CSPI06G14750 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G14750
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S21
LocationChr6: 12862965 .. 12865180 (+)
RNA-Seq ExpressionCSPI06G14750
SyntenyCSPI06G14750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAACCCTAGTTCTCTTCCTTACCTTTGCTGCCGACTGGTATTAACTATTGGACTTTTTCCCGATTCCTCTAGCTGTTTGTTCATTCGTATGTGTGTTAGAAGTTAAATTTCTTGGCGTTAATTCATCGTTTACTTGCCGAAGCAGGTTTTTATTAGATTTTTGATCAAACATCAAAGCCAAAATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAAGTGCAATATTATACATAGAGAAATCGAACCTGAGCACGGATGAAACCGCAGAGAGCAAAAGTGGAGAATTGGCCTGTGTAGATGCCATTCTCGTCCAAGTGCCCAATGTTAATCTGAACCGAGGCGTGATCCTTGGAAGTAATGAGTCGATTTGTGGCAGAGCTGAAATAACATATCACAAACAAAATTCGTAAAAGAGTTCTAAGAAATAGTAAAAAAAATATATATATATATATTTTTTTTACTATTTCTTAGAACTCTTTTACGAATTTTGTTTGTGATATGTTATTTCAGCTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGTTCGATTTCTCTATGTATAATATTGGCTGCACTTTTTCTTGTTTATTATGTGATTTTTTTAACCACTGGCTGCTTCACTCGCTTCTAAGCATTGTATTATTGGAATTGCTTTCTGTATGTCCATAACTTGATTTATTGTATGAATCGGTAAGGATAATTTTGTGTATGTGTTTATTTCGAATTTAGTTGCTAACCTAAATATTGTTCATGATTTGATGTGCTTCATTTTTATTTTTAAGATTTACATTCTTAGGAAGTTTTCTGTTGACCACTCTTATCATCCATTCAACTATTTTATCCGAGGACTCACAAATCAGCTAATATCCCAAGCCTTGCCGAAATCTTCACATTCGTCAAACCTTGGTCTATAATATTTAATCTTTAATTTAGCTCTCCAGAGAAATCATTATAGCATAGAAAGGAAACGGAAGAGAAATTATGTATTAGTATCATTGATTACAGTTTTTAAATGATATGAAATCATTTAACGGATAGGAAAAGGATCAGATTTGATTCTTATATTTGATTACGATCTCACTCGAACACAGGATGTCATAGAGGTTCTACAAATACGTCCTTTATTTTTGAAGATTCGAGTACGTTGATTTAACATACACAATTCGTGTATGATGTTGATTGTATTACCTTGTGTACTATCTTTCATATGAACATGTGAAGATAATTTTCAACATATAAATTTTTGCAAGGATGGATTTTGATATTTTGAAGTATATCAATTTAGTCTTTTGACATCATTGTTTCCTCCACACAAAATCTCATTGAAGTTAGCGGGTAAAGTTTTACATTAATTACTGTCACAATTCTCAAAAACTTGTTTGTCATACTTCGTACATATTCAGGTATGATTGTTTGAAATCCAAATGTTCTCATTGTAGAGGATAAATAAAACTTAAAGGTTTGGAAACTAAATGAATACTTGTTTGTTTTATAACACGAAGATCGTGTATGTCACGAGTATTAATTTTTAGTATATACAACGAAGTTAATCTCTTGGCTCGATATTTATTCGACAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATCCAAACCTTCTTCTACTTGAAATATTATGTTTCTAATTAAGTTAGTGTTTCATTGAGAATTTATGAATATTGAGAGAGCCTAGCCTGCCTTTTGCTGCTAAAATTTGTAGTTTTTGTTGGAATCTTCATGTGGTGAAGCTGGTTTTTGATAATTTCTTCGTGGATTCATATTTGCGCTCTTCGGTTAATCCATATTTTTCTAGCACTTGGGGATTTTTTTCCTCTTTTAAAATTAAAAGTTTTACTTTCTAACAAGACAGTCAGTAGTAGTGAAAGCAGGAAACGATCTTGTTTCTTGCAATCAAATTTTGATTATTTGAGTTTACTAGTAGTAATATTGTCCAGATTTTAGAATGGTACTTTTTATCATTCAGTCTTTGGTTTTTCTTGATTATGCACTTGTTTACTGCAGTTTTTATGACGAACAACTAATATAAATTACTATTCTGAT

mRNA sequence

ATCAAACCCTAGTTCTCTTCCTTACCTTTGCTGCCGACTGGTTTTTATTAGATTTTTGATCAAACATCAAAGCCAAAATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAACTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATCCAAACCTTCTTCTACTTGAAATATTATGTTTCTAATTAAGTTAGTGTTTCATTGAGAATTTATGAATATTGAGAGAGCCTAGCCTGCCTTTTGCTGCTAAAATTTGTAGTTTTTGTTGGAATCTTCATGTGGTGAAGCTGGTTTTTGATAATTTCTTCGTGGATTCATATTTGCGCTCTTCGGTTAATCCATATTTTTCTAGCACTTGGGGATTTTTTTCCTCTTTTAAAATTAAAAGTTTTACTTTCTAACAAGACAGTCAGTAGTAGTGAAAGCAGGAAACGATCTTGTTTCTTGCAATCAAATTTTGATTATTTGAGTTTACTAGTAGTAATATTGTCCAGATTTTAGAATGGTACTTTTTATCATTCAGTCTTTGGTTTTTCTTGATTATGCACTTGTTTACTGCAGTTTTTATGACGAACAACTAATATAAATTACTATTCTGAT

Coding sequence (CDS)

ATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAACTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAG

Protein sequence

MQNEEGKITELYIPRNSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ*
Homology
[Close]
BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 9.5e-34
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPR  SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 81
          QGDADS +DRLWQKKK E +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-32
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-32
Identity = 65/82 (79.27%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++ +LY+PR  SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQK+KAEV+QQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82

[Close]
BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-31
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGK  +LY+PR  SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RA
Sbjct: 1  MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 81
          QGDADS+LDRLWQKKKAE++Q
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81

[Close]
BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match: Q9SMI2 (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-22
Identity = 49/75 (65.33%), Postives = 65/75 (86.67%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIR 60
          MQN+EGKI +LYIPR  SATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R
Sbjct: 1  MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 61 AQGDADSALDRLWQK 74
          + G++D+AL+RL  K
Sbjct: 61 SMGESDAALNRLCVK 75

[Close]
BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A0A0KHD3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.7e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A6J1CCB6 (40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_004143089.1 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal protein S21-2-like [Benincasa hispida] >KGN47181.1 hypothetical protein Csa_021003 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_022138832.1 (40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribosomal protein S21-2-like [Momordica charantia] >XP_022138834.1 40S ribosomal protein S21-2-like [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 2.2e-35
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKKAEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_022138287.1 (40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal protein S21-2 [Momordica charantia] >XP_022138289.1 40S ribosomal protein S21-2 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 6.3e-35
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. NCBI nr
Match: XP_022930553.1 (40S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_023513574.1 40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo] >KAG6593967.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026309.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 8.2e-35
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPR  SATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of CSPI06G14750 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 143.7 bits (361), Expect = 6.7e-35
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPR  SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQ 81
          QGDADS +DRLWQKKK E +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of CSPI06G14750 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 140.2 bits (352), Expect = 7.4e-34
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of CSPI06G14750 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 140.2 bits (352), Expect = 7.4e-34
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKAEVRQQ 82
          QGDADS +DRLWQKKK E +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

The following BLAST results are available for this feature:
BLAST of CSPI06G14750 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E9029.5e-3482.7240S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2[more]
Q9M3371.0e-3278.0540S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1[more]
P356873.0e-3279.2740S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3... [more]
Q418523.4e-3177.7840S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1[more]
Q9SMI24.9e-2265.3340S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1[more]
BLAST of CSPI06G14750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHD34.7e-3697.5640S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_6G194160 PE=3 SV=1[more]
A0A6J1CCB61.0e-3596.3440S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009905 PE=3 SV... [more]
A0A1S4DSM11.4e-3596.3440S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1[more]
A0A5D3CXC91.4e-3596.3440S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0L7W31.4e-3596.3440S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1[more]
BLAST of CSPI06G14750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143089.19.7e-3697.5640S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal prot... [more]
XP_022138832.12.2e-3596.3440S ribosomal protein S21-2-like [Momordica charantia] >XP_022138833.1 40S ribos... [more]
XP_004134210.22.8e-3596.3440S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib... [more]
XP_022138287.16.3e-3595.1240S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal ... [more]
XP_022930553.18.2e-3593.9040S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S riboso... [more]
BLAST of CSPI06G14750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27700.16.7e-3582.72Ribosomal protein S21e [more]
AT3G53890.17.4e-3478.05Ribosomal protein S21e [more]
AT3G53890.27.4e-3478.05Ribosomal protein S21e [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038579Ribosomal protein S21e superfamilyGENE3D3.30.1230.20coord: 1..80
e-value: 6.8E-38
score: 130.4
IPR001931Ribosomal protein S21ePFAMPF01249Ribosomal_S21ecoord: 1..75
e-value: 4.4E-34
score: 116.4
IPR001931Ribosomal protein S21ePIRSFPIRSF002148RPS21ecoord: 1..81
e-value: 1.2E-33
score: 113.0
IPR001931Ribosomal protein S21ePANTHERPTHR1044240S RIBOSOMAL PROTEIN S21coord: 1..81
NoneNo IPR availablePANTHERPTHR10442:SF1340S RIBOSOMAL PROTEIN S21coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G14750.2CSPI06G14750.2mRNA
CSPI06G14750.1CSPI06G14750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome