CSPI06G16390 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G16390
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA polymerase epsilon subunit C
Location	Chr6: 14775127 .. 14778057 (-)
RNA-Seq Expression	CSPI06G16390
Synteny	CSPI06G16390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGAGCAAAGAAGTGGGAACCTCCAAGCCATCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGATATTTCTAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAACCACGCCTTAGCTGTTTCTGCTCCAGGAGCCTCAGCCTCTGAGGACGACGATGCCGCCGATGATGACAAAGCCGAAACCACAAGTAGAAAATCTAATACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATCGTTATGCCGCAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGTAAGCATTTAAACACCATCACTAACGGACGAACGGACCTAAAATTGTCCAATTTTAGCTCTATTGAAGAATTAGGTATTTTTCTTATAAAATTGGGTTTTCTGTGTCTGTAAACTTCTTAATTGTTGCAGGAGATGTTTCTCGTACAATTTTGCAAAGATGCATATGCATGTTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTTTTCTCTATTTTATTGTTATATGTTCCATGTTCATTTGCATCTCTTGCATGAACTCATACGGTTTTTCCTTTTTTGCCCTTCTTGTCAGTTTTCTATAATGAAAGTTAGACCTGTGAACATATTTAAAAAAGGGTCAAACTTGGACCTGAAAACAGTTGATTGGATTCCAGCTCCACTATCTTTCATGGTGATGACGGGGCTTTACCCTTTTATAATCGAAACTGTTAACATGATGGTGATCTAATGTCATGATGGTCATAGTTTAACACGGATTGTGACCTTAGATTTAGGTTACAACAATTACTTGGTCAAGGGACTTGAATTATGTTGTAGAGGAGTACCGGCTTATACTATCATAACAAATTTCTACCGCGGCTGAATCCAGCCTTTCGATAAATCATTTCATTAAGCTACATTATGTCTGGCTGGATGATTTACTCACCCTAGCTATGTCTAGCGATAGGTCCCCCAATAAGTTCACATGTATGAGGAGGAACAATAAATAAGCAGTGGTAGCAAAGTTGATAAATTTGATACTTGAGATAAATATAAATTGATTGTGGAGGGGCACTGTAACTGTTATCAGTAGTCTTTCTTTTGGACAACTTCAAGTTAGGTGGCAAGGGGACAGAAAAAGATAGAGGATTGGGGAAGTATGTATTTGGGAGTCGGAAAAGGGGAAGGCAGTGTGAATTTCAATTTGGATCAGGAGAGAAAGCAAAACTCGTGGATCCCTGTTAGGCCTCGAGGGCTGAAGACATATGTGAGGAAGGGCATATTGGGCAAAGGGAAGGAAAAACAGATACATTAATGAGGGAAGGTGGGATCCTGCATGTACTGATGTCAAGAGGCTGATACGTAGGGGAATAAGGCATTTGTGGAAAGGGCAGCTGATATTTTGATGGCATTTATTCACTGGCGTGGGGGAGAAACAGCTTACTCCTGGAGGCCCTGAGTTTTCTTGATTCGTTTATGTTGTTTGGCTATCCTTGCTTATTGTTCTCTTTGGATTACTAGAGAGAAGAAAAACTCGTACATCTGTTCCTTTGTTTTCTTCTGTTAACCACTAATACATAGCAAATTCAGATCTCTCTCATCTGGCTAGGCAATTTTATCGAGACGATGCTGAAATTTTGATGTCTTTTGTTTTACTTATTGTTTCATTTTATCTGCTATTACTATTAGTTTCAATTGTGAGAACTCAGAGGATACTTTTTTTTATTGATTGACCACATTTTGATGGTGGGGAATGTGGGAGGTTGGAAAGGGAAAGAAAGGCCTTTTCTTCTTCCCCGACCAGAGTAACCTATCTAGGTATAAACATATGAATGGATAGTTCTGGAACCATGAGCTCTCTTCTATTAAAATTGGGAGACAGAAAAAGAAAGCCCTGCTTCTTCAAGTTCAAAATAACTGGGAAACAAAACATTTATGCATTGAAAATGAAATGTTAATCCTTAATCTCCATTTTTTCTGTTTCTTGTTTGAGCATCACTGAATTTCTGGGCATGTACAGTTTTCAAAATGTTCAACTCAAGTGTGTCTAGCAAAACTGCCATACTGAGTTTAGGCCAATCAATGGTAATTGGCATATAATTCCTCCCTTTAAGATTGGAGATGTAATTTTCCACCCCCACAATTGTTGTACTAAACAAATGAATATACCAGAATATTTCCTCCCATAGATCAAATGTTTATCCTGCTTGGAATCAAAACTAAACAATTTGCTTCCATGCAATTACCAAACCATTGCTTTAGATGTATTTTCTTGGAAGTAGTAGTAAGATTCTCCTTTGTTGTTGCAGCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGGTATATACAACGTGCCTATAACATAATTCTTAAATACTGCTATTATTGGAATGATGCTTCATCTCTAAACCAAAAGACACCTTATAAAACATCACAAATGTTCTTTTTCATCTCCAGATTTTGTTCCAGAGAAGTTAAAATTTGAAGATGCGTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAGGCTTCTCGATATTTTAATTTGAACATTTCATCTTGTTCTGTGGATGTGTTGTATATTTAGGTATGTCAATGTGAATCTAAGGAAGTTAGATACAACATACAACATACATTTTTTTTAAACTACGTACCTGTAACATGTTTATTGACATCTTAAATCTAATCTAACAATCCATTCTAAC

mRNA sequence

AAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGAGCAAAGAAGTGGGAACCTCCAAGCCATCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGATATTTCTAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAACCACGCCTTAGCTGTTTCTGCTCCAGGAGCCTCAGCCTCTGAGGACGACGATGCCGCCGATGATGACAAAGCCGAAACCACAAGTAGAAAATCTAATACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATCGTTATGCCGCAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGCAAAGATGCATATGCATGTTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAGTTAAAATTTGAAGATGCGTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAGGCTTCTCGATATTTTAATTTGAACATTTCATCTTGTTCTGTGGATGTGTTGTATATTTAGGTATGTCAATGTGAATCTAAGGAAGTTAGATACAACATACAACATACATTTTTTTTAAACTACGTACCTGTAACATGTTTATTGACATCTTAAATCTAATCTAACAATCCATTCTAAC

Coding sequence (CDS)

ATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGAGCAAAGAAGTGGGAACCTCCAAGCCATCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGATATTTCTAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAACCACGCCTTAGCTGTTTCTGCTCCAGGAGCCTCAGCCTCTGAGGACGACGATGCCGCCGATGATGACAAAGCCGAAACCACAAGTAGAAAATCTAATACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATCGTTATGCCGCAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGCAAAGATGCATATGCATGTTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAGTTAAAATTTGAAGATGCGTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAG

Protein sequence

MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVKDNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD*

Homology

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BLAST of CSPI06G16390 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-06
Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 116 EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDR 175
           ++  E+++   P+ RI+ IM+       INQEAL L  KA+E+F+      +Y   +   
Sbjct: 9   DKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKE 68

Query: 176 KKSLAYKHLSSVVSKRKRYDFLSDFVPEKL---KFEDALKERSMAE 219
           KK L Y  L++   + + + FL+D +P+K+   K+   LKE    E
Sbjct: 69  KKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREE 114

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BLAST of CSPI06G16390 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-06
Identity = 35/116 (30.17%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 110 DNRYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYA 169
           D     E+  ++++   P+ RI+ IM+       INQEAL L  KA+E+F+      +Y 
Sbjct: 3   DAAVGKEKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYR 62

Query: 170 CCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKL---KFEDALKERSMAESGKD 223
             +   KK+L Y  L+S     +   FL+D +P+K+   K+   LKE+   E   +
Sbjct: 63  HGSGKAKKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLKEKREEEEDNE 118

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BLAST of CSPI06G16390 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.6e-06
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 127 PMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYA-CCAQDRKKSLAYKHLS 186
           P+ R++ IM+       I  E LFL+ K +E+F+      AY     Q   ++L Y+HLS
Sbjct: 21  PLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80

Query: 187 SVVSKRKRYDFLSDFVPEKLK---FEDALKERSMAESGKD 223
            VV+K K  +FL   VP+K++   F++ L+    A S  D
Sbjct: 81  QVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGSDDD 120

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BLAST of CSPI06G16390 vs. ExPASy Swiss-Prot
Match: P79007 (Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hap5 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.6e-05
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 122 KIYKFPMHRIKKIMR--DENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSL 181
           K    P+ RIKK+M+  D+  +  I+ EA FL  K SE+F+ +    A+    ++++++L
Sbjct: 105 KTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRTL 164

Query: 182 AYKHLSSVVSKRKRYDFLSDFV 202
               +++ VSK + YDFL D +
Sbjct: 165 QRSDIANAVSKSEMYDFLIDII 186

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BLAST of CSPI06G16390 vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 116 EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDR 175
           E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    +++
Sbjct: 67  EHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENK 126

Query: 176 KKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSM 217
           +++L    +++ +S+   +DFL D +P      D LKE  +
Sbjct: 127 RRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

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BLAST of CSPI06G16390 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 220/222 (99.10%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE 120
           DNHALAVSAPGASASED DAAD+DKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CSPI06G16390 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.6e-97
Identity = 207/224 (92.41%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVK 60

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120
           DN  LAVS PG SASEDDDAAD+DKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CSPI06G16390 vs. ExPASy TrEMBL
Match: A0A5A7T1L3 (DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00250 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 7.4e-76
Identity = 170/189 (89.95%), Postives = 174/189 (92.06%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVK 60

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120
           DN  LAVS PG SASEDDDAAD+DKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSV 188
           LAYKHL +V
Sbjct: 181 LAYKHLCNV 187

[Close]

BLAST of CSPI06G16390 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.7e-76
Identity = 173/231 (74.89%), Postives = 189/231 (81.82%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPS------PKAKTHNNARNSDKDISKKKKKKKKISISIST 60
           MASSKKSSTEAKSKE GTSK +       K KT +NA  SDKD+SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVKDNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA 120
           NNGS ++N    +SAP +++ EDD  AD+D+ ETTSRK+N+SKSKKVKRNH K+E+N Y 
Sbjct: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120

Query: 121 AEEE----AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180
            EEE     EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 222
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

[Close]

BLAST of CSPI06G16390 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.2e-75
Identity = 174/236 (73.73%), Postives = 193/236 (81.78%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKK---KKKKISISIS--TN 60
           MASSKKSS+EAKSKE GTSKP+PK KTHNN  N++ +  K  K   KKKK+S + +  T+
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKDNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA- 120
           NGSVK+N  L +SAPG         A++D+ ETTS+  NTSKSKKVKRNH K+E+N YA 
Sbjct: 61  NGSVKENEVLPISAPG--------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAE 120

Query: 121 --------AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKD 180
                   AEEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKD
Sbjct: 121 EEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKD 180

Query: 181 AYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           AYACCAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of CSPI06G16390 vs. NCBI nr
Match: XP_004149539.2 (chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 395.6 bits (1015), Expect = 2.9e-106
Identity = 220/222 (99.10%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE 120
           DNHALAVSAPGASASED DAAD+DKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 YKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CSPI06G16390 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 207/224 (92.41%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVK 60

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120
           DN  LAVS PG SASEDDDAAD+DKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CSPI06G16390 vs. NCBI nr
Match: XP_038902902.1 (DNA polymerase epsilon subunit C [Benincasa hispida])

HSP 1 Score: 327.8 bits (839), Expect = 7.3e-86
Identity = 188/224 (83.93%), Postives = 201/224 (89.73%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAKSKE GTSKP+PK KTHNNAR SDKD S KKKKKKK    IST NGSVK
Sbjct: 44  MASSKKSSTEAKSKEAGTSKPTPKTKTHNNARKSDKDDSNKKKKKKK---KISTINGSVK 103

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAA--EEE 120
           DN ALA S PG++++ ++  AD+D+AETTS K NTSKSKKV+RNH K+E+N YAA  EEE
Sbjct: 104 DNEALATSPPGSASASEEVDADEDRAETTSGKPNTSKSKKVQRNHVKKEENGYAAEEEEE 163

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 164 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 223

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 223
           LAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKER+MAESGKD
Sbjct: 224 LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERNMAESGKD 264

[Close]

BLAST of CSPI06G16390 vs. NCBI nr
Match: XP_031743864.1 (DNA polymerase epsilon subunit 4 isoform X2 [Cucumis sativus] >KAE8647059.1 hypothetical protein Csa_023035 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 8.1e-85
Identity = 182/184 (98.91%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE 120
           DNHALAVSAPGASASED DAAD+DKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHL 185
           YKHL
Sbjct: 181 YKHL 184

[Close]

BLAST of CSPI06G16390 vs. NCBI nr
Match: KAA0035335.1 (DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-75
Identity = 170/189 (89.95%), Postives = 174/189 (92.06%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVK 60

Query: 61  DNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120
           DN  LAVS PG SASEDDDAAD+DKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSV 188
           LAYKHL +V
Sbjct: 181 LAYKHLCNV 187

[Close]

BLAST of CSPI06G16390 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20
Identity = 86/224 (38.39%), Postives = 128/224 (57.14%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNAR--NSDKDISKKKKKKKKISISISTNNGS 60
           M SSKK   +    +V  +K S ++K  + +R   +   ++  KKK +   IS S+++ S
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDS 60

Query: 61  VKDNHALAVSAPGASASEDDDAADDDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAAEEE 120
           V++            A   D+A    K+     K    KS  +     K   NR   +  
Sbjct: 61  VEE------------AIRGDEA---KKSNGVVSKRGNGKSVGIP---TKTSKNREEDDGG 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AE+   KFPM+RI++IMR +NS  +I Q+A+FLVNKA+EMF+ +F ++AY    +D+KK 
Sbjct: 121 AEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKF 180

Query: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALK--ERSMAESG 221
           + YKHLSSVVS  +RY+FL+D VPEKLK E AL+  ER M ++G
Sbjct: 181 IHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

[Close]

BLAST of CSPI06G16390 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 )

HSP 1 Score: 48.5 bits (114), Expect = 8.0e-06
Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 116 EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDR 175
           E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    +++
Sbjct: 67  EHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENK 126

Query: 176 KKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSM 217
           +++L    +++ +S+   +DFL D +P      D LKE  +
Sbjct: 127 RRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

[Close]

BLAST of CSPI06G16390 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 )

HSP 1 Score: 48.5 bits (114), Expect = 8.0e-06
Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 116 EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDR 175
           E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    +++
Sbjct: 67  EHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENK 126

Query: 176 KKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSM 217
           +++L    +++ +S+   +DFL D +P      D LKE  +
Sbjct: 127 RRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

[Close]

BLAST of CSPI06G16390 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-05
Identity = 28/99 (28.28%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 112 RYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACC 171
           R   E+  + K ++ P+ RIKKIM+ +     I+ EA  L  KA E+F+++    ++   
Sbjct: 65  RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 124

Query: 172 AQDRKKSLAYKHLSSVVSKRKRYDFLSDFVP-EKLKFED 210
            ++++++L    +++ +++   +DFL D VP E++K E+
Sbjct: 125 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

[Close]

BLAST of CSPI06G16390 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-05
Identity = 28/99 (28.28%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 112 RYAAEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACC 171
           R   E+  + K ++ P+ RIKKIM+ +     I+ EA  L  KA E+F+++    ++   
Sbjct: 65  RQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA 124

Query: 172 AQDRKKSLAYKHLSSVVSKRKRYDFLSDFVP-EKLKFED 210
            ++++++L    +++ +++   +DFL D VP E++K E+
Sbjct: 125 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

The following BLAST results are available for this feature:

BLAST of CSPI06G16390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NRG0	2.7e-06	31.13	Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1...	[more]
Q9JKP8	3.5e-06	30.17	Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=...	[more]
Q9V452	4.6e-06	34.00	Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 ...	[more]
P79007	8.6e-05	32.93	Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q8LCG7	1.1e-04	28.71	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of CSPI06G16390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCQ2	1.4e-106	99.10	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]
A0A1S3CKU7	7.6e-97	92.41	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A5A7T1L3	7.4e-76	89.95	DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1CGZ0	9.7e-76	74.89	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]
A0A6J1JF10	2.2e-75	73.73	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CSPI06G16390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149539.2	2.9e-106	99.10	chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]	[more]
XP_008463933.1	1.6e-96	92.41	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_038902902.1	7.3e-86	83.93	DNA polymerase epsilon subunit C [Benincasa hispida]	[more]
XP_031743864.1	8.1e-85	98.91	DNA polymerase epsilon subunit 4 isoform X2 [Cucumis sativus] >KAE8647059.1 hypo...	[more]
KAA0035335.1	1.5e-75	89.95	DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA poly...	[more]

BLAST of CSPI06G16390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	1.5e-20	38.39	nuclear factor Y, subunit C10	[more]
AT1G56170.1	8.0e-06	28.71	nuclear factor Y, subunit C2	[more]
AT1G56170.2	8.0e-06	28.71	nuclear factor Y, subunit C2	[more]
AT5G63470.1	2.3e-05	28.28	nuclear factor Y, subunit C4	[more]
AT5G63470.2	2.3e-05	28.28	nuclear factor Y, subunit C4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 125..184 e-value: 3.0E-15 score: 56.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 84..188 e-value: 3.8E-16 score: 61.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 93..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..118
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 24..184
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 24..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G16390.1	CSPI06G16390.1	mRNA
CSPI06G16390.2	CSPI06G16390.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity