CSPI06G34180 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G34180
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LysM domain-containing protein
Location	Chr6: 28145976 .. 28146592 (+)
RNA-Seq Expression	CSPI06G34180
Synteny	CSPI06G34180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCTGTAGGTTTTCCTTAACCATTCATTCTAAAATATATATAATTTCATTATTTGTATGCTCTGTTTGGAATTATCGACTAATTACTTCAAAGAATAAGAAATCTTTGGCACTTGAAGAAGTCATTTCAATCTAAGATCGTTAATACATAGGAATCAATTATATTATTGATAAGTGATATGGAGGAAATAGTAGCTGTATCCAAGTCATTTTGAGTTGATTTGAAACGTATTCGGGTGATTTTCTTTCCATTTAAATTTATGTTGAAAGAGAAATAAGCATGTTGAGACTTATTGAAATTGTTGATTCTCATTTTGTGAGTTTGGAAATGCAGGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA

mRNA sequence

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCTGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA

Coding sequence (CDS)

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCTGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA

Protein sequence

MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT*

Homology

[Close]

BLAST of CSPI06G34180 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.4e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKGRNLF EVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

[Close]

BLAST of CSPI06G34180 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
            FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

[Close]

BLAST of CSPI06G34180 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MAKATI--SIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFA 60
          MAKA I  S  IFLLA SLLIF+ISV+ R+     VV EA LELQCNK YGVK+GDTCF 
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV-EAGLELQCNKVYGVKNGDTCFD 60

Query: 61 IAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
          + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 LEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

[Close]

BLAST of CSPI06G34180 vs. ExPASy TrEMBL
Match: A0A803NLT8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 44  CNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           CN  YGVK GDTCFA+ Q FKLTTD F  INPNLNC+ALFVSQWLCV+  L
Sbjct: 51  CNSVYGVKDGDTCFAVTQMFKLTTDFFTSINPNLNCAALFVSQWLCVDGTL 101

[Close]

BLAST of CSPI06G34180 vs. ExPASy TrEMBL
Match: A0A6J5X2L6 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24552 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 8  IAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTT 67
          I + L+ S LL+  ++ +G+ L   ++   A+  L+C  AYGVK+GDTCF IAQAF L T
Sbjct: 5  INLVLMLSLLLV--VASEGQFLANGILKPPAT--LKCESAYGVKTGDTCFEIAQAFNLPT 64

Query: 68 DHFDFINPNLNCSALFVSQWLCVNAFLT 96
          + FD INPNLNC+ALFV QW+C+N  L+
Sbjct: 65 ELFDSINPNLNCTALFVGQWVCLNGTLS 88

[Close]

BLAST of CSPI06G34180 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKGRNLF EVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

[Close]

BLAST of CSPI06G34180 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKG     EVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKG-----EVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 90

[Close]

BLAST of CSPI06G34180 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
            FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

[Close]

BLAST of CSPI06G34180 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 6.5e-23
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MAKATI--SIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFA 60
          MAKA I  S  IFLLA SLLIF+ISV+ R+     VV EA LELQCNK YGVK+GDTCF 
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV-EAGLELQCNKVYGVKNGDTCFD 60

Query: 61 IAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
          + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 LEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

[Close]

BLAST of CSPI06G34180 vs. NCBI nr
Match: KAG9449161.1 (hypothetical protein H6P81_009126 [Aristolochia fimbriata])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNIS-VKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAI 60
          MAKA++ + + +L  SL++F IS  +GR    +  + +A   L+CN A+GV+ GDTCF +
Sbjct: 1  MAKASLLLNL-VLVLSLVLFTISFAEGRLFHLDFGIGKADSTLECNSAHGVEEGDTCFDV 60

Query: 61 AQAFKLTTDHFDFINPNLNCSALFVSQWLCV 91
          A+AF LTT+ F+ +NPNLNC++LFV QWLCV
Sbjct: 61 AKAFNLTTEVFNEMNPNLNCTSLFVGQWLCV 90

The following BLAST results are available for this feature:

BLAST of CSPI06G34180 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G34180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLD2	9.4e-44	98.95	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S...	[more]
A0A1S4DTB4	9.7e-33	81.05	lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A0A0KHZ8	3.1e-23	65.63	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S...	[more]
A0A803NLT8	1.6e-14	74.51	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J5X2L6	7.7e-14	51.14	LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24...	[more]

BLAST of CSPI06G34180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49182.1	1.9e-43	98.95	hypothetical protein Csa_004378 [Cucumis sativus]	[more]
XP_031742455.1	1.7e-39	94.74	lysM domain-containing protein ARB_00327-like [Cucumis sativus]	[more]
XP_016899229.1	2.0e-32	81.05	PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]	[more]
KGN49183.1	6.5e-23	65.63	hypothetical protein Csa_003390 [Cucumis sativus]	[more]
KAG9449161.1	1.4e-14	49.45	hypothetical protein H6P81_009126 [Aristolochia fimbriata]	[more]

BLAST of CSPI06G34180 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 47..91 e-value: 6.4E-5 score: 32.3
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 48..90 e-value: 1.4E-6 score: 28.3
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 46..90 score: 12.776305
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 48..90 e-value: 3.83743E-7 score: 40.9317
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 44..90 e-value: 1.3E-16 score: 62.5
IPR036779	LysM domain superfamily	SUPERFAMILY	54106	LysM domain	coord: 44..90
None	No IPR available	PANTHER	PTHR34997:SF13	LYSM DOMAIN-CONTAINING PROTEIN-RELATED	coord: 2..94
None	No IPR available	PANTHER	PTHR34997	AM15	coord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G34180.1	CSPI06G34180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane