CSPI06G19910 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G19910
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 17853343 .. 17853619 (+)
RNA-Seq Expression	CSPI06G19910
Synteny	CSPI06G19910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGTCAGAAGAATCCCATTCAACTAACCTCACGCTTTGCTCGTGACTTTTCTCGTTTTAGGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

mRNA sequence

ATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

Coding sequence (CDS)

ATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

Protein sequence

MAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIGPVFWIHEARFSS*

Homology

[Close]

BLAST of CSPI06G19910 vs. ExPASy TrEMBL
Match: A0A0A0KIS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G373200 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIG 60
          MAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIG
Sbjct: 7  MAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIG 66

Query: 61 PVFWIHEARFSS 73
          PVFWIHEARFSS
Sbjct: 67 PVFWIHEARFSS 78

[Close]

BLAST of CSPI06G19910 vs. NCBI nr
Match: KGN47676.1 (hypothetical protein Csa_018273 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.1e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIG 60
          MAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIG
Sbjct: 7  MAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIG 66

Query: 61 PVFWIHEARFSS 73
          PVFWIHEARFSS
Sbjct: 67 PVFWIHEARFSS 78

The following BLAST results are available for this feature:

BLAST of CSPI06G19910 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G19910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIS7	1.0e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G373200 PE=4 SV=1	[more]

BLAST of CSPI06G19910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47676.1	2.1e-34	100.00	hypothetical protein Csa_018273 [Cucumis sativus]	[more]

BLAST of CSPI06G19910 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19910.1	CSPI06G19910.1	mRNA