRHH 92
          S SR L+     AKS++PALLGS+ NF + +VA VE  G+I QR  AR SPGGPDP HH
Sbjct: 22 SNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFGTIHQREAARQSPGGPDPHHH 80

The following BLAST results are available for this feature:
BLAST of CSPI06G35190 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G35190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNI47.9e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1[more]
A0A5A7UEP52.2e-2192.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KLM51.1e-0657.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1[more]
BLAST of CSPI06G35190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647711.11.6e-23100.00hypothetical protein Csa_003452 [Cucumis sativus][more]
KAA0052636.14.4e-2192.98hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK131... [more]
KAG6581347.19.6e-1672.58hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647712.12.4e-0657.63hypothetical protein Csa_003203 [Cucumis sativus][more]
BLAST of CSPI06G35190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G35190.1CSPI06G35190.1mRNA