CSPI06G24230 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G24230
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-binding protein S1FA
Location	Chr6: 21737742 .. 21739530 (-)
RNA-Seq Expression	CSPI06G24230
Synteny	CSPI06G24230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTTGAAACCCCCATGGGCGGAAATACCGTAAATCCACTGATTATCCGCCATTTTCATATCTTCGTTCCTTTTGTATTTTTTCTCGAAGCTTCGTCAGTTCATCGTTTTGGTACATAACTACAACACACCAGCTCTCTCCCATTCTCAATTTCAGCCATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGTACTCGTAACCTCCCTTTACAGTATCACCTTCTCATTTCCTTTCTTCTCTGTTCATCTCCTAAGTCGAGATCTCTTTTAATGCTCCTTTCCCCTCTCTTGTTTTTACCTCGAGCTTTGGATTTCGACTTGGTTCTATGTGTTTACTTTGATAGTTTTACCTATAATTGTCGAGGTTTTGCTGTTCTGATTTGCTCTCATTTTTTGAATTTCGTTCTTGAGGTCTGATTGTCTCTGCAATTGAATGTCGCAAATAATTCAGTTGAATTTTGTAGGGATCTGCTCTCCAAGTACCATTATAAAAATGCTTTTGGTAAATGAGTGTTCTGTTTCTTATATACATACTTTTCTCGGTACTTGACTTGTATTCTTATTTGTTTGTTCATATTTTGGAATCGAAGATCTATTTTCATGAAGAATAAAGCTGTTTTTTTTTCCTTAAAGAGGTTTTAATGATGATCAGGATGCATGTGATCAGTGGGTTCTTTGTAGAATGAGAAAGAATTCAAAAATTGTGCACATTTTTGCAATTTCCTCAACATGGACTGAAATTTGCTACTATGGGTTGGGTTATTACACGAATTTGTTGATTCGATTCTACACTAGACCGAAATTGAAATTGAAGAATGGTTGTTAATTTATCCTTTCCCTGATCTGTTCGATACTGTTAGAGGATGTTCCATGCATCTTTGATATTGTATCCTCAGTATCCTTCATAGCTGAGAATCAGATTAATGGTGAGTAGGAATAAGGCTACAATTTATCTCCTTTTCGTGTTTTGAAGCTACCCTTACACTTGTGACTTGTGAGTATTCTTCGTATCCTTGTGGAATAATCATGAGAGGAAAATTCTCTTAATCTGATACAATAACAAGACAGAAATAAGACATTAAACATCAGATATTTGTTTATTGTTTTAGGGTAGGGATTGAAATCTCTGAACTTTTGGTTCAACATATGTCTAAACTCGACACGTGCTGTTAAGACTTAAGTCTCCATGCATGCGACTGCTGACAAGACAATCAACTTTCTTTCCGGGCTTTACACCTTCTACAATTCTTTCCTTGTTGTATATGTTAAAGTGGTTCATGTAATGAGCAGTTAATATTGGGCTTGGTTCACAGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAGAAGTGTAGTGGTAGACTTCTCTTATGTTTTGTATGCCTGTCCTTGATTTGGTTGAACTAACAAGTTCTACCAAATGAATTTCAATGTTTGAAGAGTTGTTTTGCCTATGTTGTTAAGTTGGTTAGAATCTGAACATATAAGTAGAAGTTTATTGTCGCTTTGTATCCTTAGAGATGAGAAATAATAACAACATAGTTTATGTGGTATATTTTGATCAAATGCTAACCTTTTGGTGCCC

mRNA sequence

CGTTTGAAACCCCCATGGGCGGAAATACCGTAAATCCACTGATTATCCGCCATTTTCATATCTTCGTTCCTTTTGTATTTTTTCTCGAAGCTTCGTCAGTTCATCGTTTTGGTACATAACTACAACACACCAGCTCTCTCCCATTCTCAATTTCAGCCATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAGAAGTGTAGTGGTAGACTTCTCTTATGTTTTGTATGCCTGTCCTTGATTTGGTTGAACTAACAAGTTCTACCAAATGAATTTCAATGTTTGAAGAGTTGTTTTGCCTATGTTGTTAAGTTGGTTAGAATCTGAACATATAAGTAGAAGTTTATTGTCGCTTTGTATCCTTAGAGATGAGAAATAATAACAACATAGTTTATGTGGTATATTTTGATCAAATGCTAACCTTTTGGTGCCC

Coding sequence (CDS)

ATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAG

Protein sequence

MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE*

Homology

[Close]

BLAST of CSPI06G24230 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-22
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 22 IRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLK 81
          + + EA+G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 82 QGVSAPGE 90
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of CSPI06G24230 vs. ExPASy Swiss-Prot
Match: P42553 (DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-21
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 16 NRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKM 75
          ++  N+I +   +G NPG IVLLVV  LL  F VGNYALYMYAQKTLPP+KKKPVSKKK+
Sbjct: 3  DQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKL 62

Query: 76 KRERLKQGVSAPGE 90
          KRE+LKQGVSAPGE
Sbjct: 63 KREKLKQGVSAPGE 76

[Close]

BLAST of CSPI06G24230 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-21
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 20 NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRER 79
          NV+ +   +G NPG+IVL+VV   L  F VGNYALY+YAQKTLPP+KKKPVSKKKMKRE+
Sbjct: 11 NVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREK 70

Query: 80 LKQGVSAPGE 90
          LKQGVSAPGE
Sbjct: 71 LKQGVSAPGE 80

[Close]

BLAST of CSPI06G24230 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 7.7e-21
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          EA+G NPGLIVLLV+GGLL  FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CSPI06G24230 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-20
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQGV 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQ 69

Query: 86 APGE 90
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of CSPI06G24230 vs. ExPASy TrEMBL
Match: A0A0A0KEM3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.1e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. ExPASy TrEMBL
Match: A0A5A7TZ88 (DNA-binding protein S1FA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00690 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. ExPASy TrEMBL
Match: A0A1S3BLN5 (DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103491199 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. ExPASy TrEMBL
Match: A0A6J1HDT2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPK+KKPVSKKKMKRERLKQG+SAPGE
Sbjct: 61 TLPPKRKKPVSKKKMKRERLKQGISAPGE 89

[Close]

BLAST of CSPI06G24230 vs. ExPASy TrEMBL
Match: A0A6J1I6D0 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111471126 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRD +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQ 
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDSDARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQN 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLP K+KKPVSKKKMKRERLKQG+SAPGE
Sbjct: 61 TLPQKRKKPVSKKKMKRERLKQGISAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: XP_004143239.1 (DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_003029 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 8.4e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: XP_008449267.1 (PREDICTED: DNA-binding protein S1FA-like [Cucumis melo] >KAA0047276.1 DNA-binding protein S1FA-like [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMRNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQGVSAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: XP_038881351.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRD +ARGFNPGLIVLLVVGGLL AFL GNYALYMYAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDADARGFNPGLIVLLVVGGLLLAFLAGNYALYMYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPKKKKPVSKKKMKRERLKQG+SAPGE
Sbjct: 61 TLPPKKKKPVSKKKMKRERLKQGISAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: XP_022962636.1 (DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding protein S1FA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 3.3e-37
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQK
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQK 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLPPK+KKPVSKKKMKRERLKQG+SAPGE
Sbjct: 61 TLPPKRKKPVSKKKMKRERLKQGISAPGE 89

[Close]

BLAST of CSPI06G24230 vs. NCBI nr
Match: XP_022972581.1 (DNA-binding protein S1FA-like [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQK 60
          MEDDFDFGDKVPPAVNRMGNVIRD +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQ 
Sbjct: 1  MEDDFDFGDKVPPAVNRMGNVIRDSDARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQN 60

Query: 61 TLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          TLP K+KKPVSKKKMKRERLKQG+SAPGE
Sbjct: 61 TLPQKRKKPVSKKKMKRERLKQGISAPGE 89

[Close]

BLAST of CSPI06G24230 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-22
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          EA+G NPGLIVLLV+GGLL  FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CSPI06G24230 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 100.1 bits (248), Expect = 9.3e-22
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQGV 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQ 69

Query: 86 APGE 90
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of CSPI06G24230 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 26 EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVS 85
          EA+G NPGLIVLLVVGG L  FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVP 72

Query: 86 APGE 90
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of CSPI06G24230 vs. TAIR 10
Match: AT3G53370.2 (S1FA-like DNA-binding protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 57 YAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
          +A K LPP+KKKPVSKKK+KRE+LKQGV  PGE
Sbjct: 6  FAGKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 38

The following BLAST results are available for this feature:

BLAST of CSPI06G24230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	2.4e-22	76.47	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
P42553	2.0e-21	71.62	DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3...	[more]
Q7XLX6	4.5e-21	72.86	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]
Q42337	7.7e-21	75.00	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]
Q93VI0	1.3e-20	75.00	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]

BLAST of CSPI06G24230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEM3	4.1e-41	100.00	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1	[more]
A0A5A7TZ88	3.5e-40	98.88	DNA-binding protein S1FA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BLN5	3.5e-40	98.88	DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103491199 PE=3 SV=1	[more]
A0A6J1HDT2	1.6e-37	91.01	DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3...	[more]
A0A6J1I6D0	1.8e-36	89.89	DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111471126 PE=3 S...	[more]

BLAST of CSPI06G24230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143239.1	8.4e-41	100.00	DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_...	[more]
XP_008449267.1	7.1e-40	98.88	PREDICTED: DNA-binding protein S1FA-like [Cucumis melo] >KAA0047276.1 DNA-bindin...	[more]
XP_038881351.1	1.8e-38	94.38	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
XP_022962636.1	3.3e-37	91.01	DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding p...	[more]
XP_022972581.1	3.7e-36	89.89	DNA-binding protein S1FA-like [Cucurbita maxima]	[more]

BLAST of CSPI06G24230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37120.1	5.5e-22	75.00	S1FA-like DNA-binding protein	[more]
AT3G09735.1	9.3e-22	75.00	S1FA-like DNA-binding protein	[more]
AT3G53370.1	1.6e-21	76.56	S1FA-like DNA-binding protein	[more]
AT3G53370.2	2.2e-07	75.76	S1FA-like DNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 26..89 e-value: 1.6E-40 score: 137.1
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 3..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 3..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G24230.1	CSPI06G24230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding