CSPI06G19380 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G19380
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionF-box/kelch-repeat protein
LocationChr6: 17511456 .. 17511811 (+)
RNA-Seq ExpressionCSPI06G19380
SyntenyCSPI06G19380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCTATGGCATTGACTGGTATGTTCTTCTTTTCTCTTAACTATGACGCCGTGAATAGATGCTCATTTCTTCCGATTTCACCAGCAATAAATTTAAGCTTTGTGCTGCACAATGTGTAGGTATTTTGACAATGCATAGAGGAAGAGATAGCCCTATAAAGTTGCAGAACATCACTCATACAGCAACATCTAGTAAACATAAACGTGAATTTGGTATGGACTTTGAATCAGACTGGACAAGACACGTTAAGTCTTCTGCATTTGCTGCTCCAGTGATCCGTTCTGCAACTTCGTTTATGCGTTGGTCTTGCAGAATCCCAATTAGTGAAGGATATCATGAATTTCTTTAA

mRNA sequence

ATGGCAAGTTCTATGGCATTGACTGGTATTTTGACAATGCATAGAGGAAGAGATAGCCCTATAAAGTTGCAGAACATCACTCATACAGCAACATCTAGTAAACATAAACGTGAATTTGGTATGGACTTTGAATCAGACTGGACAAGACACGTTAAGTCTTCTGCATTTGCTGCTCCAGTGATCCGTTCTGCAACTTCGTTTATGCGTTGGTCTTGCAGAATCCCAATTAGTGAAGGATATCATGAATTTCTTTAA

Coding sequence (CDS)

ATGGCAAGTTCTATGGCATTGACTGGTATTTTGACAATGCATAGAGGAAGAGATAGCCCTATAAAGTTGCAGAACATCACTCATACAGCAACATCTAGTAAACATAAACGTGAATTTGGTATGGACTTTGAATCAGACTGGACAAGACACGTTAAGTCTTCTGCATTTGCTGCTCCAGTGATCCGTTCTGCAACTTCGTTTATGCGTTGGTCTTGCAGAATCCCAATTAGTGAAGGATATCATGAATTTCTTTAA

Protein sequence

MASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPVIRSATSFMRWSCRIPISEGYHEFL*
Homology
BLAST of CSPI06G19380 vs. ExPASy TrEMBL
Match: A0A0A0KD56 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365200 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.3e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1   MASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPV 60
           +ASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPV
Sbjct: 129 LASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPV 188

Query: 61  IRSATSFMRWSCRIPISEGYHEFL 85
           IRSATSFMRWSCRIPISEGYHEFL
Sbjct: 189 IRSATSFMRWSCRIPISEGYHEFL 212

BLAST of CSPI06G19380 vs. ExPASy TrEMBL
Match: A0A5A7VCL2 (F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00410 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.6e-33
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 0

Query: 9   GILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPVIRSATSFM 68
           GILTMHRGRD+P KLQNITHTA SSK KREFGMDFESDWTRHVKSSAFAAPVIRSATSFM
Sbjct: 39  GILTMHRGRDNPKKLQNITHTAISSKQKREFGMDFESDWTRHVKSSAFAAPVIRSATSFM 98

Query: 69  RWSCRIPISEGYHEFL 85
           RWSCRIPISEGY EFL
Sbjct: 99  RWSCRIPISEGYQEFL 114

BLAST of CSPI06G19380 vs. ExPASy TrEMBL
Match: A0A5J5ASN4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033169 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.0e-17
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1  MASSMALTGILTMHRGRDSPIKLQ-NITHTATSSKH---KREFGMDFESDWTRHVKSSAF 60
          M+S MAL     M  GR++  KL+ +IT   T+ K+    R  GMDFESDWT+H KSSAF
Sbjct: 1  MSSCMALADTWAMCGGRNNSGKLEIDITLDRTTKKNYLRDRTTGMDFESDWTKHRKSSAF 60

Query: 61 AAPVIRSATSFMRWSCRIPISEGYHEFL 85
           A VIRSATSFM WSC+IPISEGYHEFL
Sbjct: 61 TAEVIRSATSFMPWSCKIPISEGYHEFL 88

BLAST of CSPI06G19380 vs. ExPASy TrEMBL
Match: A0A5J5AWB6 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033166 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 53/88 (60.23%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1  MASSMALTGILTMHRGRDSPIKLQ-NITHTATSSKH---KREFGMDFESDWTRHVKSSAF 60
          M+SSMAL     M  GR++  KL+ +IT   T+ K+    R   MDFESDWT+H KSSAF
Sbjct: 1  MSSSMALADTWAMCGGRNNSGKLEIDITLDRTTKKNYLRNRTTDMDFESDWTKHRKSSAF 60

Query: 61 AAPVIRSATSFMRWSCRIPISEGYHEFL 85
           A VIRSATSFM WSC+IPI EGYHEFL
Sbjct: 61 TAEVIRSATSFMPWSCKIPICEGYHEFL 88

BLAST of CSPI06G19380 vs. ExPASy TrEMBL
Match: A0A444WZZ5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066056 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.6e-13
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1  MASSMALTGILTMHRGRDSPIKLQNITHT-ATSSKH--KREFGMDFESDWTRHVKSSAFA 60
          + SSMA T +  M +G      L+N + T    S H   R   M+FESDWT+H KSSA+ 
Sbjct: 2  LPSSMAYTDLWAMCKGGYKFSSLRNNSLTKINQSNHSSSRTCVMEFESDWTKHRKSSAYT 61

Query: 61 APVIRSATSFMRWSCRIPISEGYHEFL 85
          A VIRSATS + WSCR+PI EGYHEFL
Sbjct: 62 AHVIRSATSILPWSCRVPIGEGYHEFL 88

BLAST of CSPI06G19380 vs. NCBI nr
Match: KAE8647234.1 (hypothetical protein Csa_019002, partial [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 8.8e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPV 60
          +ASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPV
Sbjct: 16 LASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPV 75

Query: 61 IRSATSFMRWSCRIPISEGYHEFL 85
          IRSATSFMRWSCRIPISEGYHEFL
Sbjct: 76 IRSATSFMRWSCRIPISEGYHEFL 99

BLAST of CSPI06G19380 vs. NCBI nr
Match: KAA0064737.1 (F-box/kelch-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-32
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 0

Query: 9   GILTMHRGRDSPIKLQNITHTATSSKHKREFGMDFESDWTRHVKSSAFAAPVIRSATSFM 68
           GILTMHRGRD+P KLQNITHTA SSK KREFGMDFESDWTRHVKSSAFAAPVIRSATSFM
Sbjct: 39  GILTMHRGRDNPKKLQNITHTAISSKQKREFGMDFESDWTRHVKSSAFAAPVIRSATSFM 98

Query: 69  RWSCRIPISEGYHEFL 85
           RWSCRIPISEGY EFL
Sbjct: 99  RWSCRIPISEGYQEFL 114

BLAST of CSPI06G19380 vs. NCBI nr
Match: KAG7020136.1 (hypothetical protein SDJN02_16818 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 3.1e-29
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 0

Query: 1   MASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREF-GMDFESDWTRHVKSSAFAAP 60
           +ASSMALTGIL MHR R + IKLQ+ITHTA SSK+ REF GMDFESDWTRH KSSAFAA 
Sbjct: 67  LASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQ 126

Query: 61  VIRSATSFMRWSCRIPISEGYHEFL 85
           VIRSATSFM WSCRIPIS+GYHEFL
Sbjct: 127 VIRSATSFMPWSCRIPISKGYHEFL 151

BLAST of CSPI06G19380 vs. NCBI nr
Match: KAG6585216.1 (hypothetical protein SDJN03_17949, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.3 bits (347), Expect = 3.1e-29
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 0

Query: 1   MASSMALTGILTMHRGRDSPIKLQNITHTATSSKHKREF-GMDFESDWTRHVKSSAFAAP 60
           +ASSMALTGIL MHR R + IKLQ+ITHTA SSK+ REF GMDFESDWTRH KSSAFAA 
Sbjct: 75  LASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQ 134

Query: 61  VIRSATSFMRWSCRIPISEGYHEFL 85
           VIRSATSFM WSCRIPIS+GYHEFL
Sbjct: 135 VIRSATSFMPWSCRIPISKGYHEFL 159

BLAST of CSPI06G19380 vs. NCBI nr
Match: KAG2702702.1 (hypothetical protein I3760_06G102300 [Carya illinoinensis] >KAG6651297.1 hypothetical protein CIPAW_06G101300 [Carya illinoinensis] >KAG6708844.1 hypothetical protein I3842_06G101800 [Carya illinoinensis] >KAG7975383.1 hypothetical protein I3843_06G095400 [Carya illinoinensis])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 5  MALTGILTMHRGRDSPIKLQNITHTATSSKH--KREFGMDFESDWTRHVKSSAFAAPVIR 64
          MAL+ I  M  GR++ + L++I H  T   H   +  GM+FESDWTRH KSSAF A VIR
Sbjct: 1  MALSDIWAMCGGREN-VGLESIVHIVTGRNHCKSKTSGMEFESDWTRHGKSSAFTAQVIR 60

Query: 65 SATSFMRWSCRIPISEGYHEFL 85
          SATSFM WSCRIPI EGYHEFL
Sbjct: 61 SATSFMPWSCRIPIGEGYHEFL 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KD564.3e-4098.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365200 PE=4 SV=1[more]
A0A5A7VCL28.6e-3393.42F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5J5ASN43.0e-1761.36Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033169 PE=4 SV=1[more]
A0A5J5AWB61.5e-1660.23Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033166 PE=4 SV=1[more]
A0A444WZZ57.6e-1352.87Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066056 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8647234.18.8e-4098.81hypothetical protein Csa_019002, partial [Cucumis sativus][more]
KAA0064737.11.8e-3293.42F-box/kelch-repeat protein [Cucumis melo var. makuwa][more]
KAG7020136.13.1e-2982.35hypothetical protein SDJN02_16818 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6585216.13.1e-2982.35hypothetical protein SDJN03_17949, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG2702702.12.8e-1762.20hypothetical protein I3760_06G102300 [Carya illinoinensis] >KAG6651297.1 hypothe... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G19380.1CSPI06G19380.1mRNA