CSPI06G33620 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G33620
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LRR receptor-like serine/threonine-protein kinase GSO1-like
Location	Chr6: 27882418 .. 27882753 (+)
RNA-Seq Expression	CSPI06G33620
Synteny	CSPI06G33620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACTGTTGCAAAGCTCAATCCTCCACTCCGGTGATGGAAGGCAGCCATCGGAGGACTCCCCCGTTCAAGAACCACCCTCAGAGAAGGAACCAAGAAGGTAGTTCTAAAGAGACTAATTTGAGAGAGGTGAAAATAAGGATGACGAAGAAGGAGCTTCAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACAGGTTATGGCTCGCCTTGTGAATGTTATTGACTATCAAAATGGTGATAATAATAATGACCAAGTTGTGAAATTGCGTCAGCAACGTTCGTGGAGGCCTTCATTGCAAAGCATTCCTGAGATGATTTGA

mRNA sequence

ATGGGTAACTGTTGCAAAGCTCAATCCTCCACTCCGGTGATGGAAGGCAGCCATCGGAGGACTCCCCCGTTCAAGAACCACCCTCAGAGAAGGAACCAAGAAGGTAGTTCTAAAGAGACTAATTTGAGAGAGGTGAAAATAAGGATGACGAAGAAGGAGCTTCAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACAGGTTATGGCTCGCCTTGTGAATGTTATTGACTATCAAAATGGTGATAATAATAATGACCAAGTTGTGAAATTGCGTCAGCAACGTTCGTGGAGGCCTTCATTGCAAAGCATTCCTGAGATGATTTGA

Coding sequence (CDS)

ATGGGTAACTGTTGCAAAGCTCAATCCTCCACTCCGGTGATGGAAGGCAGCCATCGGAGGACTCCCCCGTTCAAGAACCACCCTCAGAGAAGGAACCAAGAAGGTAGTTCTAAAGAGACTAATTTGAGAGAGGTGAAAATAAGGATGACGAAGAAGGAGCTTCAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACAGGTTATGGCTCGCCTTGTGAATGTTATTGACTATCAAAATGGTGATAATAATAATGACCAAGTTGTGAAATTGCGTCAGCAACGTTCGTGGAGGCCTTCATTGCAAAGCATTCCTGAGATGATTTGA

Protein sequence

MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI*

Homology

[Close]

BLAST of CSPI06G33620 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.6e-53
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60
           MGNCCKAQSSTPVMEGSH  TPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60

Query: 61  LNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           LNMADSSFEQVMARLVNVI+YQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI
Sbjct: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of CSPI06G33620 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.2e-43
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGS---SKETNLREVKIRMTKKELQEL 60
           MGNCCK Q STPV   S RRTPP KNH QRR++EGS   SKETNLREVKIRMTKKEL+EL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           VGWLNMADSSFE VMARLVNVI+ QNGDNNNDQVVKLRQQRSWRPSLQSIPE+I
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CSPI06G33620 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.2e-43
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGS---SKETNLREVKIRMTKKELQEL 60
           MGNCCK Q STPV   S RRTPP KNH QRR++EGS   SKETNLREVKIRMTKKEL+EL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           VGWLNMADSSFE VMARLVNVI+ QNGDNNNDQVVKLRQQRSWRPSLQSIPE+I
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CSPI06G33620 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-34
Identity = 85/124 (68.55%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G  RR  P KN  QRR+  GS       SKE NLRE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+EL+GWLNMADSSFEQVMARLVNVI  QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CSPI06G33620 vs. ExPASy TrEMBL
Match: A0A5C7GRC2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026333 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 32  NQEGSSKETNLREVKIRMTKKELQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNNDQV 91
           +   ++ ++  REVKI++TKKEL+EL+G  ++   S EQV+A L+N  DY +   ++   
Sbjct: 61  SSSNNNNKSITREVKIKITKKELEELIGRADVQGLSVEQVLAELINGPDYHSDGQDHH-- 120

Query: 92  VKLRQQRSWRPSLQSIPEM 111
            KL  QRSWRP LQ+IPE+
Sbjct: 121 -KLHHQRSWRPVLQTIPEV 136

[Close]

BLAST of CSPI06G33620 vs. NCBI nr
Match: KGN49118.1 (hypothetical protein Csa_002843 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 5.4e-53
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60
           MGNCCKAQSSTPVMEGSH  TPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60

Query: 61  LNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           LNMADSSFEQVMARLVNVI+YQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI
Sbjct: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of CSPI06G33620 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 6.6e-43
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGS---SKETNLREVKIRMTKKELQEL 60
           MGNCCK Q STPV   S RRTPP KNH QRR++EGS   SKETNLREVKIRMTKKEL+EL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           VGWLNMADSSFE VMARLVNVI+ QNGDNNNDQVVKLRQQRSWRPSLQSIPE+I
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CSPI06G33620 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 154.1 bits (388), Expect = 7.3e-34
Identity = 85/124 (68.55%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G  RR  P KN  QRR+  GS       SKE NLRE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+EL+GWLNMADSSFEQVMARLVNVI  QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CSPI06G33620 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 4.7e-33
Identity = 84/124 (67.74%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G +RR  P KN  QRR+   S       SKE N+RE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+ELVGWLNMADSSFEQVMARLVNVI  QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CSPI06G33620 vs. NCBI nr
Match: KAG7033944.1 (hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 4.7e-33
Identity = 84/124 (67.74%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHRRTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G +RR  P KN  QRR+   S       SKE N+RE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+ELVGWLNMADSSFEQVMARLVNVI  QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CSPI06G33620 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 36  SSKETNLREVKIRMTKKELQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKL- 95
           SS  +  RE+KIR+TKKEL++L+  + +   + E+++++L+    ++ GD      V + 
Sbjct: 57  SSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLI----FEGGDQIGFSAVDVT 116

Query: 96  RQQRSWRPSLQSIPEM 111
              + W+P LQSIPEM
Sbjct: 117 NHHQPWKPVLQSIPEM 128

[Close]

BLAST of CSPI06G33620 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 44  EVKIRMTKKELQELVGWLNMADSSFEQVMARLVNVIDYQNGDNNNDQVVKLRQQRSWRPS 103
           E+KIR+TKK+L +L+  +N+ D +F+Q          +     NN    +  QQR WRP 
Sbjct: 56  EIKIRLTKKQLHDLLSKVNVHDLTFQQQ--------TFSCPILNNRGYEEANQQRLWRPV 114

Query: 104 LQSIPEM 111
           LQSIPE+
Sbjct: 116 LQSIPEV 114

The following BLAST results are available for this feature:

BLAST of CSPI06G33620 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G33620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHU7	2.6e-53	97.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A5D3CNX5	3.2e-43	84.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	3.2e-43	84.21	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A6J1IM02	3.5e-34	68.55	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A5C7GRC2	1.6e-07	44.30	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026333 PE=4 SV=1	[more]

BLAST of CSPI06G33620 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49118.1	5.4e-53	97.30	hypothetical protein Csa_002843 [Cucumis sativus]	[more]
XP_008441100.1	6.6e-43	84.21	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]
XP_022977330.1	7.3e-34	68.55	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
KAG6603773.1	4.7e-33	67.74	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033944.1	4.7e-33	67.74	hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI06G33620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	1.1e-06	35.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	2.0e-05	40.30	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..109
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G33620.1	CSPI06G33620.1	mRNA