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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AGCATTGGGACCCGCACAGGCCTTCAGGACCGGACTCCACAGCCACTGCAACAAGAACTTCCTTCTATTTCTCCCATTTACATTAAACGTCCTTCCTTCTCCATCCCTCATTACCTGCCCTATATACCCACCACCACCGCCGGTCCCATACAGCCCCTCACAGAGGTCACCGATCTCCGTAGGCGCCGTCGGATCCTCGCCCGCGTACCAAGCATTCACCAATGGATTTGA mRNA sequence AGCATTGGGACCCGCACAGGCCTTCAGGACCGGACTCCACAGCCACTGCAACAAGAACTTCCTTCTATTTCTCCCATTTACATTAAACGTCCTTCCTTCTCCATCCCTCATTACCTGCCCTATATACCCACCACCACCGCCGGTCCCATACAGCCCCTCACAGAGGTCACCGATCTCCGTAGGCGCCGTCGGATCCTCGCCCGCGTACCAAGCATTCACCAATGGATTTGA Coding sequence (CDS) AGCATTGGGACCCGCACAGGCCTTCAGGACCGGACTCCACAGCCACTGCAACAAGAACTTCCTTCTATTTCTCCCATTTACATTAAACGTCCTTCCTTCTCCATCCCTCATTACCTGCCCTATATACCCACCACCACCGCCGGTCCCATACAGCCCCTCACAGAGGTCACCGATCTCCGTAGGCGCCGTCGGATCCTCGCCCGCGTACCAAGCATTCACCAATGGATTTGA Protein sequence SIGTRTGLQDRTPQPLQQELPSISPIYIKRPSFSIPHYLPYIPTTTAGPIQPLTEVTDLRRRRRILARVPSIHQWI*
Homology
BLAST of CSPI06G09660 vs. ExPASy TrEMBL
Match: A0A5A7RKG3 (Glutaredoxin family protein OS=Striga asiatica OX=4170 GN=STAS_35577 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 5.3e-13 Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0
Query: 2 IGTRTGLQDRTPQPLQQELPSISPIYIKRPSFSIPHYLPYIPTTTAGPIQPLTEVTDLRR 61
+G R GL+ RTP PL Q+ P + ++RP ++PH+LP +P A P+QPL +V DLRR
Sbjct: 59 VGPRAGLEHRTPNPLHQKPPPPPAVQVERPPAAVPHHLPNVPAAAARPVQPLAQVPDLRR 118
Query: 62 RRRILARVPSIHQ 75
RRR+LA VP + Q
Sbjct: 119 RRRVLAGVPRVDQ 131
BLAST of CSPI06G09660 vs. NCBI nr
Match: GER57757.1 (glutaredoxin family protein [Striga asiatica]) HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12 Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0
Query: 2 IGTRTGLQDRTPQPLQQELPSISPIYIKRPSFSIPHYLPYIPTTTAGPIQPLTEVTDLRR 61
+G R GL+ RTP PL Q+ P + ++RP ++PH+LP +P A P+QPL +V DLRR
Sbjct: 59 VGPRAGLEHRTPNPLHQKPPPPPAVQVERPPAAVPHHLPNVPAAAARPVQPLAQVPDLRR 118
Query: 62 RRRILARVPSIHQ 75
RRR+LA VP + Q
Sbjct: 119 RRRVLAGVPRVDQ 131
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7RKG3 | 5.3e-13 | 49.32 | Glutaredoxin family protein OS=Striga asiatica OX=4170 GN=STAS_35577 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| GER57757.1 | 1.1e-12 | 49.32 | glutaredoxin family protein [Striga asiatica] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..21 |
Relationships
The following mRNA feature(s) are a part of this gene:
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