CSPI06G17940 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G17940
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA-binding protein 2
LocationChr6: 16287963 .. 16296293 (-)
RNA-Seq ExpressionCSPI06G17940
SyntenyCSPI06G17940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCTTGGAGCGGAGAGCTAGAGAGACAAAAATCAATGCAATGGCAATTGCGTGGCATCATCCTCAATAGGGTTTTGCTTTGATTCATAAATTTTAGTTGTTAAAATAAGATGATGTTAGAATTTTGATAACAGTAATAATGTTTGTTGCTTAAGATTTGTTTTTTTTTCTTTAAATTTTGAAGTTCACTTGGTTGTTATTACAAGAAGCTTTAGGAACATATGCCGGGTATAATTAATATTTGCATATTATGATCCCCTAACTTAATGATGTTTAGATACTTCCATGAAGTTTCTTTTGGGCTTGATCCACATTTGCGAACATATTATTGGTGACAAACTGACATCCTACAATAATCTTGAAGCCTTCATGAAGAGCTATTCACTTGGTTTCATAAACTAGAAGTTGAGGTTTTTTGGGTTTGGATGAAAAATTTCACTTGAGTTACAAATGGTTCTGTTTAAGACTTCGATTTTCTATTTACTTTTGCTTTTACAGAGGTTTCCTGTCCATTGAACTTAATATTGAAAGTGATAAACCAACGAAAACACCGAATTATGTGGAAACTTGAGTACCGGGAGAAAAAACATGATATTTCTCTTCTTATTATTTTCTGATAATTACAAAAGGTACAAGAGGGGGGAATAAATAGAATAGTACAGTGAGTTAAAAAAGGAAAGATATTTAGGGAAGCCCACCAACTCTAATACTTAAAGTAGTGTTATATAGTATTTGGATTGTGAGGATGAAGAGATTAGATACATAAACAATTAATTTAAATATTATCATTGTACGATTGAACTTTCTGTACTCGTTGACTTGCTTTTCCCTTTTAACATATCTTTTATTACGTTGCTGATGGCATCTGTCCTTTGATGTGTGGAATGAGCTCTCTTTTCCCCACCTCCCCCGCGATCTTCCCTTATTCTTCTTCTTTTGATCTTCTTAGCTGTTTTCCTTTTTGTAAATTGGAAACAGAATTATGCCCTGCTTTCACTCTCTGCAGAACTTCCAGCCTCTGGATTGTCTACCGGACATGATATGCACAATTATTTAACAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGTTCGGCATATGATCGTTATCTCCAGAGTGTGGTATGACTGAAATCTAGATTTATTCTATTTTCTTGCCTCGCAGTTTGAATGCTGAAAAGTTTTCGTAATTGCTTCTGAAGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTAGGAACAGAATGCCTGGGCCATTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCCAATGGTCGAAATCTTGAGTATGGTAATCATCTTCCTGTAGATTCGATGAGCAGACCTGGACGTGAAACTGTCCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGCGGGAAGTAGCTCGTATCCTTTTTATAGGTGGTGATGCCACAAGCAAACTTATTTTGATTTTTTTTTACCTTTCAATTATTTACAAAAAACGAAAAAAAACTTCATTCCTTTATTCATATATATGTACACATAAAACTACATTCCTTCACTCAAATGTAGATATTTTCCGCCCCTTTGTGGGATATAAAGAATTAAGATTTGTGAGCAAAGAATCTAAACATGTAATAGTCCATTACTAGTTAGTGTTTTGTTGTTTTCGAATTTTCTTTGTTAACTTTCGAACTTGCGCTAACCTTTACTTTCTTCTTTGTGTTAATTTTGTTTCAATTTATAGCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTATATTCTCGTTTTGCCATATTGACCTTTGCAGTTCCTATAGCAGCAATATTTTTCCCTTGTAGCTACTTTTTTACTCTGGTAGAAAGGGTTGGAATTGAATTAATTGTAGAACATCGTTTCTTCAGAAAAATTCTTATCATGTTTGTATTATTACTGAACTTTTGTATACATGCATGTGCATCATGTCTTTCTGGTTATTGGGCGTGGCTATGAGTATACTCTTGTGTCGAGGAGTTCTGGTCTAGTTAGGAGCTTTGATTGGACTTGGAAAATTTATTTGGTTTATGTCCAGTATATAAATTCTAAGGGTAATTTTAGGATTTGAGTATTTTTCTCGTTTGTTTTCTTTTAGGATTTGATTTTACTTCCCTTTCTTTTTCTGTTAGAAGATGTTGGAGAAGTTGAGAGTCCCACATTGGAAAAACCAGGGAGACTCATACTCCATATAAGATAGATGAGTTACTCCTCTCATTGTCAATTGGTTTTGAGATGGAATCCCATACTATCAAGTTTATCAAAAGATAAACTGATTTTATTGCTGAAGCGAGATTTCTGCTTCACACTTTCATCAAACAGACTCTTGACTTTTCCTTGACTAACCAAAGAACCCCCTTTCTTCTTTTCATGGCCATTCATTTCAAAGAGAGCTAAATGCTGTGGCTTAACGCAGTTAGAGCAGTGCTCGGAGATGTGTGGTTATACTTTGATATAAATAGAAGGAATTTTCAAGATTACATGACATGCAGTTCTCTACGAAGTATAGTGGGTTTTAATGACTCCAGCTTTTGTGAGCTAGTCTTGTAATTTCATCTTATTAATAAGATTCTGTTTCCCATTAAAGAAACATCTAGGTGCATGTTAATAAATTTTTCTTAAATGGAAGTAGTTTCATTGTTCATGTGACAACTTGTTGATGTTTAATTTTTGTTGAAAGAATACACGATAGATTTGCTAAAAAATGTATCTGATTTTCACAGGTTATAAAATCGATGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCAGGTTCTGGATCTGGCGGCAAAAGGTGAATAAGCTATAGAGACAGGACGACCAATTTAAATGGAGATGTGTTTTCTTCTAGTGCACATTTTACTAGCTGCTTATGCATGGATTATATGTTAGACATGCTGTTGTTAAGATAGCCAAATTGTAGCCGACCCCATTGAATATTAAAGTTGCTTGTAAATTAAGGGGATTAGATTCAAAGTGTTTCAATAGTCATATGTGCAATTGAATTTTGATGTACAATTATGCCAGTGCTTCAGAATTCAAAGATATATGTGATACAATTTTCATAAACTGTTGTTTCTTCCCTGCACATTGAATACATTCCCACACATATTTTGGCATGGTGGATTAATATTTTGAACTACAGTAGTTATGACGTATTAAAAGGCTAGTAAGTTTTGTAACAATGGTGGGAGTCCAATTAGAATGTTTTCTGAATCTCTATAAAGTTAATATAGGATATTTGAGGTGTATTAGTAGCTGACGACTTGTTTGTTGGATTGAATTGAATTAGTGGTACTATTGTAACGAATAGAGCAACATGGTTGACAAGTAATTAGCTCAAAAAGGTAGTTCTCTTTACATGGCATCGCTTTTACTCTGTTTACTAATTCAATCAATAAATTTTTTTATTCAATTTTATCTTTATTGCTATTATTTTTTCATGGAGAGATTCATTCAGGTGCTATAGCAGGAATTTGGAGAGTTCCTGCGTCCTCCAACACACCAAAATCAGCCTATATCGCTGGTCATTCCACATACGAATCTGTGGCACCGCAGGTAACTAACTTCAAATTTTGCTTGACAGTTAACTGTATAGCGGCCATATGCAATAAAAATCTAGACAAAAATTTTTGATATCAATTAACAGTGAAGTCTTCTTCTTGGCATGATGTTGTATTAAATATCTTGGAAGTTTCCTAGCTATCATCGATTAGGAGAAGGCATTTAGATGTGAAGTTGTGGCTAATTATTCACCACATAGAGGTCAATAAGTGTCTGCTTAGCAATGCTGTTGCACATAGATGTTAAACTGGTTGTTTGGCTTGGTGATTGAATTAAAATAAAAGATGATTCTGAATTTCCATGGTTTTTGGCCCCAACTATTTATGAGTCAGTGCCCCCCTCTTCATGTAAGAGTAATAAAAGGTGGCCCCAGTGTTGATTTTGCATCCCAAACAGTTCTGGTTTGAATTTCTATAGGTTTTTAGACCCACACCATAGAAAAAACTTCATGAAAACTTAGTGAATGCCAGAGGCCAAGTTAACCCATCTGCTTGGAGTTGGAGAAAAAATGGGTTCTTCAATTGCAACTGCATACCCCCCTTTGTTATCTCCCTTCTCCTTGCATTGGTGTCTTTGAATCTGCCATCAAAATTTAGTGCAGCATATGCTCATTATCCACCTCCTTTACCGAAAAAGCATAAGCAATCAGAGCCGCCAGTGCCACAACCTTTTGTTTCGGAGCCAATAGTTCCCTATTTTCCCTTTGTGTACGTACCAATTCCATCCCCATCTGAGAAGCCTTATGAACCACACCCACCACCACCACTAAAGCAGCCCCAATCTCCGTTATCTCCATCTTCCAACCCTCTAGTTCCTTATTTTCCTTTTGTATATGTACCATTGCCATCCCCATCTCAAAAGCCTTGTGAAGTTGCAGCACCTTCGCCATCTTTAGTGTTCACACGACCTGTAGATCCTTATTATCTCTTCCGATTTTCACCACCTTCCCCTCAAAAACTTCCGTATCCGATTGGCCACCTTCAATTTCCTTCGCCTTTGCCTCCGTCTCCTTACTAAACAGTAAACACTACCATTTGCATCAACAACATGATAGATAGGATAAAGCTTACTTGGCAGATGTTAAGTTTTTGCTGTTATTAATAAATTTATATGGCCACTGCACTAAAATATCTCTAGCTTTTGATTGCGACTTTTGGGATTTTGGGTTATGTTCTTATTCTCTGGGTTAAGCTTGTATTGTTCTTGTCACTATTGTACTGTACTTAACCATTCTGCTCAATATCACTATAAACTTTGAAGTTGTATCAATTTAAATTCTAAACTAATAGTTTTATCAATTTAAACTCTAAAATTTTATAAGGATATAAATATAAAGTACAAACTTTCATAAAACATATCAATTTAGGCTCTAAATTTTCGCAAGTGTATGTAAACAAAAGATAGAGATGATTTAAATTGATACTATGAAAGTTTATAATTTAAATTGATATGCTTGTCCATGTTAAAAAAATTTATTGAAAAAAATTAAAGTGTTTGTAAGCCACTCAAAATAACATTTAAATCATTTATGACAGTTGCTTTTAAACCCTTTTTCACTCTGTTTGGATTGTCTTTTAATCTCATCTCCCTACATTACAACAATTGAGCTCGAATATTATTCAAACTTTGACATTTTGGTTTATTACAGGTGCCTTGAGTTGTTTTCACGCTGACCATACTAACACAATTTAACAACTTTTCTCATCTCTTAACTAGCGGGGAAAAGTAACTTTTTCTTTTCTTTCTCTAGGTGTAACGGTATTTTTAGTTGTCTTCGACCTTATATTTAGATGCTGTTTATGTTAAGTTAACGTAGACATTTAGCTCGTGTAGTCTTAAAATTTTAATTTAGTGTCTATGATTTAAGTTTAATTTTGAATTTAATTAAGTCTTAGTTTCAGTTTAGAATTCATGCACAAGAAGATTTAATGGAACTTATAAAATTTAAGTCATAGACATATCAACTTTGAAGAATGCTCAAATCATATGAGGACTTATAGTTAAACTTTTGAAACCACATGAACATAAAGTTCGTTCTTCTCATTGCATCATCTTCTTAAATCTACCATCAACAAGATGTTCATTCCCCACTACTCAAAGCCACTGCCGTTACCACCGTGAAACCATAAAGCAATACACTGTGAAGTGACGGTGGCAGTCTGTAAATCGCCTCCTCTTCTTTCCAATAACACAATTTTTTATTGCATCCACAACCTTAATATTATGAATGCTATAATACTATAAGGTTTAATTTTTATATTTGTCAACTATATATCCAAATTAAACCATGTTATATATGCATCTCAATTTGCCTCTTTGTTTGTTTTATTTTGGATTTAATTTGTTTTACTTTGTATTTTTGGTTCAGTATTATTACAAAAGTGACACATATGCATGGCTACGAAGATATATTTGAATCTTTTGAGAGGATTTACTATATCCAAGTCCACGTGTGTGTACCTATTATTTAGTACCTTACCTTTCTGGACACGATCCTATAATTTTGGCCATCTAAACATTTAGGTTATCTATATTTTTGAAAAACAAACAATCCCTTAATTATTATCCTAAAAGTACTAAGCACGGTTACCCCAATTCGTGAGTGTGAAAATCAATAATGATCATTAATAATCATCAATTATTATGTATGCATATCTCTATGCTAACTTTGCATACATCATTTTACCTACCATTTTCTTGTGTTTTCTGATCTGGCAAAGTAATACTTGGGGTGCAGTTTTATATAGATTAACCTCTTCCCAACCTAGCTAGGAGTGTTTACGATAACCATTTCGCTATTTACCAATGTCTGAAATCTAACCTTTTGATTATAACTTTTAGTGTTAGAGATCACCATCCCTATTGTGATCACCAACCTTAATTCGATATCCATCTCTATTGCAATTCTTTGTTTGTTACAATTTGCTAGGATGTTGTTATTGCAGTGTGTTGGTTGATTTTATTAAAGTAGTAAAACTTGAGCATCTTGGATAACATGTCAAAGGGTAACTTTAGTAAAATATTCTTTTTATATATAGTTGCGTGATTTGTAAGATTTCATGGATCCTTTATTCTTGTGCATTATATGCCTTCCTTATTCTCCTGCAAATAATATAATTCTCTCTTAAAATATATTCTCAAGACCAATTATATTTATAATAGTGCTTTTATTCAATTATAGGCTTATTAGTGTCTCATTAGTTAAAATTTGTGCGTTGAACGTTTTGAGCTTATAGGATATATCTAAGCCTCAACCTTCATATATTGGTATTGAAAATCCTTGTGCTTGTTTGCTGAAACTTTTTGTTAGGTAGCCATTGTGAAACTTGAGAGAAGTTCGATATTGATACAACTGTATTTTAGTGGGAACCTAAATATAGTGAATGTGAGGGGATCTCACTCTTTGGAGAAGCCTAAACATATTTTGTTGAGGGGATCTCATATGAAGCTTGAAGAAGCATTTTTTTTTAATGGAAGATCTCAAACTAATTAGGAGGAGCCTAAGTTGAAACTAAAGTTGAAGCTATGTGGGAGTCACTGAAGAGGGAGTCTGCTAGGCCCCCATTACGTTTTACATACAGTAGGAGAAATAAAAATATAATTGCCTCACATGGGAATGAAAGAGGAACGGAAGGAGAGCAGAACCACTCGGGTGGGATCTAGTAGTTAGTTAGAACTTCCAAGTAAAAGGAGAGGAAAGGGAGAGGGACAGTTATCGAAGAATTTGGCAGAAGTTTGGGTGGCCTGCATTCTCTCTTCATAGTGAAGAATAAGCAGCCGGTTCAGGTTGTTTAGTGATTGTTTTTTTGTTTAGTTCTATGTTGAGTCTTGTAAGTTGTTTGGAATTTTTGTTCTTGTTAATTGTTGAAGTGTTAGTCGTTTATTTCATTGTTGAGATTGTCTACTTGATTCCCTTGTCATCAAATCACCATTAGTGTTTCTTCTGTATTTGAATATATTTTGCAATATACAAGATACCTCTGTGGTATCCTTACAATTCGTATCAGAGCATTTGAAACCTGAGCAAACAAAAGTAAATGGCAAAGAAAATGGATGAGAGGATGGATCTGATGGAATATAAGCTTCAGAAGTTGCCGATCATTGAAATATATTGATAAACTCTAATTTATGCACTATGTAATGTAGTTCTATGGACAATTCCAAATTTCATAATGCTTCTTTTCTTTTTGTGGATTTATGAAGGGATCAAATGCTTCAATCCGGTCCACAACGGAAAGGATGAAATCACATTCTTTGATTTCTTAAATGAAAAAACAAGAAGGCTATATACGCACCACACTGTTTTGATGACTAACCACAACAAAATCTTCTCCTTCAACTGACGGTGAGCTCCTTCTCCAAATCTTCCTTCCTTGGTACGACTCTCACAAACATTCATGATTTTTAGAGAACCCTTTAAAATTGGGAGAACATTTTCTAGAGAAAATCTATGCAGAATGGTTGTGCATAGTGCATAAATTTGATGAATAACTCTCACAAACATTGTGCAGATATTTCGTGTACAAAGGGCTCCCTGGGC

mRNA sequence

ATGGGTGCTTGGAGCGGAGAGCTAGAGAGACAAAAATCAATGCAATGGCAATTGCGTGGCATCATCCTCAATAGGAATTATGCCCTGCTTTCACTCTCTGCAGAACTTCCAGCCTCTGGATTGTCTACCGGACATGATATGCACAATTATTTAACAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGTTCGGCATATGATCGTTATCTCCAGAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTAGGAACAGAATGCCTGGGCCATTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCCAATGGTCGAAATCTTGAGTATGGTAATCATCTTCCTGTAGATTCGATGAGCAGACCTGGACGTGAAACTGTCCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGCGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTAAGATTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATCGATGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCAGGTTCTGGATCTGGCGGCAAAAGTGGTACTATTGTAACGAATAGAGCAACATGGTTGACAAGTGCTATAGCAGGAATTTGGAGAGTTCCTGCGTCCTCCAACACACCAAAATCAGCCTATATCGCTGGTCATTCCACATACGAATCTGTGGCACCGCAGGGATCAAATGCTTCAATCCGGTCCACAACGGAAAGGATGAAATCACATTCTTTGATTTCTTAAATGAAAAAACAAGAAGGCTATATACGCACCACACTGTTTTGATGACTAACCACAACAAAATCTTCTCCTTCAACTGACGGTGAGCTCCTTCTCCAAATCTTCCTTCCTTGGTACGACTCTCACAAACATTCATGATTTTTAGAGAACCCTTTAAAATTGGGAGAACATTTTCTAGAGAAAATCTATGCAGAATGGTTGTGCATAGTGCATAAATTTGATGAATAACTCTCACAAACATTGTGCAGATATTTCGTGTACAAAGGGCTCCCTGGGC

Coding sequence (CDS)

ATGGGTGCTTGGAGCGGAGAGCTAGAGAGACAAAAATCAATGCAATGGCAATTGCGTGGCATCATCCTCAATAGGAATTATGCCCTGCTTTCACTCTCTGCAGAACTTCCAGCCTCTGGATTGTCTACCGGACATGATATGCACAATTATTTAACAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGTTCGGCATATGATCGTTATCTCCAGAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTAGGAACAGAATGCCTGGGCCATTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCCAATGGTCGAAATCTTGAGTATGGTAATCATCTTCCTGTAGATTCGATGAGCAGACCTGGACGTGAAACTGTCCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGCGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTAAGATTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATCGATGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCAGGTTCTGGATCTGGCGGCAAAAGTGGTACTATTGTAACGAATAGAGCAACATGGTTGACAAGTGCTATAGCAGGAATTTGGAGAGTTCCTGCGTCCTCCAACACACCAAAATCAGCCTATATCGCTGGTCATTCCACATACGAATCTGTGGCACCGCAGGGATCAAATGCTTCAATCCGGTCCACAACGGAAAGGATGAAATCACATTCTTTGATTTCTTAA

Protein sequence

MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYIAGHSTYESVAPQGSNASIRSTTERMKSHSLIS*
Homology
[Close]
BLAST of CSPI06G17940 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.1e-71
Identity = 142/227 (62.56%), Postives = 168/227 (74.01%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           E+PASGL +G++MH     +DR G   VKD++TIGSAYDRYLQ  Q+ SFTSGE  T G 
Sbjct: 27  EMPASGLPSGNEMHYLSREEDRSGHPMVKDSKTIGSAYDRYLQG-QVPSFTSGEASTVGA 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVM-SRPPAVSPDLAPNGRNLEYGNHLPVDSMSRP 154
           +G+ R +         +P   L DP  M  R     PDLAPNGR + YG   P+D +SR 
Sbjct: 87  LGLQRGIGG-------LPNHSLSDPSAMIGRHGGGGPDLAPNGRGMNYGFQPPMDPVSRH 146

Query: 155 GRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILC 214
           G E   LPPDAS TLY+EGLP D +RREVAHIFRPFVGY+E+R VSKE+KHR GDPLILC
Sbjct: 147 GPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHR-GDPLILC 206

Query: 215 FVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSG 261
           FVDFANPACAATA+SALQGYK+DE +PES++LRLQFSR+PGPRSG G
Sbjct: 207 FVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYPGPRSGGG 244

[Close]
BLAST of CSPI06G17940 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.5e-71
Identity = 138/229 (60.26%), Postives = 173/229 (75.55%), Query Frame = 0 

Query: 39  SGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMG 98
           SG+++G+++HNY+  ++  G + + DT+ +GSAYDR+LQS  L+SF SGE    G +G  
Sbjct: 32  SGVTSGNEVHNYIAQNN--GHQMLNDTKILGSAYDRFLQSAGLTSFNSGEASVIGGVGFA 91

Query: 99  RPVANRMPVRNRMPGPLLPDPIVMSRPPAV--SPDLAPNGRNLEYGNHLPVDSMSRPGRE 158
           R V         +PG  L DP  M     V   PDL+ NGR++ +G  LP+D++SRPG E
Sbjct: 92  RGV-------GELPGHSLGDPSAMGHLSGVGGGPDLSRNGRDVNFGGQLPIDAVSRPGPE 151

Query: 159 TVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVD 218
           T+PLP DAS+TLYVEGLP DS++REVAHIFRPFVGY+E+R V+KESKHRGGDPLILCFVD
Sbjct: 152 TIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVD 211

Query: 219 FANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGS-GSGGK 265
           FANPACAATA+SALQGYK+DE +PES+YLRLQFSR PG RSG  G  GK
Sbjct: 212 FANPACAATALSALQGYKVDEINPESSYLRLQFSRSPGRRSGGPGPRGK 251

[Close]
BLAST of CSPI06G17940 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 3.3e-61
Identity = 132/255 (51.76%), Postives = 168/255 (65.88%), Query Frame = 0 

Query: 20  GIILNRNYALLSLSAEL--------PASG---LSTGHDMHNYLTSD-DRGGPRSVKDTQT 79
           GI+    Y+L S+S +         P  G   L    DMH+YL+ D DRG P SVKDT++
Sbjct: 174 GILSPGPYSLPSVSPDFFSTIGPTDPQEGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRS 233

Query: 80  IGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPA 139
           IGSAYDRYLQS+Q     S E      +GM R   +     N MPGP + + ++     +
Sbjct: 234 IGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGS-----NMMPGPSMGE-LMAGCGGS 293

Query: 140 VSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 199
           +  D  PNGR++ +G    +DS+ RPGRE  PLPPD SNTLYVEGLP + SRREV+HIFR
Sbjct: 294 LPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFR 353

Query: 200 PFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRL 259
           PFVGY+E+R V+++SKHR GDP +LCFVDF N ACAATA+SALQ Y++DE +P+S  LRL
Sbjct: 354 PFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRL 413

Query: 260 QFSRHPGPRSGSGSG 263
           QF R+PGPR G   G
Sbjct: 414 QFFRNPGPRPGQRGG 419

[Close]
BLAST of CSPI06G17940 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 6.5e-49
Identity = 115/224 (51.34%), Postives = 140/224 (62.50%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           E P+S ++ GH    Y   +D      V DT+TIGSAYDRYLQSVQ     SGE    G 
Sbjct: 28  EAPSSTMTIGHGGGYYPRDED----LDVPDTRTIGSAYDRYLQSVQ-----SGE---GGS 87

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           + MGR           +      D  ++ R   +  D  PNG  + +    PV      G
Sbjct: 88  VSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGVLPLDHGPNGHTIGFDPPEPV------G 147

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           R    LP DASNTLYVEGLP + SRREVAHIFRPFVGY+E+R V+K+SKHR GDP++LCF
Sbjct: 148 RRN--LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCF 207

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSG 259
           VDF NPACAATA+SALQGY++DE + +S +LRLQFSR PG R G
Sbjct: 208 VDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPG 228

[Close]
BLAST of CSPI06G17940 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-27
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 0 

Query: 150 MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDP 209
           M   GR   PLPPDAS+TLY+EGLP + +RREV+HIFRPFVG++E+R V+KES+H GGDP
Sbjct: 22  MGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDP 81

Query: 210 LILCFVDFANPACAATAMSALQGYKIDE 238
            +LCFVDF NPA A  A+ ALQG+  D+
Sbjct: 82  HVLCFVDFDNPAQATIALEALQGHVTDD 109

[Close]
BLAST of CSPI06G17940 vs. ExPASy TrEMBL
Match: A0A0A0KCN5 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 1.0e-174
Identity = 306/310 (98.71%), Postives = 307/310 (99.03%), Query Frame = 0 

Query: 1   MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPR 60
           MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPR
Sbjct: 1   MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPR 60

Query: 61  SVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPI 120
           SVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV NRMPGPLLPDPI
Sbjct: 61  SVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPI 120

Query: 121 VMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRR 180
           VMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRR
Sbjct: 121 VMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRR 180

Query: 181 EVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDP 240
           EVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK+DEQDP
Sbjct: 181 EVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDP 240

Query: 241 ESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYIAG 300
           ESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYI G
Sbjct: 241 ESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYIVG 300

Query: 301 HSTYESVAPQ 311
           HSTYESVAPQ
Sbjct: 301 HSTYESVAPQ 310

[Close]
BLAST of CSPI06G17940 vs. ExPASy TrEMBL
Match: A0A1S3B4F0 (RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.0e-126
Identity = 223/230 (96.96%), Postives = 225/230 (97.83%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           ELPASGLSTGHDMHNYL SDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  ELPASGLSTGHDMHNYLASDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           MGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAPNGRN+EYGNHLPVDSMSRPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDSMSRPG 146

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           VDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSG GS GK
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGFGSSGK 256

[Close]
BLAST of CSPI06G17940 vs. ExPASy TrEMBL
Match: A0A6J1CKA2 (RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 6.6e-121
Identity = 211/230 (91.74%), Postives = 222/230 (96.52%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           ELP+SGL TGH+MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSF SGEVPTHG+
Sbjct: 27  ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           MGM RPVANRMPV +RMPGP +PDP+VMSRPPAVSPDLAPNGRN+EYGNHLP+DSM+RPG
Sbjct: 87  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 146

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           RETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           VDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 256

[Close]
BLAST of CSPI06G17940 vs. ExPASy TrEMBL
Match: A0A6J1JZU6 (RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489771 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 6.2e-119
Identity = 211/239 (88.28%), Postives = 225/239 (94.14%), Query Frame = 0 

Query: 26  NYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFT 85
           N ALLSLS+E P+SGL   H+MHNY+ +DD GGPR+VKDTQTIGSAYDRYLQSVQLSSFT
Sbjct: 23  NMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFT 82

Query: 86  SGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHL 145
           SGEVPTHGEMGMGRP+ANRMP+ NRMPGPLLPDP+VMSRP AVSPDLA NGRN+EYGNHL
Sbjct: 83  SGEVPTHGEMGMGRPLANRMPIGNRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYGNHL 142

Query: 146 PVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHR 205
           PVDS +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRPFVGYKELR V+KESKHR
Sbjct: 143 PVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHR 202

Query: 206 GGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           GGDPLILCFVDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 203 GGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 261

[Close]
BLAST of CSPI06G17940 vs. ExPASy TrEMBL
Match: A0A6J1FKI7 (RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444852 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.5e-117
Identity = 209/239 (87.45%), Postives = 223/239 (93.31%), Query Frame = 0 

Query: 26  NYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFT 85
           N ALLSLS+E P+SGL   H+MHNY+ +DD GGPR+VKDTQTIGSAYDRYLQSVQ SSFT
Sbjct: 23  NMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQPSSFT 82

Query: 86  SGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHL 145
           SGEVPTHGEMGMGRP+ANRMP+ NRMPGPLLPDP+VMSRP AVSPDLA NGRN+EY NHL
Sbjct: 83  SGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHL 142

Query: 146 PVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHR 205
           PVDS +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRPFVGYKELR V+KESKHR
Sbjct: 143 PVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHR 202

Query: 206 GGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           GGDPLILCFVDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 203 GGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 261

[Close]
BLAST of CSPI06G17940 vs. NCBI nr
Match: XP_031743541.1 (RNA-binding protein 2 isoform X7 [Cucumis sativus])

HSP 1 Score: 495.4 bits (1274), Expect = 3.9e-136
Identity = 241/244 (98.77%), Postives = 242/244 (99.18%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           MGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRAT 274
           VDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRAT
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRAT 266

Query: 275 WLTS 279
           WLTS
Sbjct: 267 WLTS 270

[Close]
BLAST of CSPI06G17940 vs. NCBI nr
Match: XP_031743537.1 (RNA-binding protein 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 5.2e-128
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           MGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           VDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 256

[Close]
BLAST of CSPI06G17940 vs. NCBI nr
Match: KAE8647163.1 (hypothetical protein Csa_018814 [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 5.2e-128
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           MGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           VDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 256

[Close]
BLAST of CSPI06G17940 vs. NCBI nr
Match: XP_031743540.1 (RNA-binding protein 2 isoform X6 [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 5.2e-128
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           MGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           VDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 256

[Close]
BLAST of CSPI06G17940 vs. NCBI nr
Match: XP_031743542.1 (RNA-binding protein 2 isoform X8 [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 5.2e-128
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           MGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK 265
           VDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 256

[Close]
BLAST of CSPI06G17940 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 236.9 bits (603), Expect = 2.4e-62
Identity = 132/255 (51.76%), Postives = 168/255 (65.88%), Query Frame = 0 

Query: 20  GIILNRNYALLSLSAEL--------PASG---LSTGHDMHNYLTSD-DRGGPRSVKDTQT 79
           GI+    Y+L S+S +         P  G   L    DMH+YL+ D DRG P SVKDT++
Sbjct: 174 GILSPGPYSLPSVSPDFFSTIGPTDPQEGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRS 233

Query: 80  IGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPA 139
           IGSAYDRYLQS+Q     S E      +GM R   +     N MPGP + + ++     +
Sbjct: 234 IGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGS-----NMMPGPSMGE-LMAGCGGS 293

Query: 140 VSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 199
           +  D  PNGR++ +G    +DS+ RPGRE  PLPPD SNTLYVEGLP + SRREV+HIFR
Sbjct: 294 LPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFR 353

Query: 200 PFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRL 259
           PFVGY+E+R V+++SKHR GDP +LCFVDF N ACAATA+SALQ Y++DE +P+S  LRL
Sbjct: 354 PFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRL 413

Query: 260 QFSRHPGPRSGSGSG 263
           QF R+PGPR G   G
Sbjct: 414 QFFRNPGPRPGQRGG 419

[Close]
BLAST of CSPI06G17940 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 236.5 bits (602), Expect = 3.1e-62
Identity = 123/218 (56.42%), Postives = 155/218 (71.10%), Query Frame = 0 

Query: 46  DMHNYLTSD-DRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANR 105
           DMH+YL+ D DRG P SVKDT++IGSAYDRYLQS+Q     S E      +GM R   + 
Sbjct: 43  DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGS- 102

Query: 106 MPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDA 165
               N MPGP + + ++     ++  D  PNGR++ +G    +DS+ RPGRE  PLPPD 
Sbjct: 103 ----NMMPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDV 162

Query: 166 SNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAA 225
           SNTLYVEGLP + SRREV+HIFRPFVGY+E+R V+++SKHR GDP +LCFVDF N ACAA
Sbjct: 163 SNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAA 222

Query: 226 TAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSG 263
           TA+SALQ Y++DE +P+S  LRLQF R+PGPR G   G
Sbjct: 223 TALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRGG 251

[Close]
BLAST of CSPI06G17940 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 196.1 bits (497), Expect = 4.6e-50
Identity = 115/224 (51.34%), Postives = 140/224 (62.50%), Query Frame = 0 

Query: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94
           E P+S ++ GH    Y   +D      V DT+TIGSAYDRYLQSVQ     SGE    G 
Sbjct: 28  EAPSSTMTIGHGGGYYPRDED----LDVPDTRTIGSAYDRYLQSVQ-----SGE---GGS 87

Query: 95  MGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154
           + MGR           +      D  ++ R   +  D  PNG  + +    PV      G
Sbjct: 88  VSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGVLPLDHGPNGHTIGFDPPEPV------G 147

Query: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCF 214
           R    LP DASNTLYVEGLP + SRREVAHIFRPFVGY+E+R V+K+SKHR GDP++LCF
Sbjct: 148 RRN--LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCF 207

Query: 215 VDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSG 259
           VDF NPACAATA+SALQGY++DE + +S +LRLQFSR PG R G
Sbjct: 208 VDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPG 228

[Close]
BLAST of CSPI06G17940 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 169.1 bits (427), Expect = 6.0e-42
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 0 

Query: 118 DPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDS 177
           D  ++ R   +  D  PNG  + +    PV      GR    LP DASNTLYVEGLP + 
Sbjct: 42  DDFMLRRGGVLPLDHGPNGHTIGFDPPEPV------GRRN--LPSDASNTLYVEGLPSNC 101

Query: 178 SRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDE 237
           SRREVAHIFRPFVGY+E+R V+K+SKHR GDP++LCFVDF NPACAATA+SALQGY++DE
Sbjct: 102 SRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDE 161

Query: 238 QDPESNYLRLQFSRHPGPRSG 259
            + +S +LRLQFSR PG R G
Sbjct: 162 NESDSKFLRLQFSRKPGSRPG 174

[Close]
BLAST of CSPI06G17940 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-07
Identity = 30/107 (28.04%), Postives = 56/107 (52.34%), Query Frame = 0 

Query: 134 PNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYK 193
           PNG   +  N +PV      G++T+P     +N L++  LP +++   +  +F  + G+K
Sbjct: 129 PNGATTQ--NGMPVPPFQPSGQDTMP----PNNILFIHNLPIETNSMMLQLLFEQYPGFK 188

Query: 194 ELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDP 241
           E+R +  +          + FV++ +   ++ AM ALQG+KI  Q+P
Sbjct: 189 EIRMIEAKPG--------IAFVEYEDDVQSSMAMQALQGFKITPQNP 221

The following BLAST results are available for this feature:
BLAST of CSPI06G17940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8H0P82.1e-7162.56RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1[more]
G7ID193.5e-7160.26RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1[more]
F4HWF93.3e-6151.76Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE... [more]
A1A6K66.5e-4951.34Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE... [more]
Q6JB111.8e-2763.64Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1[more]
BLAST of CSPI06G17940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCN51.0e-17498.71RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV... [more]
A0A1S3B4F04.0e-12696.96RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1[more]
A0A6J1CKA26.6e-12191.74RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 S... [more]
A0A6J1JZU66.2e-11988.28RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148977... [more]
A0A6J1FKI71.5e-11787.45RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444... [more]
BLAST of CSPI06G17940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031743541.13.9e-13698.77RNA-binding protein 2 isoform X7 [Cucumis sativus][more]
XP_031743537.15.2e-12898.70RNA-binding protein 2 isoform X3 [Cucumis sativus][more]
KAE8647163.15.2e-12898.70hypothetical protein Csa_018814 [Cucumis sativus][more]
XP_031743540.15.2e-12898.70RNA-binding protein 2 isoform X6 [Cucumis sativus][more]
XP_031743542.15.2e-12898.70RNA-binding protein 2 isoform X8 [Cucumis sativus][more]
BLAST of CSPI06G17940 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G21320.12.4e-6251.76nucleotide binding;nucleic acid binding [more]
AT1G21320.23.1e-6256.42nucleotide binding;nucleic acid binding [more]
AT1G76940.14.6e-5051.34RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G76940.26.0e-4259.57RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G06960.11.7e-0728.04RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 167..243
e-value: 4.3E-5
score: 32.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 168..237
e-value: 4.1E-9
score: 36.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 166..252
score: 11.639343
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 162..253
e-value: 1.7E-18
score: 68.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..267
NoneNo IPR availablePANTHERPTHR10501:SF53NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATEDcoord: 11..264
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 11..264
NoneNo IPR availableCDDcd12420RRM_RBPMS_likecoord: 166..248
e-value: 1.49315E-32
score: 114.289
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 142..262

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G17940.1CSPI06G17940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding