CSPI06G34390 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G34390
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Late endosome and vacuole interface protein
Location	Chr6: 28261516 .. 28261794 (+)
RNA-Seq Expression	CSPI06G34390
Synteny	CSPI06G34390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTTGTGGGAGGCATAGAATGGATGAATACTTACAGTAGAAAGCAATTCAAGAAACTGTTCTGGAGGATGAGAGCTGCGATGAAGAAAGCCATCAAGAAGGGAAGCAAGCAGCAGTTCAGGTTTCAGTATGATCCTTGCAGCTACGCTCTAAATTTTGACGATGGATTATGCAAATTTGAAGCTGTCGCAAGTGAAACACATGCTAAGTTTCAAGCTAGTTCAAATTTGAATCACTCTGCCATGTGGGTTTTTGTACTTTTGGTGAAATCTGAG

mRNA sequence

ATGGGATTTGTGGGAGGCATAGAATGGATGAATACTTACAGTAGAAAGCAATTCAAGAAACTGTTCTGGAGGATGAGAGCTGCGATGAAGAAAGCCATCAAGAAGGGAAGCAAGCAGCAGTTCAGGTTTCAGTATGATCCTTGCAGCTACGCTCTAAATTTTGACGATGGATTATGCAAATTTGAAGCTGTCGCAAGTGAAACACATGCTAAGTTTCAAGCTAGTTCAAATTTGAATCACTCTGCCATGTGGGTTTTTGTACTTTTGGTGAAATCTGAG

Coding sequence (CDS)

ATGGGATTTGTGGGAGGCATAGAATGGATGAATACTTACAGTAGAAAGCAATTCAAGAAACTGTTCTGGAGGATGAGAGCTGCGATGAAGAAAGCCATCAAGAAGGGAAGCAAGCAGCAGTTCAGGTTTCAGTATGATCCTTGCAGCTACGCTCTAAATTTTGACGATGGATTATGCAAATTTGAAGCTGTCGCAAGTGAAACACATGCTAAGTTTCAAGCTAGTTCAAATTTGAATCACTCTGCCATGTGGGTTTTTGTACTTTTGGTGAAATCTGAG

Protein sequence

MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCKFEAVASETHAKFQASSNLNHSAMWVFVLLVKSE

Homology

[Close]

BLAST of CSPI06G34390 vs. ExPASy TrEMBL
Match: A0A5C7GSN3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026626 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.5e-19
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDD---- 60
           MGFV   EW+N+Y ++Q K LFWR+RAA+KKA+K GSK QF+FQYDP SYALNFDD    
Sbjct: 1   MGFVESFEWVNSYGKRQCKSLFWRVRAALKKAMKNGSKNQFKFQYDPLSYALNFDDGGGG 60

Query: 61  -GLCK--FEAVASETHAKFQ-ASSNLNHSAMWVFVLLVKSE 94
            G CK   ++ +     KFQ  +S  N+  MWV+V+LV+ E
Sbjct: 61  GGGCKMGLDSNSGRHDNKFQDCASETNNIMMWVYVVLVEKE 101

[Close]

BLAST of CSPI06G34390 vs. ExPASy TrEMBL
Match: A0A2C9U8B6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G023500 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1  MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +G  EWMN++S+KQ K LFWR++AA+KKA+K G KQQ  FQYDP SYALNFDDG C 
Sbjct: 1  MGLMGRFEWMNSFSKKQCKSLFWRVKAAVKKAVKNGGKQQVNFQYDPSSYALNFDDGCCH 60

Query: 61 FEAVASETHAKFQASSNLNHSAMWVFVLLVKS 93
          F     E   +     N     +WV+VL V+S
Sbjct: 61 FGREKYEVRPRKSEDGN---KTIWVYVLWVES 89

[Close]

BLAST of CSPI06G34390 vs. ExPASy TrEMBL
Match: A0A2C9U5L8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G041400 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-18
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 1  MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +G +EWMN++S+KQ K LFWR++AA+KKA+K G KQQ  FQYDP SYALNFDDG C 
Sbjct: 1  MGLIGRLEWMNSFSKKQCKSLFWRVKAAVKKAVKNGGKQQVNFQYDPSSYALNFDDGCCH 60

Query: 61 FEAVASETHAKFQASSNLNHSAMWVFVLLVKS 93
          F   + E  +     S   +  +W++V+ V+S
Sbjct: 61 FGRGSYEVKS---GKSQDGNETVWLYVVWVES 89

[Close]

BLAST of CSPI06G34390 vs. ExPASy TrEMBL
Match: A0A7J8MLK3 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_010486 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIK-KGSKQQFRFQYDPCSYALNFDDGLCKF 62
          F+G +EW+N+Y +KQ + LFWR +AAMKKA+K +G+K+QF+FQYDP SYALNFDDG C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EAVASETH-AKFQASSNLNHSAMWVFVLLVKS 93
             A+    A+ Q  S   +  +WV+VL VKS
Sbjct: 67 GVEANTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of CSPI06G34390 vs. ExPASy TrEMBL
Match: A0A061GFJ8 (Glucose-fructose oxidoreductase domain-containing protein 2, putative OS=Theobroma cacao OX=3641 GN=TCM_029942 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.6e-18
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1   MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCK 60
           M F+G +EW+N+Y +KQ + LFWR++AA+KKA+K  SKQQF+F YDP SYALNFDDG C 
Sbjct: 30  MDFMGRLEWVNSYGKKQCRSLFWRVKAALKKAVKSRSKQQFKFHYDPSSYALNFDDGCCH 89

Query: 61  FEAVASETH-AKFQASSNLNHSAMWVFVLLVKS 93
             A A+    A+F   S    + +WV+VL VKS
Sbjct: 90  SGAGANTIEPARFPDCSECK-NIVWVYVLWVKS 121

[Close]

BLAST of CSPI06G34390 vs. NCBI nr
Match: KAG6594620.1 (hypothetical protein SDJN03_11173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 7.7e-29
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 15  RKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCKFEAVASETHAKFQA 74
           RKQF+KLFWRMRAAMKKAIK G K++F FQYDPCSYALNFDDG CKFEAVA E  AK Q 
Sbjct: 89  RKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCKFEAVAPEEPAKIQI 148

Query: 75  SSNLNHSAMWVFVLLVKSE 94
           SSNLNHS MWVFVLLVKSE
Sbjct: 149 SSNLNHSPMWVFVLLVKSE 167

[Close]

BLAST of CSPI06G34390 vs. NCBI nr
Match: KAF3451534.1 (hypothetical protein FNV43_RR07629 [Rhamnella rubrinervis])

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-21
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +  + W+NTYSRK  + LFWR+RAA+KKA+K G KQQ RFQYDPCSYALNFDDG CK
Sbjct: 5  MGLIASLVWVNTYSRKHCRSLFWRVRAALKKAVKNGGKQQIRFQYDPCSYALNFDDGGCK 64

Query: 61 F-EAVASET-HAKFQASSNLNHSAMWVFVLLVKSE 94
            EA  + + HAK Q  S+  +S  WV+VL VK++
Sbjct: 65 LGEAQTTPSQHAKHQCHSDTKNS-KWVYVLWVKAD 98

[Close]

BLAST of CSPI06G34390 vs. NCBI nr
Match: TXG47332.1 (hypothetical protein EZV62_026626 [Acer yangbiense])

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-19
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDD---- 60
           MGFV   EW+N+Y ++Q K LFWR+RAA+KKA+K GSK QF+FQYDP SYALNFDD    
Sbjct: 1   MGFVESFEWVNSYGKRQCKSLFWRVRAALKKAMKNGSKNQFKFQYDPLSYALNFDDGGGG 60

Query: 61  -GLCK--FEAVASETHAKFQ-ASSNLNHSAMWVFVLLVKSE 94
            G CK   ++ +     KFQ  +S  N+  MWV+V+LV+ E
Sbjct: 61  GGGCKMGLDSNSGRHDNKFQDCASETNNIMMWVYVVLVEKE 101

[Close]

BLAST of CSPI06G34390 vs. NCBI nr
Match: OAY26128.1 (hypothetical protein MANES_16G023500v8 [Manihot esculenta])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1  MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +G  EWMN++S+KQ K LFWR++AA+KKA+K G KQQ  FQYDP SYALNFDDG C 
Sbjct: 1  MGLMGRFEWMNSFSKKQCKSLFWRVKAAVKKAVKNGGKQQVNFQYDPSSYALNFDDGCCH 60

Query: 61 FEAVASETHAKFQASSNLNHSAMWVFVLLVKS 93
          F     E   +     N     +WV+VL V+S
Sbjct: 61 FGREKYEVRPRKSEDGN---KTIWVYVLWVES 89

[Close]

BLAST of CSPI06G34390 vs. NCBI nr
Match: KAG7958932.1 (hypothetical protein I3843_10G045200 [Carya illinoinensis])

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MGFVGGIEWMNTYSRKQFKKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG  G +EW + YS+KQF+ LFWRMRA++KKA+K   KQQ +FQYDP SYALNFDDG   
Sbjct: 1  MGLGGSLEWASAYSKKQFRSLFWRMRASVKKAVKNAGKQQLKFQYDPSSYALNFDDGCVH 60

Query: 61 FEAVASE-THAKFQASSNLNHSAMWVFVLLVKSE 94
              A+E  HAKFQ   ++  ++ WV+++ V+ E
Sbjct: 61 LGKGANELKHAKFQDFPDMGKTS-WVYIVWVRVE 93

[Close]

BLAST of CSPI06G34390 vs. TAIR 10
Match: AT1G11112.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-07
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 19 KKLFWRMRAAMKKAIKKGSKQQFRFQYDPCSYALNFDDGLCKFEAVASETHAKFQASSNL 78
          KK+F RM+AA+KK  K   K+Q  FQYDP SYALNFDDG+        E   +F    N 
Sbjct: 15 KKMFRRMKAAVKKTKK---KKQTMFQYDPWSYALNFDDGV--------ENPQRFSGDCNC 74

Query: 79 N-HSAMWVFVLLVK 92
            H    ++V+ VK
Sbjct: 75 KLHRITLIYVVSVK 77

The following BLAST results are available for this feature:

BLAST of CSPI06G34390 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G34390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GSN3	4.5e-19	53.47	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026626 PE=4 SV=1	[more]
A0A2C9U8B6	1.3e-18	53.26	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G023500 PE=4 SV=...	[more]
A0A2C9U5L8	3.8e-18	51.09	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G041400 PE=4 SV=...	[more]
A0A7J8MLK3	5.0e-18	53.26	Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_010486 PE=4 SV=1	[more]
A0A061GFJ8	6.6e-18	53.76	Glucose-fructose oxidoreductase domain-containing protein 2, putative OS=Theobro...	[more]

BLAST of CSPI06G34390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594620.1	7.7e-29	83.54	hypothetical protein SDJN03_11173, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3451534.1	3.4e-21	58.95	hypothetical protein FNV43_RR07629 [Rhamnella rubrinervis]	[more]
TXG47332.1	9.4e-19	53.47	hypothetical protein EZV62_026626 [Acer yangbiense]	[more]
OAY26128.1	2.7e-18	53.26	hypothetical protein MANES_16G023500v8 [Manihot esculenta]	[more]
KAG7958932.1	6.1e-18	52.13	hypothetical protein I3843_10G045200 [Carya illinoinensis]	[more]

BLAST of CSPI06G34390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11112.1	8.8e-07	44.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538	EXPRESSED PROTEIN	coord: 1..92
None	No IPR available	PANTHER	PTHR34538:SF10	OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2, PUTATIVE-RELATED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G34390.1	CSPI06G34390.1	mRNA