CSPI06G16030 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G16030
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Pol protein
Location	Chr6: 14447406 .. 14447926 (-)
RNA-Seq Expression	CSPI06G16030
Synteny	CSPI06G16030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCGCCATTTGAGGCTTTGTATGGTAAATGTTGTAGATCTCCTATTTGTTGGAATGAGGTTGGTGAACAAAGATTGATGGGTCCTGAGTTGGTTCAACAAATGAAGCTATGCAGAAGATTAGAGCACGTATGCAAACAACGCAGCATAGACAGAAAAGTTATGCTGATGTGAGAGATAAGGTATTCTTGAAGGTAGCACCTATGAAGGGTGTTATGCGTTTTGAAAAGAAAGGGAAGTTGAGTCCTCGTTTCGTTGGACCATTTGAGATTTCAGAGAGAATTGGTGTTGTGGCGTATCGTTTGGCATTACCACCATCTCTCTCTGCAGTTCATAATGTTTTTCATGTTTCGATGTTGAGAAAGTATGTGGCAGATCCATCTCATGTGGTGGACTACGAACCACTAGAGATTGATGAGAATTTGAGCTATGTGGAGCAACTAGTCGAGATTTTGACTAGAGAGGCAGATGCTTCGTAG

mRNA sequence

ATGGAGTTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCGCCATTTGAGGCTTTGTATGCTATGCAGAAGATTAGAGCACGTATGCAAACAACGCAGCATAGACAGAAAAGTTATGCTGATGTGAGAGATAAGGTATTCTTGAAGGTAGCACCTATGAAGGGTGTTATGCGTTTTGAAAAGAAAGGGAAGTTGAGTCCTCGTTTCGTTGGACCATTTGAGATTTCAGAGAGAATTGGTGTTGTGGCGTATCGTTTGGCATTACCACCATCTCTCTCTGCAGTTCATAATGTTTTTCATGTTTCGATGTTGAGAAAGTATGTGGCAGATCCATCTCATGTGGTGGACTACGAACCACTAGAGATTGATGAGAATTTGAGCTATGTGGAGCAACTAGTCGAGATTTTGACTAGAGAGGCAGATGCTTCGTAG

Coding sequence (CDS)

ATGGAGTTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCGCCATTTGAGGCTTTGTATGCTATGCAGAAGATTAGAGCACGTATGCAAACAACGCAGCATAGACAGAAAAGTTATGCTGATGTGAGAGATAAGGTATTCTTGAAGGTAGCACCTATGAAGGGTGTTATGCGTTTTGAAAAGAAAGGGAAGTTGAGTCCTCGTTTCGTTGGACCATTTGAGATTTCAGAGAGAATTGGTGTTGTGGCGTATCGTTTGGCATTACCACCATCTCTCTCTGCAGTTCATAATGTTTTTCATGTTTCGATGTTGAGAAAGTATGTGGCAGATCCATCTCATGTGGTGGACTACGAACCACTAGAGATTGATGAGAATTTGAGCTATGTGGAGCAACTAGTCGAGATTTTGACTAGAGAGGCAGATGCTTCGTAG

Protein sequence

MEFAYNNSFQATIGMAPFEALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTREADAS*

Homology

[Close]

BLAST of CSPI06G16030 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 30/99 (30.30%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 19   EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRF 78
            E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F
Sbjct: 1159 ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSF 1218

Query: 79   VGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY 110
             GPF + ++ G   Y L LP S+  +  + FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CSPI06G16030 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 30/99 (30.30%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 19   EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRF 78
            E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F
Sbjct: 1159 ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSF 1218

Query: 79   VGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY 110
             GPF + ++ G   Y L LP S+  +  + FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CSPI06G16030 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 30/99 (30.30%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 19   EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRF 78
            E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F
Sbjct: 1159 ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSF 1218

Query: 79   VGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY 110
             GPF + ++ G   Y L LP S+  +  + FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CSPI06G16030 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 30/99 (30.30%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 19   EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRF 78
            E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F
Sbjct: 1159 ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSF 1218

Query: 79   VGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY 110
             GPF + ++ G   Y L LP S+  +  + FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CSPI06G16030 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 30/99 (30.30%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 19   EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRF 78
            E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F
Sbjct: 1159 ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSF 1218

Query: 79   VGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY 110
             GPF + ++ G   Y L LP S+  +  + FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CSPI06G16030 vs. ExPASy TrEMBL
Match: A0A5A7TK90 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold795G00780 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.3e-56
Identity = 125/179 (69.83%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1    MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
            MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 1176 MEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELIQSTNEAIQKIRSRM 1235

Query: 61   QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
            QTTQ RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 1236 QTTQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 1295

Query: 121  VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
             VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY EQ VE+L RE
Sbjct: 1296 PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLARE 1354

[Close]

BLAST of CSPI06G16030 vs. ExPASy TrEMBL
Match: A0A5A7UR79 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8628G00010 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.3e-56
Identity = 124/179 (69.27%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 190 MEFAYNNSYQATIGMAPFEALYGKSCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRM 249

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
            T Q RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 250 HTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 309

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
            VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY+EQLVE+L RE
Sbjct: 310 PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYIEQLVEVLARE 368

[Close]

BLAST of CSPI06G16030 vs. ExPASy TrEMBL
Match: A0A5A7TPA9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.3e-56
Identity = 124/179 (69.27%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 170 MEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRM 229

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
            T Q RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 230 HTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 289

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
            VAYRLALPPSLSAVH+VFH+SMLRKYV DPSHVVDYEPLEIDENLSYVEQ VE+L RE
Sbjct: 290 PVAYRLALPPSLSAVHDVFHISMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE 348

[Close]

BLAST of CSPI06G16030 vs. ExPASy TrEMBL
Match: A0A5A7SYV5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00190 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.5e-56
Identity = 124/179 (69.27%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 175 MEFAYNNSYQATIGMAPFEALYSKCCRSHVCCGEVGEQRLMGRELVQSTNEAIQKIRSRM 234

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
           Q  Q RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 235 QAAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 294

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
            VAYRLALPPSLSAVH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L RE
Sbjct: 295 PVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEVLARE 353

[Close]

BLAST of CSPI06G16030 vs. ExPASy TrEMBL
Match: A0A5A7TPB7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00040 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.5e-56
Identity = 125/180 (69.44%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNSFQATI MAPFEALY                             A+QKIR+RM
Sbjct: 165 MEFAYNNSFQATIDMAPFEALYGKCCRSLVCWGEVGEERLMGPKLVQSTNEAIQKIRSRM 224

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
           QT Q RQKSYADVR         DKVFLKVAPM+GV+ FEKKGKLSPRFVGPFEI ERIG
Sbjct: 225 QTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMRGVLHFEKKGKLSPRFVGPFEILERIG 284

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTREA 143
            VAYRLALPPSLS VH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L REA
Sbjct: 285 PVAYRLALPPSLSTVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEVLAREA 344

[Close]

BLAST of CSPI06G16030 vs. NCBI nr
Match: KAA0042366.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 6.8e-56
Identity = 125/179 (69.83%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1    MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
            MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 1176 MEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELIQSTNEAIQKIRSRM 1235

Query: 61   QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
            QTTQ RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 1236 QTTQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 1295

Query: 121  VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
             VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY EQ VE+L RE
Sbjct: 1296 PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLARE 1354

[Close]

BLAST of CSPI06G16030 vs. NCBI nr
Match: KAA0057638.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 6.8e-56
Identity = 124/179 (69.27%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 190 MEFAYNNSYQATIGMAPFEALYGKSCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRM 249

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
            T Q RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 250 HTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 309

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
            VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY+EQLVE+L RE
Sbjct: 310 PVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYIEQLVEVLARE 368

[Close]

BLAST of CSPI06G16030 vs. NCBI nr
Match: KAA0043401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 124/179 (69.27%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 170 MEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRM 229

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
            T Q RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 230 HTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 289

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
            VAYRLALPPSLSAVH+VFH+SMLRKYV DPSHVVDYEPLEIDENLSYVEQ VE+L RE
Sbjct: 290 PVAYRLALPPSLSAVHDVFHISMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE 348

[Close]

BLAST of CSPI06G16030 vs. NCBI nr
Match: KAA0043069.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 125/180 (69.44%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNSFQATI MAPFEALY                             A+QKIR+RM
Sbjct: 165 MEFAYNNSFQATIDMAPFEALYGKCCRSLVCWGEVGEERLMGPKLVQSTNEAIQKIRSRM 224

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
           QT Q RQKSYADVR         DKVFLKVAPM+GV+ FEKKGKLSPRFVGPFEI ERIG
Sbjct: 225 QTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMRGVLHFEKKGKLSPRFVGPFEILERIG 284

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTREA 143
            VAYRLALPPSLS VH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L REA
Sbjct: 285 PVAYRLALPPSLSTVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEVLAREA 344

[Close]

BLAST of CSPI06G16030 vs. NCBI nr
Match: KAA0035748.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 124/179 (69.27%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 1   MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARM 60
           MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM
Sbjct: 175 MEFAYNNSYQATIGMAPFEALYSKCCRSHVCCGEVGEQRLMGRELVQSTNEAIQKIRSRM 234

Query: 61  QTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIG 120
           Q  Q RQKSYADVR         DKVFLKVAPMKGV+RFE++GKLSPRFVGPFEI ERIG
Sbjct: 235 QAAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG 294

Query: 121 VVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE 142
            VAYRLALPPSLSAVH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L RE
Sbjct: 295 PVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEVLARE 353

[Close]

BLAST of CSPI06G16030 vs. TAIR 10
Match: AT1G42190.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 44.7 bits (104), Expect = 7.6e-05
Identity = 21/50 (42.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 86  YRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLV 136
           Y+L LP  + A H VFHVSMLRK +    +V+   P ++ EN+  V  L+
Sbjct: 2   YKLDLPTLMDAFHKVFHVSMLRKCITHQENVISEPPPDLLENMMIVGMLI 51

The following BLAST results are available for this feature:

BLAST of CSPI06G16030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	3.7e-04	30.30	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	3.7e-04	30.30	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.7e-04	30.30	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.7e-04	30.30	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	3.7e-04	30.30	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI06G16030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TK90	3.3e-56	69.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79...	[more]
A0A5A7UR79	3.3e-56	69.27	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8628G00010 P...	[more]
A0A5A7TPA9	7.3e-56	69.27	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 ...	[more]
A0A5A7SYV5	9.5e-56	69.27	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00190 PE...	[more]
A0A5A7TPB7	9.5e-56	69.44	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00040 PE...	[more]

BLAST of CSPI06G16030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042366.1	6.8e-56	69.83	pol protein [Cucumis melo var. makuwa]	[more]
KAA0057638.1	6.8e-56	69.27	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043401.1	1.5e-55	69.27	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043069.1	2.0e-55	69.44	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035748.1	2.0e-55	69.27	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G16030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42190.1	7.6e-05	42.00	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 27..139
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 27..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G16030.1	CSPI06G16030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity