CSPI06G22540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G22540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type domain-containing protein
Location	Chr6: 20404534 .. 20405508 (+)
RNA-Seq Expression	CSPI06G22540
Synteny	CSPI06G22540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCTTTTCTTATTTCTTCACCAAGAAATTTCATATCCTTTTTTAATAATCTTCTCTTTCACACACCAATCATCAAAATTCAAAACCCAAACTTCATACATACTTTCCTTTTCCAATTCTTTGTTAAAAAAAATCTCACTATATTACCATTAAAATCCTCAAAATCCCACAAAGAAATTCATCTTTTCCTCTATCTCACTTCTTTCTCCATCTCACTTAAAACAAGAGGCCATGTCCTCCCCCACTAATCCCTCTTTCGACGGCGACGATATATACTTCGGCCCCGCCCATCCCCATCGCAACCCATATGATTTAAACAACAAAATCATGCTCACCGCCATCGTTTCCCTTTCTCTCGTCGTCATTCTCGTCATTGCCCTTCACATTTACGGCCGTTATGCCCTCCGCCGCCACGCACGGCGTCAGGCCGTCCTACGTCGTCTCGGAATCCTCGCCTTCATCGACTCCGGCGACCATCACCCGCCACCGTCTCGCTCCGGGCTCGACCCCTTAGTCATGGCGTCGATGCCGGTCGTCGTTTTCAAGCACCAATTGGAAAGTCCAGACCCCTCCGGTGGCGGCGTGGAGTGTGCCGTGTGCTTGAGCGCTATCGTGGACGGCGAGACGGCGAGAATTTTGCCCAATTGTAAACATGTGTTTCATGTGGAGTGTATTGATAAATGGTTTGGGTCTCATTCCACATGTCCGATTTGTCGGACGGAGGCGGCGCCGATGATGCTGCCAGAACCTCGGGAAGGTCCGGCGGCAGAGGTGGGGGAGGGTGGTGGGTCAACCTCCCGATTGAGTTCGTTCAGACGGATTCTAAGTAGAGAAAGGTCTTCGCTAAGGATTCAACCTTGTGTACTCCAACATAGAAACGACGCCGTTCCAGACTTGGAATCCCAGTAAATATCAATTAATGTAAAAAACTATTTTTAACTTTTATTTATTTTTATTCACTTAATATTTTTTTCC

mRNA sequence

GCTCTTTTCTTATTTCTTCACCAAGAAATTTCATATCCTTTTTTAATAATCTTCTCTTTCACACACCAATCATCAAAATTCAAAACCCAAACTTCATACATACTTTCCTTTTCCAATTCTTTGTTAAAAAAAATCTCACTATATTACCATTAAAATCCTCAAAATCCCACAAAGAAATTCATCTTTTCCTCTATCTCACTTCTTTCTCCATCTCACTTAAAACAAGAGGCCATGTCCTCCCCCACTAATCCCTCTTTCGACGGCGACGATATATACTTCGGCCCCGCCCATCCCCATCGCAACCCATATGATTTAAACAACAAAATCATGCTCACCGCCATCGTTTCCCTTTCTCTCGTCGTCATTCTCGTCATTGCCCTTCACATTTACGGCCGTTATGCCCTCCGCCGCCACGCACGGCGTCAGGCCGTCCTACGTCGTCTCGGAATCCTCGCCTTCATCGACTCCGGCGACCATCACCCGCCACCGTCTCGCTCCGGGCTCGACCCCTTAGTCATGGCGTCGATGCCGGTCGTCGTTTTCAAGCACCAATTGGAAAGTCCAGACCCCTCCGGTGGCGGCGTGGAGTGTGCCGTGTGCTTGAGCGCTATCGTGGACGGCGAGACGGCGAGAATTTTGCCCAATTGTAAACATGTGTTTCATGTGGAGTGTATTGATAAATGGTTTGGGTCTCATTCCACATGTCCGATTTGTCGGACGGAGGCGGCGCCGATGATGCTGCCAGAACCTCGGGAAGGTCCGGCGGCAGAGGTGGGGGAGGGTGGTGGGTCAACCTCCCGATTGAGTTCGTTCAGACGGATTCTAAGTAGAGAAAGGTCTTCGCTAAGGATTCAACCTTGTGTACTCCAACATAGAAACGACGCCGTTCCAGACTTGGAATCCCAGTAAATATCAATTAATGTAAAAAACTATTTTTAACTTTTATTTATTTTTATTCACTTAATATTTTTTTCC

Coding sequence (CDS)

ATGTCCTCCCCCACTAATCCCTCTTTCGACGGCGACGATATATACTTCGGCCCCGCCCATCCCCATCGCAACCCATATGATTTAAACAACAAAATCATGCTCACCGCCATCGTTTCCCTTTCTCTCGTCGTCATTCTCGTCATTGCCCTTCACATTTACGGCCGTTATGCCCTCCGCCGCCACGCACGGCGTCAGGCCGTCCTACGTCGTCTCGGAATCCTCGCCTTCATCGACTCCGGCGACCATCACCCGCCACCGTCTCGCTCCGGGCTCGACCCCTTAGTCATGGCGTCGATGCCGGTCGTCGTTTTCAAGCACCAATTGGAAAGTCCAGACCCCTCCGGTGGCGGCGTGGAGTGTGCCGTGTGCTTGAGCGCTATCGTGGACGGCGAGACGGCGAGAATTTTGCCCAATTGTAAACATGTGTTTCATGTGGAGTGTATTGATAAATGGTTTGGGTCTCATTCCACATGTCCGATTTGTCGGACGGAGGCGGCGCCGATGATGCTGCCAGAACCTCGGGAAGGTCCGGCGGCAGAGGTGGGGGAGGGTGGTGGGTCAACCTCCCGATTGAGTTCGTTCAGACGGATTCTAAGTAGAGAAAGGTCTTCGCTAAGGATTCAACCTTGTGTACTCCAACATAGAAACGACGCCGTTCCAGACTTGGAATCCCAGTAA

Protein sequence

MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVECAVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAEVGEGGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ*

Homology

[Close]

BLAST of CSPI06G22540 vs. ExPASy Swiss-Prot
Match: Q9SLC3 (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-35
Identity = 102/247 (41.30%), Postives = 132/247 (53.44%), Query Frame = 0


Query: 8   SFDGDDIYFGPAH----PHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHAR 67
           S D D   F   H    P+ + YDLN+KIML A+ SLS V+++V ALH+Y R+ LR   R
Sbjct: 3   SNDRDHRRFNSDHHSFWPNPSTYDLNSKIMLAAVASLSGVILIVFALHLYARFVLR---R 62

Query: 68  RQAVLRRLGILAFIDSGDHHP-PPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVECAV 127
           R+   R L ++        HP    + GL+P V+AS+P         +   +    ECAV
Sbjct: 63  RREAFRGLPVIF------RHPFEMPKRGLNPTVIASLPTFTVG---ATDGVAASATECAV 122

Query: 128 CLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEA--APMMLPEPREGP--- 187
           CLS + + + AR LPNCKH+FHV+C+D W  + STCP+CRTE    P + PEPREGP   
Sbjct: 123 CLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEPEPREGPVGT 182

Query: 188 ---------------AAEVGEGGGST-----SRLSSFRRILSRERSSLRI-QPCVLQHRN 224
                          AA        T     SRL+SFR+IL+RERSS RI   C  Q   
Sbjct: 183 APQLLVETRLNLTVEAASSSSSDNKTVVSPASRLNSFRKILTRERSSNRINHSCPDQ--- 234

[Close]

BLAST of CSPI06G22540 vs. ExPASy Swiss-Prot
Match: Q9SLC4 (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.7e-35
Identity = 93/221 (42.08%), Postives = 121/221 (54.75%), Query Frame = 0


Query: 3   SPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHA 62
           S  N + D DD  F     +   YD ++KI L   VS S+++I+V   ++Y ++ L R +
Sbjct: 2   SSNNKTDDSDDRSF---WQNSTSYDASSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRS 61

Query: 63  RRQAVLRRLGILAFID-SGDHHPPPSRSGLDPLVMASMP--VVVFKHQLESPDPSGGGVE 122
                       AF D S      P + GLD LV+AS+P  VV  K+ +        G E
Sbjct: 62  ------------AFQDLSFSVVSQPPKRGLDSLVIASLPTFVVGIKNDV-------AGTE 121

Query: 123 CAVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAA---PMMLPEPREG 182
           CAVCLS + + + AR+LPNCKHVFHV C+D W  + STCP+CRTEA    P + PEPREG
Sbjct: 122 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREG 181

Query: 183 PAAEVG-----------EGGGSTSRLSSFRRILSRERSSLR 207
           P  +              GG S SRL SFRRIL+RERSS R
Sbjct: 182 PVGDFAPPLDFAGVDNKTGGSSVSRLDSFRRILTRERSSNR 200

[Close]

BLAST of CSPI06G22540 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-28
Identity = 75/165 (45.45%), Postives = 98/165 (59.39%), Query Frame = 0


Query: 8   SFDGDDIYFGPAHPH---RNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRY----ALRR 67
           S D D I F P   +      Y ++ KIML+AIV L  VVIL++ LH+Y R+    A RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 68  HARRQAVLRRLGILAFI--DSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGV 127
           H RR++  RR  ++ F    S       +  GLDP V+ S+PV  F  +    DP    +
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHK-DP----I 122

Query: 128 ECAVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRT 164
           ECAVCLS   + ET R+LPNC+H FHV+CID WF SHSTCP+CR+
Sbjct: 123 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of CSPI06G22540 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-24
Identity = 66/172 (38.37%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 9   FDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHARRQAVL 68
           FD     +G  +   + Y LN KIML +++ L + VIL++  H Y R+  RR  RR  + 
Sbjct: 5   FDSSKTLWGNMNHGSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRR--IR 64

Query: 69  RRLGILAFIDSGDHHPPPSRSG---LDPLVMASMPVVVFKHQL-ESPDPSGGGVECAVCL 128
           RR+       +    P  S S    LDP V+  +P+ V+  +  ESP       EC+VCL
Sbjct: 65  RRISAHLRSLAAARDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-----ECSVCL 124

Query: 129 SAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRT---EAAPMMLPEP 174
           S   + +  R+LP C HVFHV+CID WF S S+CP+CR     A P+  PEP
Sbjct: 125 SEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEP 169

[Close]

BLAST of CSPI06G22540 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-22
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 0


Query: 26  YDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHARRQAVLRRLGILAFIDSGDHHPP 85
           Y LN KIML++++ L + VI+++  H Y R+  RRH RR  + RR+       S      
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRR--IRRRIRSHLRTLSAS---- 81

Query: 86  PSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVECAVCLSAIVDGETARILPNCKHVFHV 145
           P    LD  V+  +P+ V+    ++P P     EC+VCLS   + +  R+LP C H FHV
Sbjct: 82  PRDQALDQAVLDKIPIFVYSS--KNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHV 141

Query: 146 ECIDKWFGSHSTCPICRTEAAP 168
           +CID WF S STCP+CR    P
Sbjct: 142 DCIDTWFRSRSTCPLCRAPVQP 155

[Close]

BLAST of CSPI06G22540 vs. ExPASy TrEMBL
Match: A0A0A0KJL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G420520 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 7.4e-124
Identity = 223/229 (97.38%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRR 60
           MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIY RYALRR
Sbjct: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVEC 120
           HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQ ESPDPSGGGVEC
Sbjct: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQSESPDPSGGGVEC 120

Query: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180
           AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VGE----GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           VGE    GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ
Sbjct: 181 VGEGGGGGGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 229

[Close]

BLAST of CSPI06G22540 vs. ExPASy TrEMBL
Match: A0A5A7V7D1 (RING-H2 finger protein ATL40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00200 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 206/226 (91.15%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRR 60
           MSS  NPSFD  DIYFGP+HPHRNPYDLNNKIMLTAI+SLSLVV+LVIALHIY RYALRR
Sbjct: 1   MSSSANPSFDDGDIYFGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVEC 120
           HARRQAVLRRLGILA +DS D H PPSRSGLDPLVMASMPVVVFKHQ E+P+PSGG VEC
Sbjct: 61  HARRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVEC 120

Query: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180
           AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VGE-GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           VGE GGGS+SRLSSFRRILSRERSSLRIQPCV QHRNDAVPDLESQ
Sbjct: 181 VGESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

[Close]

BLAST of CSPI06G22540 vs. ExPASy TrEMBL
Match: A0A1S4DXK5 (RING-H2 finger protein ATL40-like OS=Cucumis melo OX=3656 GN=LOC103491347 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 206/226 (91.15%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRR 60
           MSS  NPSFD  DIYFGP+HPHRNPYDLNNKIMLTAI+SLSLVV+LVIALHIY RYALRR
Sbjct: 1   MSSSANPSFDDGDIYFGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVEC 120
           HARRQAVLRRLGILA +DS D H PPSRSGLDPLVMASMPVVVFKHQ E+P+PSGG VEC
Sbjct: 61  HARRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVEC 120

Query: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180
           AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VGE-GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           VGE GGGS+SRLSSFRRILSRERSSLRIQPCV QHRNDAVPDLESQ
Sbjct: 181 VGESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

[Close]

BLAST of CSPI06G22540 vs. ExPASy TrEMBL
Match: G4V490 (Putative ring zinc finger protein (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.3e-99
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRR 60
           MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIY RYALRR
Sbjct: 27  MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYARYALRR 86

Query: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVEC 120
           HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQ ESPDPSGGGVEC
Sbjct: 87  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQSESPDPSGGGVEC 146

Query: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAA 180
           AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAA
Sbjct: 147 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAA 205

[Close]

BLAST of CSPI06G22540 vs. ExPASy TrEMBL
Match: A0A6J1ESR2 (RING-H2 finger protein ATL40-like OS=Cucurbita moschata OX=3662 GN=LOC111437227 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.3e-83
Identity = 164/219 (74.89%), Postives = 179/219 (81.74%), Query Frame = 0


Query: 8   SFDGDDIYFGPAH-PHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHARRQA 67
           SFD  D  F   H P+RNPY+LNN+IMLTAI+SLSLVV+LVIALHIY RYALRRHARRQA
Sbjct: 5   SFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 64

Query: 68  VLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVECAVCLSA 127
           VLRRLGILA +DS D   PP  SGLDPLVMAS+PVVVFKHQLE+P      VECAVCL A
Sbjct: 65  VLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAVCLCA 124

Query: 128 IVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAEVGEGGG 187
           + DGE AR+LPNCKH FH+ECIDKWFG HSTCP CRTEAAPM+ PEPRE P AE   GGG
Sbjct: 125 VEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAPVAE--SGGG 184

Query: 188 STSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           S+SRLSSFRRILSRERSS RIQPCV ++ ND V DLE Q
Sbjct: 185 SSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

[Close]

BLAST of CSPI06G22540 vs. NCBI nr
Match: XP_031744153.1 (RING-H2 finger protein ATL40 [Cucumis sativus] >KGN47956.1 hypothetical protein Csa_003069 [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 1.5e-123
Identity = 223/229 (97.38%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRR 60
           MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIY RYALRR
Sbjct: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVEC 120
           HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQ ESPDPSGGGVEC
Sbjct: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQSESPDPSGGGVEC 120

Query: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180
           AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VGE----GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           VGE    GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ
Sbjct: 181 VGEGGGGGGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 229

[Close]

BLAST of CSPI06G22540 vs. NCBI nr
Match: XP_016900708.1 (PREDICTED: RING-H2 finger protein ATL40-like [Cucumis melo] >KAA0061641.1 RING-H2 finger protein ATL40-like [Cucumis melo var. makuwa] >TYK05865.1 RING-H2 finger protein ATL40-like [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 8.4e-114
Identity = 206/226 (91.15%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRR 60
           MSS  NPSFD  DIYFGP+HPHRNPYDLNNKIMLTAI+SLSLVV+LVIALHIY RYALRR
Sbjct: 1   MSSSANPSFDDGDIYFGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVEC 120
           HARRQAVLRRLGILA +DS D H PPSRSGLDPLVMASMPVVVFKHQ E+P+PSGG VEC
Sbjct: 61  HARRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVEC 120

Query: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180
           AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VGE-GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           VGE GGGS+SRLSSFRRILSRERSSLRIQPCV QHRNDAVPDLESQ
Sbjct: 181 VGESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

[Close]

BLAST of CSPI06G22540 vs. NCBI nr
Match: XP_038877602.1 (RING-H2 finger protein ATL40-like [Benincasa hispida])

HSP 1 Score: 384.0 bits (985), Expect = 8.7e-103
Identity = 193/228 (84.65%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 1   MSSPTNPSFDGDD--IYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYAL 60
           MSS  NPSFD  D  I+FGPAHPHRNPYDLNNKIMLTAI+SLSLVV+LVIALHIY RYAL
Sbjct: 1   MSSSANPSFDDGDGYIFFGPAHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYAL 60

Query: 61  RRHARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGV 120
           RR ARRQAVLRRLGILA +DSGD   PPSRSGLDPLVMASMPV+VFKHQ E+PDPSG  V
Sbjct: 61  RRQARRQAVLRRLGILALVDSGDPPLPPSRSGLDPLVMASMPVIVFKHQSENPDPSGAAV 120

Query: 121 ECAVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPA 180
           ECAVCLS I DGETARILPNCKHVFH+ECIDKWFGSHSTCPICRTEAAPM+LPEPRE PA
Sbjct: 121 ECAVCLSGIEDGETARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPMILPEPREAPA 180

Query: 181 AEVGE-GGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           A V E GGGS+SRLSSFRRILSRERSS RIQPCV Q RND V DLESQ
Sbjct: 181 AAVAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQSRNDDVQDLESQ 228

[Close]

BLAST of CSPI06G22540 vs. NCBI nr
Match: AEP25855.1 (putative ring zinc finger protein, partial [Cucumis sativus])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRR 60
           MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIY RYALRR
Sbjct: 27  MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYARYALRR 86

Query: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVEC 120
           HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQ ESPDPSGGGVEC
Sbjct: 87  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQSESPDPSGGGVEC 146

Query: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAA 180
           AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAA
Sbjct: 147 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAA 205

[Close]

BLAST of CSPI06G22540 vs. NCBI nr
Match: XP_022930874.1 (RING-H2 finger protein ATL40-like [Cucurbita moschata])

HSP 1 Score: 319.3 bits (817), Expect = 2.6e-83
Identity = 164/219 (74.89%), Postives = 179/219 (81.74%), Query Frame = 0


Query: 8   SFDGDDIYFGPAH-PHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHARRQA 67
           SFD  D  F   H P+RNPY+LNN+IMLTAI+SLSLVV+LVIALHIY RYALRRHARRQA
Sbjct: 5   SFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 64

Query: 68  VLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVECAVCLSA 127
           VLRRLGILA +DS D   PP  SGLDPLVMAS+PVVVFKHQLE+P      VECAVCL A
Sbjct: 65  VLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAVCLCA 124

Query: 128 IVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAEVGEGGG 187
           + DGE AR+LPNCKH FH+ECIDKWFG HSTCP CRTEAAPM+ PEPRE P AE   GGG
Sbjct: 125 VEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAPVAE--SGGG 184

Query: 188 STSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 226
           S+SRLSSFRRILSRERSS RIQPCV ++ ND V DLE Q
Sbjct: 185 SSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

[Close]

BLAST of CSPI06G22540 vs. TAIR 10
Match: AT2G42360.1 (RING/U-box superfamily protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-36
Identity = 102/247 (41.30%), Postives = 132/247 (53.44%), Query Frame = 0


Query: 8   SFDGDDIYFGPAH----PHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHAR 67
           S D D   F   H    P+ + YDLN+KIML A+ SLS V+++V ALH+Y R+ LR   R
Sbjct: 3   SNDRDHRRFNSDHHSFWPNPSTYDLNSKIMLAAVASLSGVILIVFALHLYARFVLR---R 62

Query: 68  RQAVLRRLGILAFIDSGDHHP-PPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVECAV 127
           R+   R L ++        HP    + GL+P V+AS+P         +   +    ECAV
Sbjct: 63  RREAFRGLPVIF------RHPFEMPKRGLNPTVIASLPTFTVG---ATDGVAASATECAV 122

Query: 128 CLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEA--APMMLPEPREGP--- 187
           CLS + + + AR LPNCKH+FHV+C+D W  + STCP+CRTE    P + PEPREGP   
Sbjct: 123 CLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEPEPREGPVGT 182

Query: 188 ---------------AAEVGEGGGST-----SRLSSFRRILSRERSSLRI-QPCVLQHRN 224
                          AA        T     SRL+SFR+IL+RERSS RI   C  Q   
Sbjct: 183 APQLLVETRLNLTVEAASSSSSDNKTVVSPASRLNSFRKILTRERSSNRINHSCPDQ--- 234

[Close]

BLAST of CSPI06G22540 vs. TAIR 10
Match: AT2G42350.1 (RING/U-box superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.4e-36
Identity = 93/221 (42.08%), Postives = 121/221 (54.75%), Query Frame = 0


Query: 3   SPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHA 62
           S  N + D DD  F     +   YD ++KI L   VS S+++I+V   ++Y ++ L R +
Sbjct: 2   SSNNKTDDSDDRSF---WQNSTSYDASSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRS 61

Query: 63  RRQAVLRRLGILAFID-SGDHHPPPSRSGLDPLVMASMP--VVVFKHQLESPDPSGGGVE 122
                       AF D S      P + GLD LV+AS+P  VV  K+ +        G E
Sbjct: 62  ------------AFQDLSFSVVSQPPKRGLDSLVIASLPTFVVGIKNDV-------AGTE 121

Query: 123 CAVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAA---PMMLPEPREG 182
           CAVCLS + + + AR+LPNCKHVFHV C+D W  + STCP+CRTEA    P + PEPREG
Sbjct: 122 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREG 181

Query: 183 PAAEVG-----------EGGGSTSRLSSFRRILSRERSSLR 207
           P  +              GG S SRL SFRRIL+RERSS R
Sbjct: 182 PVGDFAPPLDFAGVDNKTGGSSVSRLDSFRRILTRERSSNR 200

[Close]

BLAST of CSPI06G22540 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-29
Identity = 75/165 (45.45%), Postives = 98/165 (59.39%), Query Frame = 0


Query: 8   SFDGDDIYFGPAHPH---RNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRY----ALRR 67
           S D D I F P   +      Y ++ KIML+AIV L  VVIL++ LH+Y R+    A RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 68  HARRQAVLRRLGILAFI--DSGDHHPPPSRSGLDPLVMASMPVVVFKHQLESPDPSGGGV 127
           H RR++  RR  ++ F    S       +  GLDP V+ S+PV  F  +    DP    +
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHK-DP----I 122

Query: 128 ECAVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRT 164
           ECAVCLS   + ET R+LPNC+H FHV+CID WF SHSTCP+CR+
Sbjct: 123 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of CSPI06G22540 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-25
Identity = 66/172 (38.37%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 9   FDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHARRQAVL 68
           FD     +G  +   + Y LN KIML +++ L + VIL++  H Y R+  RR  RR  + 
Sbjct: 5   FDSSKTLWGNMNHGSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRR--IR 64

Query: 69  RRLGILAFIDSGDHHPPPSRSG---LDPLVMASMPVVVFKHQL-ESPDPSGGGVECAVCL 128
           RR+       +    P  S S    LDP V+  +P+ V+  +  ESP       EC+VCL
Sbjct: 65  RRISAHLRSLAAARDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-----ECSVCL 124

Query: 129 SAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRT---EAAPMMLPEP 174
           S   + +  R+LP C HVFHV+CID WF S S+CP+CR     A P+  PEP
Sbjct: 125 SEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEP 169

[Close]

BLAST of CSPI06G22540 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-23
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 0


Query: 26  YDLNNKIMLTAIVSLSLVVILVIALHIYGRYALRRHARRQAVLRRLGILAFIDSGDHHPP 85
           Y LN KIML++++ L + VI+++  H Y R+  RRH RR  + RR+       S      
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRR--IRRRIRSHLRTLSAS---- 81

Query: 86  PSRSGLDPLVMASMPVVVFKHQLESPDPSGGGVECAVCLSAIVDGETARILPNCKHVFHV 145
           P    LD  V+  +P+ V+    ++P P     EC+VCLS   + +  R+LP C H FHV
Sbjct: 82  PRDQALDQAVLDKIPIFVYSS--KNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHV 141

Query: 146 ECIDKWFGSHSTCPICRTEAAP 168
           +CID WF S STCP+CR    P
Sbjct: 142 DCIDTWFRSRSTCPLCRAPVQP 155

The following BLAST results are available for this feature:

BLAST of CSPI06G22540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLC3	2.1e-35	41.30	E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 ...	[more]
Q9SLC4	4.7e-35	42.08	RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1	[more]
Q8L9T5	1.5e-28	45.45	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9LZJ6	2.2e-24	38.37	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
O22255	1.6e-22	39.44	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]

BLAST of CSPI06G22540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJL6	7.4e-124	97.38	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G420520 P...	[more]
A0A5A7V7D1	4.1e-114	91.15	RING-H2 finger protein ATL40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DXK5	4.1e-114	91.15	RING-H2 finger protein ATL40-like OS=Cucumis melo OX=3656 GN=LOC103491347 PE=4 S...	[more]
G4V490	6.3e-99	98.88	Putative ring zinc finger protein (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=...	[more]
A0A6J1ESR2	1.3e-83	74.89	RING-H2 finger protein ATL40-like OS=Cucurbita moschata OX=3662 GN=LOC111437227 ...	[more]

BLAST of CSPI06G22540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744153.1	1.5e-123	97.38	RING-H2 finger protein ATL40 [Cucumis sativus] >KGN47956.1 hypothetical protein ...	[more]
XP_016900708.1	8.4e-114	91.15	PREDICTED: RING-H2 finger protein ATL40-like [Cucumis melo] >KAA0061641.1 RING-H...	[more]
XP_038877602.1	8.7e-103	84.65	RING-H2 finger protein ATL40-like [Benincasa hispida]	[more]
AEP25855.1	1.3e-98	98.88	putative ring zinc finger protein, partial [Cucumis sativus]	[more]
XP_022930874.1	2.6e-83	74.89	RING-H2 finger protein ATL40-like [Cucurbita moschata]	[more]

BLAST of CSPI06G22540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42360.1	1.5e-36	41.30	RING/U-box superfamily protein	[more]
AT2G42350.1	3.4e-36	42.08	RING/U-box superfamily protein	[more]
AT3G16720.1	1.1e-29	45.45	TOXICOS EN LEVADURA 2	[more]
AT3G62690.1	1.6e-25	38.37	AtL5	[more]
AT2G47560.1	1.1e-23	39.44	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 120..161 e-value: 2.4E-7 score: 40.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 119..162 e-value: 2.0E-14 score: 53.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 120..162 score: 12.769585
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 96..168 e-value: 2.1E-20 score: 73.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..192
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 24..174
None	No IPR available	PANTHER	PTHR14155:SF558	RING-H2 FINGER PROTEIN ATL40-LIKE	coord: 24..174
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 119..162 e-value: 2.24495E-18 score: 73.4983
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 97..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G22540.1	CSPI06G22540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane