CSPI06G21030 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G21030
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 25-like
LocationChr6: 19091146 .. 19092940 (-)
RNA-Seq ExpressionCSPI06G21030
SyntenyCSPI06G21030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATCTTTGTGTTGTTCGGTATGTGCATGAAAATACACAAAACAAAGTTAAAGATGAGTGTGTCGTATTTATTCTTCTCAGTATAAAGCAAACAGATGGGTTCCCTCCATCTCACGTTTGAAGCCATTATTATTGTTTTCTCTTTTCTTTTTTTGTTTTCTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTTTCAACCAAAATATATAACACAAAACAAACTTCACTTCAAACAAATTACACCAATTTCTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGTGAGTTCAGAGAGAGAGAGAGAAGAGAGCAGAGAAAATGACTTGTTATTGTTCTTCTTGTAAGTTTGGTTCACTTCTCCTTATGGCTTTTATTTGGCTTTTGTTGGCAAATGGTTCGTGTCAAAGGAAAGAACCCGTCGTAGTGGGGAAGGTGACGACAGCGACGGGAGATGAAATTAGTGGAATTTCCAAAGAGACGACAGTGGCAGTCAGCGGCGGTCGTGGCGGAAAGGTTGTTGATCATCCAGAATGGCATCTCAACTACATAAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCAATTCATAATCGGTATGACAATATTTTTTTTAGTTCAACTATATAAGTTGAGAATAGAGGTTTGAACTTTCAACAATTTTAAGAGCAATGATTAGACTACACCTAACTCCATGCTCCATGTTTCTTTTAAAAGAAAAATAAATTGACACGTGACAATTTACGAATTTTTTCTAATCAAAATTATAATACCTTTTAATTAGCAATTGAGTTATATATGGAAACGTTACGTGGTTGTATATGTTTGAAATCTTATCTTGTTATTTATTTATTTATTATTTGCTTCACTAAAAGGAAAAAAAGAAGTTGGAAATTTAAGAAAGTATATTTGATAGATTTAGAGAGAGAGAGAGAAATAAGAATTGGAAAAAGAAAGATAGGAGTGGGAGAGATAAAAAGTTGAAATTTTAATAACTTTCCCTTTTAAAACTGTTACATTGAGTTTCTTTTAGCTTAAAAAGGGTGTCATTTAAAGTCACTCTTGGTTGAAGGTGAGAGAGACACAAACATCTTTAAAACCACAGTAAATAAAAGTATGTATTTTGTGTGTACTTCAATATATTCCATCCCCCCCTTTTCCTTAATCTTAGTTTATATCTCTTTTATCCATTTCCCCCTACCTAATTAATTTACTTTTCTTCAATTAGCTCACTACAACCATTCTAATTCATGACAAATCCACTATAATATGTGTATAATATGTCAGTCGTTCAAAACTGATATATAAATTAAATCAAAACATAATTATCTTATTAATTAAATACAAGAAGATCATTTAAGTTTATAGTTTGGTTTCTTTGTTTCTTTGTAGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTGAAAAGCTTTTGTAAGAAACTGGGCTTTCAAGATCATGACACACCAAGAATATGCATCATCTGCTATATCTTGTATGTATTAACTTTAGGTATTAAACGATGAAAAACTTATCGGATCGCGATTTTTCGTTAGAATTTTAATTAGGATAATCCTTTCGATAACATTTTTGTTTTTAGTTTTAAACCATATGTGTATTTGCTGCCATTTTTCTTCATCAATCTGTCTCATCTACTTATATATTCAAAACCAAATAAGAATTTGAAAG

mRNA sequence

GTTTATCTTTGTGTTGTTCGGTATGTGCATGAAAATACACAAAACAAAGTTAAAGATGAGTGTGTCGTATTTATTCTTCTCAGTATAAAGCAAACAGATGGGTTCCCTCCATCTCACGTTTGAAGCCATTATTATTGTTTTCTCTTTTCTTTTTTTGTTTTCTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTTTCAACCAAAATATATAACACAAAACAAACTTCACTTCAAACAAATTACACCAATTTCTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGTGAGTTCAGAGAGAGAGAGAGAAGAGAGCAGAGAAAATGACTTGTTATTGTTCTTCTTGTAAGTTTGGTTCACTTCTCCTTATGGCTTTTATTTGGCTTTTGTTGGCAAATGGTTCGTGTCAAAGGAAAGAACCCGTCGTAGTGGGGAAGGTGACGACAGCGACGGGAGATGAAATTAGTGGAATTTCCAAAGAGACGACAGTGGCAGTCAGCGGCGGTCGTGGCGGAAAGGTTGTTGATCATCCAGAATGGCATCTCAACTACATAAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCAATTCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTGAAAAGCTTTTGTAAGAAACTGGGCTTTCAAGATCATGACACACCAAGAATATGCATCATCTGCTATATCTTGTATGTATTAACTTTAGGTATTAAACGATGAAAAACTTATCGGATCGCGATTTTTCGTTAGAATTTTAATTAGGATAATCCTTTCGATAACATTTTTGTTTTTAGTTTTAAACCATATGTGTATTTGCTGCCATTTTTCTTCATCAATCTGTCTCATCTACTTATATATTCAAAACCAAATAAGAATTTGAAAG

Coding sequence (CDS)

ATGACTTGTTATTGTTCTTCTTGTAAGTTTGGTTCACTTCTCCTTATGGCTTTTATTTGGCTTTTGTTGGCAAATGGTTCGTGTCAAAGGAAAGAACCCGTCGTAGTGGGGAAGGTGACGACAGCGACGGGAGATGAAATTAGTGGAATTTCCAAAGAGACGACAGTGGCAGTCAGCGGCGGTCGTGGCGGAAAGGTTGTTGATCATCCAGAATGGCATCTCAACTACATAAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCAATTCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAG

Protein sequence

MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVSGGRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA*
Homology
BLAST of CSPI06G21030 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 73  HLNYISKRRVPNGPDPIHNRRAGNSGRPP 102
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

BLAST of CSPI06G21030 vs. ExPASy TrEMBL
Match: A0A0A0KJ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.0e-52
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVSG 60
           MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV G
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60

Query: 61  GRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           GRGGKVVDHPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

BLAST of CSPI06G21030 vs. ExPASy TrEMBL
Match: A0A5A7TRB3 (Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00170 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 1   MTCY--CSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60
           MTCY  CSSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  SGGRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
               GGKV DHPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  G---GGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of CSPI06G21030 vs. ExPASy TrEMBL
Match: A0A1S3CMA2 (uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 1   MTCY--CSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60
           MTCY  CSSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  SGGRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
               GGKV DHPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  G---GGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of CSPI06G21030 vs. ExPASy TrEMBL
Match: A0A6J1G3Y8 (uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC111450563 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.7e-27
Identity = 68/104 (65.38%), Postives = 76/104 (73.08%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVSG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  + V G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKE--MEVVG 60

Query: 61  GRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           GRGGK V   EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CSPI06G21030 vs. ExPASy TrEMBL
Match: A0A6J1KBR7 (uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 68/104 (65.38%), Postives = 76/104 (73.08%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVSG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  + V G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKE--MEVVG 60

Query: 61  GRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           GRGGK V   EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CSPI06G21030 vs. NCBI nr
Match: XP_004146759.1 (uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical protein Csa_003437 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVSG 60
           MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV G
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60

Query: 61  GRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           GRGGKVVDHPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

BLAST of CSPI06G21030 vs. NCBI nr
Match: XP_008464794.1 (PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa] >TYK11343.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 6.2e-43
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 1   MTCY--CSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60
           MTCY  CSSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  SGGRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
               GGKV DHPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  G---GGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of CSPI06G21030 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 68/104 (65.38%), Postives = 76/104 (73.08%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVSG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  + V G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKE--MEVVG 60

Query: 61  GRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           GRGGK V   EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CSPI06G21030 vs. NCBI nr
Match: XP_022999782.1 (uncharacterized protein LOC111494028 [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 3.1e-26
Identity = 68/104 (65.38%), Postives = 76/104 (73.08%), Query Frame = 0

Query: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVSG 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  + V G
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKE--MEVVG 60

Query: 61  GRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           GRGGK V   EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of CSPI06G21030 vs. NCBI nr
Match: XP_038886261.1 (uncharacterized protein LOC120076488 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 5.2e-26
Identity = 74/111 (66.67%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 1   MTCYCSSCKFG-SLLLMAFIWLLLANGSCQRKEPVVVG------KVTTATGDEISGISKE 60
           M+CY  SCK G SL +M FI+LLL NGS QR++PV          +T     E SGISKE
Sbjct: 1   MSCYSPSCKLGNSLAVMVFIFLLLVNGSHQRRQPVAAEMEKATVTITATMTAEFSGISKE 60

Query: 61  TTVAVSGGRGGKVVDHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 105
             V V GGR GKVV HPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  MKV-VHGGR-GKVV-HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 108

BLAST of CSPI06G21030 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-08
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 74  LNYI-SKRRVPNGPDPIHNRRAGNSGRPPGKA 105
           L+Y+ SKR+VP GPDPIHNRRAGNS RPPG+A
Sbjct: 71  LSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

BLAST of CSPI06G21030 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 73  HLNYISKRRVPNGPDPIHNRRAGNSGRPP 102
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LFL41.5e-0468.97CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P... [more]
Match NameE-valueIdentityDescription
A0A0A0KJ256.0e-5298.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1[more]
A0A5A7TRB33.0e-4385.85Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CMA23.0e-4385.85uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=... [more]
A0A6J1G3Y88.7e-2765.38uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1KBR71.5e-2665.38uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028... [more]
Match NameE-valueIdentityDescription
XP_004146759.11.2e-5198.08uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical ... [more]
XP_008464794.16.2e-4385.85PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Cla... [more]
XP_022946527.11.8e-2665.38uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3... [more]
XP_022999782.13.1e-2665.38uncharacterized protein LOC111494028 [Cucurbita maxima][more]
XP_038886261.15.2e-2666.67uncharacterized protein LOC120076488 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G69970.26.9e-0878.13CLAVATA3/ESR-RELATED 26 [more]
AT3G28455.11.1e-0568.97CLAVATA3/ESR-RELATED 25 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..104
NoneNo IPR availablePANTHERPTHR34277:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 5..104
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 5..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G21030.1CSPI06G21030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment