CSPI06G21680 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G21680
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Integrase, catalytic core
Location	Chr6: 19622457 .. 19622726 (-)
RNA-Seq Expression	CSPI06G21680
Synteny	CSPI06G21680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

mRNA sequence

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

Coding sequence (CDS)

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

Protein sequence

MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF*

Homology

[Close]

BLAST of CSPI06G21680 vs. ExPASy TrEMBL
Match: A0A0A0KHJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G407130 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.2e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
          MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLL
Sbjct: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFSVFRPDDVKVYHNLKVSDTSLL 60

Query: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 90
          EGQRMDFIYAMLVEVAYVNKTQKNETTDF
Sbjct: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 89

[Close]

BLAST of CSPI06G21680 vs. ExPASy TrEMBL
Match: A0A5A7T2J1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00560 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  N N VEL+NV YVP +KKNLV++SQLTS+GNF VF P+DVKVYHN KVS T L+
Sbjct: 178 MIVPRSNFNQVELDNVFYVPGMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLI 237

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+RMDFIY M  E AYVNKT+KNET D
Sbjct: 238 EGRRMDFIYVMSAETAYVNKTRKNETVD 265

[Close]

BLAST of CSPI06G21680 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.5e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  NSN VEL+NV YV  +KKNLVSVSQLTS GNF VF PDDVKVYHNLKVS T L+
Sbjct: 193 MIVPRSNSNQVELDNVFYVSGMKKNLVSVSQLTSAGNFVVFGPDDVKVYHNLKVSGTPLM 252

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+RMD IY M  E AYVNKT+KN+T D
Sbjct: 253 EGRRMDSIYVMSAETAYVNKTRKNDTAD 280

[Close]

BLAST of CSPI06G21680 vs. ExPASy TrEMBL
Match: A0A5D3DWA1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00120 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.4e-25
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  NSN VEL++V YVP +KKNL+SVSQLTS  NF VF PDDVKVYHNLKVS T L+
Sbjct: 39  MIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLM 98

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+R+  IY M VE+AYV KTQKNET D
Sbjct: 99  EGRRIKSIYVMSVEIAYVKKTQKNETAD 126

[Close]

BLAST of CSPI06G21680 vs. ExPASy TrEMBL
Match: A0A5A7T6Z1 (Glutamate receptor 2.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001370 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  NSN VEL+NV YVPR+KKNLV VSQLT IGNF VF  DDVKVYHNLKVS T L+
Sbjct: 224 MIVPRSNSNQVELDNVFYVPRMKKNLVLVSQLTLIGNFIVFGLDDVKVYHNLKVSGTPLM 283

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+R++ IY + VE AY+NKT+KN+T D
Sbjct: 284 EGRRINSIYIISVETAYLNKTRKNKTAD 311

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: KAE8647312.1 (hypothetical protein Csa_004446 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLL
Sbjct: 402 MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFSVFRPDDVKVYHNLKVSDTSLL 461

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTDF 90
           EGQRMDFIYAMLVEVAYVNKTQKNETTDF
Sbjct: 462 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 490

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: KAA0037684.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK10689.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 5.3e-27
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  N N VEL+NV YVP +KKNLV++SQLTS+GNF VF P+DVKVYHN KVS T L+
Sbjct: 178 MIVPRSNFNQVELDNVFYVPGMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLI 237

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+RMDFIY M  E AYVNKT+KNET D
Sbjct: 238 EGRRMDFIYVMSAETAYVNKTRKNETVD 265

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: KAA0046986.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  NSN VEL+NV YV  +KKNLVSVSQLTS GNF VF PDDVKVYHNLKVS T L+
Sbjct: 193 MIVPRSNSNQVELDNVFYVSGMKKNLVSVSQLTSAGNFVVFGPDDVKVYHNLKVSGTPLM 252

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+RMD IY M  E AYVNKT+KN+T D
Sbjct: 253 EGRRMDSIYVMSAETAYVNKTRKNDTAD 280

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: TYK27792.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 5.0e-25
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  NSN VEL++V YVP +KKNL+SVSQLTS  NF VF PDDVKVYHNLKVS T L+
Sbjct: 39  MIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLM 98

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+R+  IY M VE+AYV KTQKNET D
Sbjct: 99  EGRRIKSIYVMSVEIAYVKKTQKNETAD 126

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: KAA0037956.1 (glutamate receptor 2.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 8.5e-25
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  NSN VEL+NV YVPR+KKNLV VSQLT IGNF VF  DDVKVYHNLKVS T L+
Sbjct: 224 MIVPRSNSNQVELDNVFYVPRMKKNLVLVSQLTLIGNFIVFGLDDVKVYHNLKVSGTPLM 283

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+R++ IY + VE AY+NKT+KN+T D
Sbjct: 284 EGRRINSIYIISVETAYLNKTRKNKTAD 311

The following BLAST results are available for this feature:

BLAST of CSPI06G21680 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G21680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHJ1	8.2e-42	98.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G407130 PE=4 SV=1	[more]
A0A5A7T2J1	2.6e-27	70.45	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TYD2	7.5e-27	72.73	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DWA1	2.4e-25	70.45	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7T6Z1	4.1e-25	69.32	Glutamate receptor 2.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of CSPI06G21680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647312.1	1.7e-41	98.88	hypothetical protein Csa_004446 [Cucumis sativus]	[more]
KAA0037684.1	5.3e-27	70.45	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK10689.1 Integrase, cata...	[more]
KAA0046986.1	1.5e-26	72.73	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, cata...	[more]
TYK27792.1	5.0e-25	70.45	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]
KAA0037956.1	8.5e-25	69.32	glutamate receptor 2.8-like [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G21680 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G21680.1	CSPI06G21680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0008270	zinc ion binding