CSPI06G27010 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G27010
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein of unknown function (DUF3511)
Location	Chr6: 23786201 .. 23786953 (+)
RNA-Seq Expression	CSPI06G27010
Synteny	CSPI06G27010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAGCTAACAATATCTACTAACAAAGAAACTTTGATATGATTTATACCCACACAAAGATTTCTGGTATCACGTATTTATAGGAGAGATGACAAACTTATGAACCATATCCAAAGTTTCTAATGATGGAGAGAAGCAAATCATTAAGTGGGTCTTACTCAAAAGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAATCCCAAATCATACAGCTTCAATGGAACAATCAAAAAGGAAGATGTGGCCAATCAAGAGCTCAAGAGAAGGCAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGAAAGCTGAAGAAGTCCTTAAGAAACAGCTTCAAGTGGATCAAGAACAAGATTTCCCACAGCTTTTATGATGATTGAGCTGAGACTTTTCCTTTTGTAAAACTATTTTTGTTTCTCTGTAAAATTTGTCCATCTCCTCATACTCAATGAAGAGGAGTGTTTCAAGCTGATAGAGACAACAAGGTTATGCAAACTTCTAAACTATATGTAATAACTTCAATTCGATGGCTATCTCTACATTAATCCCCAATCATAATTCATTATACAACTGAACAGTCACTAGAGCTAGCAGGGTTTTAATTTAGTAAAACATAATGTTATTTACCTAGCATGGGTGCAACAATCTTGTCATAAGCTCATGAGTTTCAAGGAATAATATAACATCATCAAATTTTGAATGATGCTTTGCTTCATAGACCAGAAAAATAGATGGCTTTCACATTCTTC

mRNA sequence

AAGAAAGCTAACAATATCTACTAACAAAGAAACTTTGATATGATTTATACCCACACAAAGATTTCTGGTATCACGTATTTATAGGAGAGATGACAAACTTATGAACCATATCCAAAGTTTCTAATGATGGAGAGAAGCAAATCATTAAGTGGGTCTTACTCAAAAGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAATCCCAAATCATACAGCTTCAATGGAACAATCAAAAAGGAAGATGTGGCCAATCAAGAGCTCAAGAGAAGGCAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGAAAGCTGAAGAAGTCCTTAAGAAACAGCTTCAAGTGGATCAAGAACAAGATTTCCCACAGCTTTTATGATGATTGAGCTGAGACTTTTCCTTTTGTAAAACTATTTTTGTTTCTCTGTAAAATTTGTCCATCTCCTCATACTCAATGAAGAGGAGTGTTTCAAGCTGATAGAGACAACAAGGTTATGCAAACTTCTAAACTATATGTAATAACTTCAATTCGATGGCTATCTCTACATTAATCCCCAATCATAATTCATTATACAACTGAACAGTCACTAGAGCTAGCAGGGTTTTAATTTAGTAAAACATAATGTTATTTACCTAGCATGGGTGCAACAATCTTGTCATAAGCTCATGAGTTTCAAGGAATAATATAACATCATCAAATTTTGAATGATGCTTTGCTTCATAGACCAGAAAAATAGATGGCTTTCACATTCTTC

Coding sequence (CDS)

ATGATGGAGAGAAGCAAATCATTAAGTGGGTCTTACTCAAAAGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAATCCCAAATCATACAGCTTCAATGGAACAATCAAAAAGGAAGATGTGGCCAATCAAGAGCTCAAGAGAAGGCAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGAAAGCTGAAGAAGTCCTTAAGAAACAGCTTCAAGTGGATCAAGAACAAGATTTCCCACAGCTTTTATGATGATTGA

Protein sequence

MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSMEGKLKKSLRNSFKWIKNKISHSFYDD*

Homology

[Close]

BLAST of CSPI06G27010 vs. ExPASy TrEMBL
Match: A0A0A0KFC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 60
          MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM
Sbjct: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 60

Query: 61 EGKLKKSLRNSFKWIKNKISHSFYDD 87
          EGKLKKSLRNSFKWIKNKISHSFYDD
Sbjct: 61 EGKLKKSLRNSFKWIKNKISHSFYDD 86

[Close]

BLAST of CSPI06G27010 vs. ExPASy TrEMBL
Match: A0A5D3CM35 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005800 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 60
          MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSF+GT+KKEDV NQELKRRQRVATYNMYSM
Sbjct: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSM 60

Query: 61 EGKLKKSLRNSFKWIKNKISHSFYD 86
          EGKLKKSLRNSFKWIKNKISHSFY+
Sbjct: 61 EGKLKKSLRNSFKWIKNKISHSFYN 85

[Close]

BLAST of CSPI06G27010 vs. ExPASy TrEMBL
Match: W9RA26 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006721 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.1e-22
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNG-TIKKED-----VANQELKRRQRVATY 61
          M+RSKSL G YS  YGD RFGFED  KSYSFNG +++ ED      +N E+KRR+RVA Y
Sbjct: 1  MDRSKSLPGHYSSLYGDARFGFEDRAKSYSFNGPSVRVEDHELGSSSNPEMKRRKRVANY 60

Query: 62 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 87
          NMY+MEGKLK SLRNSFKWIK+K   ++YD+
Sbjct: 61 NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDE 91

[Close]

BLAST of CSPI06G27010 vs. ExPASy TrEMBL
Match: A0A2P5BU01 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_308860 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 58/91 (63.74%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKK------EDVANQELKRRQRVATY 61
          MERSKSL G YS  YGD RFGFED  KSYSFNG   +          N E+KRR+RVA Y
Sbjct: 1  MERSKSLPGHYSSLYGDGRFGFEDRSKSYSFNGPSSQAADDEFASSGNPEMKRRKRVAAY 60

Query: 62 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 87
          NMY+MEGKLK SLRNSFKWIK+K   ++YDD
Sbjct: 61 NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDD 91

[Close]

BLAST of CSPI06G27010 vs. ExPASy TrEMBL
Match: A0A2P6RRL4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKED---------VANQELKRRQRV 61
          ME+SKS SG YS AY + RFGFED PKSYSFNG + K +          +N EL+RR+RV
Sbjct: 1  MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 62 ATYNMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 87
          A YNMY+MEGK K SLRNSFKWIK K   +FYD+
Sbjct: 61 ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

[Close]

BLAST of CSPI06G27010 vs. NCBI nr
Match: KAE8647476.1 (hypothetical protein Csa_003778 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 60
           MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM
Sbjct: 64  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 123

Query: 61  EGKLKKSLRNSFKWIKNKISHSFYDD 87
           EGKLKKSLRNSFKWIKNKISHSFYDD
Sbjct: 124 EGKLKKSLRNSFKWIKNKISHSFYDD 149

[Close]

BLAST of CSPI06G27010 vs. NCBI nr
Match: TYK12983.1 (hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 60
          MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSF+GT+KKEDV NQELKRRQRVATYNMYSM
Sbjct: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSM 60

Query: 61 EGKLKKSLRNSFKWIKNKISHSFYD 86
          EGKLKKSLRNSFKWIKNKISHSFY+
Sbjct: 61 EGKLKKSLRNSFKWIKNKISHSFYN 85

[Close]

BLAST of CSPI06G27010 vs. NCBI nr
Match: EXB64484.1 (hypothetical protein L484_006721 [Morus notabilis])

HSP 1 Score: 113.6 bits (283), Expect = 8.5e-22
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNG-TIKKED-----VANQELKRRQRVATY 61
          M+RSKSL G YS  YGD RFGFED  KSYSFNG +++ ED      +N E+KRR+RVA Y
Sbjct: 1  MDRSKSLPGHYSSLYGDARFGFEDRAKSYSFNGPSVRVEDHELGSSSNPEMKRRKRVANY 60

Query: 62 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 87
          NMY+MEGKLK SLRNSFKWIK+K   ++YD+
Sbjct: 61 NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDE 91

[Close]

BLAST of CSPI06G27010 vs. NCBI nr
Match: PON52269.1 (hypothetical protein TorRG33x02_308860 [Trema orientale])

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 58/91 (63.74%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKK------EDVANQELKRRQRVATY 61
          MERSKSL G YS  YGD RFGFED  KSYSFNG   +          N E+KRR+RVA Y
Sbjct: 1  MERSKSLPGHYSSLYGDGRFGFEDRSKSYSFNGPSSQAADDEFASSGNPEMKRRKRVAAY 60

Query: 62 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 87
          NMY+MEGKLK SLRNSFKWIK+K   ++YDD
Sbjct: 61 NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDD 91

[Close]

BLAST of CSPI06G27010 vs. NCBI nr
Match: PRQ49076.1 (hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis])

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-21
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKED---------VANQELKRRQRV 61
          ME+SKS SG YS AY + RFGFED PKSYSFNG + K +          +N EL+RR+RV
Sbjct: 1  MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 62 ATYNMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 87
          A YNMY+MEGK K SLRNSFKWIK K   +FYD+
Sbjct: 61 ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

[Close]

BLAST of CSPI06G27010 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1  MMERSKSLSGSYSKAYGDVRFGFEDN-PKSYSFNGTIKKEDVANQELKRRQRVATYNMYS 60
          MM+ SKS +  YS ++    FG++ N   SY+FNG     D    E+KR++RVA+YN+++
Sbjct: 1  MMKGSKSYT-EYSSSFSTDEFGYDQNRSNSYNFNGPCINTD---PEMKRKKRVASYNLFA 60

Query: 61 MEGKLKKSLRNSFKWIKNKIS 81
           E KLK +L+NSFKWIKNK S
Sbjct: 61 TEEKLKSTLKNSFKWIKNKFS 77

[Close]

BLAST of CSPI06G27010 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-08
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 11  SYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSMEGKLKKSLRN 70
           SYS +YG       D  K  S     K   + + EL+R++RVA+Y MY +EGK+K S RN
Sbjct: 30  SYSASYGTRENNIYDVKKEKSI-ARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRN 89

Query: 71  SFKWIKNKISHSFY 85
           SF+W+K + +   Y
Sbjct: 90  SFRWLKQRYTQVVY 102

[Close]

BLAST of CSPI06G27010 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.4 bits (119), Expect = 8.2e-07
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 6   KSLSGSYSKAYGDVRFGFED-NPKSYSFNGTIKK--EDVANQELKRRQRVATYNMYSMEG 65
           +S S S   AY +     +D N KS   N   KK  + +   E++R++RVA+YN+Y +EG
Sbjct: 43  RSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEG 102

Query: 66  KLKKSLRNSFKWIKNKISHSFY 85
           ++K S++ SFKW K   S++ Y
Sbjct: 103 RVKGSMKKSFKWFKETCSNAVY 124

[Close]

BLAST of CSPI06G27010 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 41  VANQELKRRQRVATYNMYSMEGKLKKSLRNSFKWIKNK---ISHSF 84
           +++ E+KR++R+A Y  Y++EGK+K +L+N F+WIKNK   I H F
Sbjct: 65  LSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of CSPI06G27010 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 11  SYSKAYGD--VRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSMEGKLKKSL 70
           SYS +Y D   R   + NPK    + +       + +L+R++RV +Y  Y++EGKLK S 
Sbjct: 42  SYSTSYTDYPTRIPEDQNPKK-GRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSF 101

Query: 71  RNSFKWIKNK 79
           R SFKWIK+K
Sbjct: 102 RKSFKWIKDK 110

The following BLAST results are available for this feature:

BLAST of CSPI06G27010 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G27010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFC2	2.6e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1	[more]
A0A5D3CM35	7.0e-38	95.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
W9RA26	4.1e-22	63.74	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006721 PE=4 SV=1	[more]
A0A2P5BU01	1.2e-21	63.74	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_308860 PE=4 SV...	[more]
A0A2P6RRL4	1.6e-21	60.64	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4...	[more]

BLAST of CSPI06G27010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647476.1	5.3e-40	100.00	hypothetical protein Csa_003778 [Cucumis sativus]	[more]
TYK12983.1	1.4e-37	95.29	hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa]	[more]
EXB64484.1	8.5e-22	63.74	hypothetical protein L484_006721 [Morus notabilis]	[more]
PON52269.1	2.5e-21	63.74	hypothetical protein TorRG33x02_308860 [Trema orientale]	[more]
PRQ49076.1	3.2e-21	60.64	hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis]	[more]

BLAST of CSPI06G27010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09890.1	1.3e-12	48.15	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	2.6e-08	40.54	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	8.2e-07	37.80	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	1.1e-06	47.83	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.4e-06	41.43	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..83 e-value: 2.2E-21 score: 75.4
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 2..81
None	No IPR available	PANTHER	PTHR33193:SF41	SUBFAMILY NOT NAMED	coord: 2..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G27010.1	CSPI06G27010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0004518	nuclease activity