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CSPI06G10560 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTATAAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATTTTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCAAAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTATAAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATTTTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCAAAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTATAAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATTTTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCAAAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLAKEEKNKNAKEGSNIQNVSNIRGGE* Homology
BLAST of CSPI06G10560 vs. ExPASy TrEMBL
Match: A0A5D3BZ05 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002070 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28 Identity = 65/126 (51.59%), Postives = 94/126 (74.60%), Query Frame = 0
BLAST of CSPI06G10560 vs. ExPASy TrEMBL
Match: A0A5D3DE46 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold836G00080 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 4.6e-28 Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 0
BLAST of CSPI06G10560 vs. ExPASy TrEMBL
Match: A0A5A7SND8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002910 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 3.4e-23 Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 0
BLAST of CSPI06G10560 vs. ExPASy TrEMBL
Match: A0A5D3BWX9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00130 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 4.4e-23 Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 0
BLAST of CSPI06G10560 vs. ExPASy TrEMBL
Match: A0A5A7TTP8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00410 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22 Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 0
BLAST of CSPI06G10560 vs. NCBI nr
Match: KAE8646859.1 (hypothetical protein Csa_020892 [Cucumis sativus]) HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49 Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0
BLAST of CSPI06G10560 vs. NCBI nr
Match: TYK04983.1 (uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]) HSP 1 Score: 134.4 bits (337), Expect = 7.2e-28 Identity = 65/126 (51.59%), Postives = 94/126 (74.60%), Query Frame = 0
BLAST of CSPI06G10560 vs. NCBI nr
Match: KAA0033814.1 (uncharacterized protein E6C27_scaffold1735G00090 [Cucumis melo var. makuwa] >TYK21856.1 uncharacterized protein E5676_scaffold836G00080 [Cucumis melo var. makuwa]) HSP 1 Score: 134.0 bits (336), Expect = 9.4e-28 Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 0
BLAST of CSPI06G10560 vs. NCBI nr
Match: WP_217833235.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 119.4 bits (298), Expect = 2.4e-23 Identity = 54/100 (54.00%), Postives = 74/100 (74.00%), Query Frame = 0
BLAST of CSPI06G10560 vs. NCBI nr
Match: KAA0025975.1 (uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa]) HSP 1 Score: 117.9 bits (294), Expect = 7.0e-23 Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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