CSPI06G09350 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G09350
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type domain-containing protein
Location	Chr6: 7919574 .. 7921842 (-)
RNA-Seq Expression	CSPI06G09350
Synteny	CSPI06G09350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGAAGGTGATGAGATAACGTCACAAATTGGCAGAGTTACTTAAATTCTCTTTTAGTGGCAGTTTGAAACTTTGATTGAGGAAGGGCTTCCACACCTTGGCTCTCAGCCGATCCATACAAATCCCACAAAAGGAAACCCCAAGAGATGGAAAAAAGATTTGAATAGTAAAGCTTAACTCATGATATAAAGTAACCATGGTTTTGAGGTTTTGGGTATGGCAGAGTGTGGCAGGAGAGACAGAGTTAACCATGGTTACAGAACGTGGGTTAGATTCTCCTTCAGAACCGGAGAGGTAGGTTTGGGGTTTGTCGAGCTCGAGAACTTTACAGGAAGAAGAAGGCTGCCCCTGTCTCTCTGTATAAAATCATCAACAACACATCTCTCTTTCTTTGTCATTAACAAAAACATACAAAAAGGGAAATGAAGATCAACTTCTCACCGATTCTGTGAATCTCGATCCTTTCTTACATCTTCTCTTCTTCATAATCTCTCTTTTGCTCATTCTTTTGAAACCCATCTCTTTCTGATTTTGGTATGCTTTTCTTCTTGCGTTTCCACAATTTGCTCTGTTTTTCTAGATTGGGATTGTGATCTTGCTTTCATTTGCTGATTTGGGTTCTCGAGGTTTTTGGTTCTGTTGCCGGATTTTCTGTCGGAATTTGCAAATTTAGAGTTGGCTCTCCTTGGATTCTTTTACATGGTTTTGGATTTGATCCGTGTGGAATTGATTTTCCCCTGCATCTTTTGTGTTCTTATTCTTGATCAATCTTTCATAGTTTCTGGGTTGTTTCTGAGTAAATCTATTGCCCTAATCTTGATGTTCAATAATGGAAGCTCTTGGTATATTCTGTTTACCGTGTATGCGTGCGTGCTGGCGGTTGGAGTACGCTTTTTGAAGAAATAAATGGAAACTTTTGATGGTTCTATTCAATGTTCTTGACTCTTGCATCTAAGCAGATCTTTACACAAGAAGTTTCTATTTCCAGATGGATTTTTTTTTGTTTTCATCAATCTTCATTTTAATTCCCTGTTGGGAGCTAGGATCGAAAAGGAAGGAATACATTCATTTATTAATGTATTGAGGTTTTAATTCTATGTCCACTGTTGAATATTTTGGTTGTCTGTAGGTTGTTTTTTTTTGTTTTTTCAATTTTTTTTTTTTAATTTTCTTCTGTCAAACTGAGATTTTCCTCCGCTCTTCATCGGTCAACAGATTTCGCTCTTTTTTTCTTTTTCTTTTTCTTTTTTATACAGTGTTTGACGAGCTGCTTTAGTATTCTTCTCTGTTTACAGCATGGAGCTCTAATTCTTCTCTTATCTTCGCCTTTTGCATTTTCAGATCAGATATCGACCAAAGGATCTGACTACAGAACCTTTTGAACTCAGAAGTCAGAACTGTGACGTCTTTTACATCTCCACTTCTTCATATTTCAACACTTATTTTGTACCTAAATTTTGATAACAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGCGTGATCCTTGTAAATACAGCCTTATCCATTTCTATCTTCAAAGGCATAGTTCGGTCAATCCTCCATGTTGTTGGCATCCATCTCTCGTCCTCGCCTACATTACCTTCATCACCGGATTCCATGGAGAATGCTCCTGAATCCATAGAGTTCCATCTTAACCCCAATGGAAGTTACATTGAAGAGTTTCGCAGTCGAATCCCAGCAATTCTTTTCGACAAAGTACGAAGCTGCAAATGGCTTGAACACGATTGCTCAGTTTGCCTAACCCAATTTGAACCCGAATCAGAGATAAATCATTTATCTTGTGGCCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGCCCACTGTGTCGAACTCCGTTAATGCCAGAAGAAGACACAGCTTCCTGCTTTTGGTGAGAGGATTATTAATATGATGGTTGAGGAACTTCTTACCATTGTACAGCAGCATAGTGTAGATAAACTTAAAAAGTGCATCCGCAAGCCATAGCATTTGTACCTTTCATATGCATGAGGAGTTGAAGCGTGATGAGTGTGGTTGGGTCTTAGACCCTTGTTATTTCATTGTAAATATCAAGCTTTCCGCTTTTTGATCTTTTTCCGTTTGGTGTTTATGCAGTCTTGAGACTGGCTTTTACATTTCAAGTTAATGCAGCTACTTCCCTTTATCATCTTTCTCATCGAAATTGCATTACTAAGAACGTTAACATCTCTTTTTCCTGCTCATATTTT

mRNA sequence

AATTGGAAGGTGATGAGATAACGTCACAAATTGGCAGAGTTACTTAAATTCTCTTTTAGTGGCAGTTTGAAACTTTGATTGAGGAAGGGCTTCCACACCTTGGCTCTCAGCCGATCCATACAAATCCCACAAAAGGAAACCCCAAGAGATGGAAAAAAGATTTGAATAGTAAAGCTTAACTCATGATATAAAGTAACCATGGTTTTGAGGTTTTGGGTATGGCAGAGTGTGGCAGGAGAGACAGAGTTAACCATGGTTACAGAACGTGGGTTAGATTCTCCTTCAGAACCGGAGAGGTAGGTTTGGGGTTTGTCGAGCTCGAGAACTTTACAGGAAGAAGAAGGCTGCCCCTGTCTCTCTGTATAAAATCATCAACAACACATCTCTCTTTCTTTGTCATTAACAAAAACATACAAAAAGGGAAATGAAGATCAACTTCTCACCGATTCTGTGAATCTCGATCCTTTCTTACATCTTCTCTTCTTCATAATCTCTCTTTTGCTCATTCTTTTGAAACCCATCTCTTTCTGATTTTGATCAGATATCGACCAAAGGATCTGACTACAGAACCTTTTGAACTCAGAAGTCAGAACTGTGACGTCTTTTACATCTCCACTTCTTCATATTTCAACACTTATTTTGTACCTAAATTTTGATAACAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGCGTGATCCTTGTAAATACAGCCTTATCCATTTCTATCTTCAAAGGCATAGTTCGGTCAATCCTCCATGTTGTTGGCATCCATCTCTCGTCCTCGCCTACATTACCTTCATCACCGGATTCCATGGAGAATGCTCCTGAATCCATAGAGTTCCATCTTAACCCCAATGGAAGTTACATTGAAGAGTTTCGCAGTCGAATCCCAGCAATTCTTTTCGACAAAGTACGAAGCTGCAAATGGCTTGAACACGATTGCTCAGTTTGCCTAACCCAATTTGAACCCGAATCAGAGATAAATCATTTATCTTGTGGCCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGCCCACTGTGTCGAACTCCGTTAATGCCAGAAGAAGACACAGCTTCCTGCTTTTGGTGAGAGGATTATTAATATGATGGTTGAGGAACTTCTTACCATTGTACAGCAGCATAGTGTAGATAAACTTAAAAAGTGCATCCGCAAGCCATAGCATTTGTACCTTTCATATGCATGAGGAGTTGAAGCGTGATGAGTGTGGTTGGGTCTTAGACCCTTGTTATTTCATTGTAAATATCAAGCTTTCCGCTTTTTGATCTTTTTCCGTTTGGTGTTTATGCAGTCTTGAGACTGGCTTTTACATTTCAAGTTAATGCAGCTACTTCCCTTTATCATCTTTCTCATCGAAATTGCATTACTAAGAACGTTAACATCTCTTTTTCCTGCTCATATTTT

Coding sequence (CDS)

ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGCGTGATCCTTGTAAATACAGCCTTATCCATTTCTATCTTCAAAGGCATAGTTCGGTCAATCCTCCATGTTGTTGGCATCCATCTCTCGTCCTCGCCTACATTACCTTCATCACCGGATTCCATGGAGAATGCTCCTGAATCCATAGAGTTCCATCTTAACCCCAATGGAAGTTACATTGAAGAGTTTCGCAGTCGAATCCCAGCAATTCTTTTCGACAAAGTACGAAGCTGCAAATGGCTTGAACACGATTGCTCAGTTTGCCTAACCCAATTTGAACCCGAATCAGAGATAAATCATTTATCTTGTGGCCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGCCCACTGTGTCGAACTCCGTTAATGCCAGAAGAAGACACAGCTTCCTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW*

Homology

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BLAST of CSPI06G09350 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.0e-45
Identity = 95/158 (60.13%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPD-SMENA 60
           MGLSSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS S + PSS   S EN+
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  --PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLEHDCSVCLTQFEPESEINHLS 120
              ES +F +    SY+EEFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEDTAS 153
           CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]

BLAST of CSPI06G09350 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-14
Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 10  SEGVLGVILVNTALSISIFKGIVRSILHVVGI--HLSSSPTLPSSPDSMENAPESIEFHL 69
           +E  L  + V T   +   + IV SI   +G+   L    T P         PE+     
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIPET----R 67

Query: 70  NPNGSYIEEFRSRIPAILFDKV-RSCKWLEHDCSVCLTQFEPESEINHL-SCGHLFHRVC 129
           +P  + +   R  +P I F+++  S + L  +C+VCL +FE E EI  L +C H+FHR C
Sbjct: 68  SPFSALL--IREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSC 127

Query: 130 LEKWLDYWNLTCPLCRTPLMPEE 149
           L++W+D+   TCPLCRTP +P+E
Sbjct: 128 LDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of CSPI06G09350 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-11
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMP 147
           DC VCL++ +   E+  L C H+FH+ CLE WL + N  CPLCR+PL+P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of CSPI06G09350 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE--------- 155
           DC VCL++ +   E+  L C H+FH+ CLE WL  +N TCPLCR+ L+ ++         
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQRSV 144

[Close]

BLAST of CSPI06G09350 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 81  IPAILFDKV--RSCKWLEHDCSVCLTQFEPESEINHLS-CGHLFHRVCLEKWLDYWNLTC 140
           +P   F  V  RS      DC+VCL++FEPE ++  L  C H FH  C++ WL   N TC
Sbjct: 97  LPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWL-VSNQTC 156

Query: 141 PLCRTPLMPEE 149
           PLCR+PL   E
Sbjct: 157 PLCRSPLFASE 166

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BLAST of CSPI06G09350 vs. ExPASy TrEMBL
Match: A0A0A0KAU4 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.5e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]

BLAST of CSPI06G09350 vs. ExPASy TrEMBL
Match: A0A5D3DTM0 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2527G00040 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.5e-83
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL-SSSPTLPSSPDSMENA 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL SSS TLPSSPDSMENA
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 LFHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           LFH VCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156

[Close]

BLAST of CSPI06G09350 vs. ExPASy TrEMBL
Match: A0A1S3BIY9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103490418 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.5e-83
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL-SSSPTLPSSPDSMENA 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL SSS TLPSSPDSMENA
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 LFHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           LFH VCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156

[Close]

BLAST of CSPI06G09350 vs. ExPASy TrEMBL
Match: A0A6J1FXQ9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111448681 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL SSPTLPSSPDSMENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL-SSPTLPSSPDSMENAP 60

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCSVCLTQF P+SEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           FHRVCLEKWLDYWNLTCPLCRTP MPEEDTASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 154

[Close]

BLAST of CSPI06G09350 vs. ExPASy TrEMBL
Match: A0A6J1JEA7 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111483745 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL SSPTLPSSPDSMENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL-SSPTLPSSPDSMENAP 60

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIEFHLNPNG+YIEEFRSRIPAILF+KV SCK LEHDCSVCLTQF P+SEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGNYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           FHRVCLEKWLDYWNLTCPLCRTP MPEEDTASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 154

[Close]

BLAST of CSPI06G09350 vs. NCBI nr
Match: XP_004139989.1 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >XP_031742532.1 probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >XP_031742533.1 probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN46618.1 hypothetical protein Csa_005123 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.0e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]

BLAST of CSPI06G09350 vs. NCBI nr
Match: XP_038900972.1 (probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida] >XP_038900973.1 probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida])

HSP 1 Score: 322.0 bits (824), Expect = 2.8e-84
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHV+G HLSSSPTLPSSPDSMENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVIGFHLSSSPTLPSSPDSMENAP 60

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           FHRVCLEKWLDYWNLTCPLCRTPLM EEDT SCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMSEEDTGSCFW 155

[Close]

BLAST of CSPI06G09350 vs. NCBI nr
Match: XP_008448128.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo] >KAA0060845.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK27107.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 3.1e-83
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL-SSSPTLPSSPDSMENA 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL SSS TLPSSPDSMENA
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENA 60

Query: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120
           PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH
Sbjct: 61  PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGH 120

Query: 121 LFHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           LFH VCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW
Sbjct: 121 LFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156

[Close]

BLAST of CSPI06G09350 vs. NCBI nr
Match: KAG7010803.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.5 bits (789), Expect = 3.2e-80
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL SSPTLPSSPDSMENAP
Sbjct: 92  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL-SSPTLPSSPDSMENAP 151

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCSVCLTQF P+SEINHLSCGHL
Sbjct: 152 ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 211

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           FHRVCLEKWLDYWNLTCPLCRTP MPEEDTASCFW
Sbjct: 212 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 245

[Close]

BLAST of CSPI06G09350 vs. NCBI nr
Match: KAG6570965.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308.5 bits (789), Expect = 3.2e-80
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL SSPTLPSSPDSMENAP
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHL-SSPTLPSSPDSMENAP 60

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120
           ESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCSVCLTQF P+SEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHL 120

Query: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
           FHRVCLEKWLDYWNLTCPLCRTP MPEEDTASCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 154

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BLAST of CSPI06G09350 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 181.8 bits (460), Expect = 4.2e-46
Identity = 95/158 (60.13%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPD-SMENA 60
           MGLSSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS S + PSS   S EN+
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  --PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLEHDCSVCLTQFEPESEINHLS 120
              ES +F +    SY+EEFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEDTAS 153
           CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

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BLAST of CSPI06G09350 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 181.8 bits (460), Expect = 4.2e-46
Identity = 95/158 (60.13%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPD-SMENA 60
           MGLSSLP PSEG+L VILVNTALSISI KGIVRS L +VGI LS S + PSS   S EN+
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  --PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLEHDCSVCLTQFEPESEINHLS 120
              ES +F +    SY+EEFR+R P + F+ +  C K  +++CSVCL++F+ +SEIN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEDTAS 153
           CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLVVVPEDHQLS 158

[Close]

BLAST of CSPI06G09350 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15
Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 10  SEGVLGVILVNTALSISIFKGIVRSILHVVGI--HLSSSPTLPSSPDSMENAPESIEFHL 69
           +E  L  + V T   +   + IV SI   +G+   L    T P         PE+     
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIPET----R 67

Query: 70  NPNGSYIEEFRSRIPAILFDKV-RSCKWLEHDCSVCLTQFEPESEINHL-SCGHLFHRVC 129
           +P  + +   R  +P I F+++  S + L  +C+VCL +FE E EI  L +C H+FHR C
Sbjct: 68  SPFSALL--IREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSC 127

Query: 130 LEKWLDYWNLTCPLCRTPLMPEE 149
           L++W+D+   TCPLCRTP +P+E
Sbjct: 128 LDRWMDHDQKTCPLCRTPFVPDE 144

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BLAST of CSPI06G09350 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-15
Identity = 49/145 (33.79%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60
           MG+S  P  SEGV+ ++++NT +S+S+ K +VRS++++V    + +       D  E++ 
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDH-EDSK 60

Query: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHL-SCGH 120
                 +    S  E   SR         R       DC VCL  F+ E E++ L SC H
Sbjct: 61  RRRRISITHFESLCENRGSR-------NEREAM----DCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHRVCLEKWLDYWNLTCPLCRTPL 145
            FH  CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of CSPI06G09350 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMP 147
           DC VCL++ +   E+  L C H+FH+ CLE WL + N  CPLCR+PL+P
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

The following BLAST results are available for this feature:

BLAST of CSPI06G09350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	6.0e-45	60.13	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	3.2e-14	34.97	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9ZU51	5.6e-11	51.02	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	1.6e-10	41.18	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9LY41	1.8e-09	45.07	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]

BLAST of CSPI06G09350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU4	1.5e-86	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G113550 P...	[more]
A0A5D3DTM0	1.5e-83	98.08	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BIY9	1.5e-83	98.08	probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
A0A6J1FXQ9	1.6e-80	95.48	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JEA7	3.5e-80	94.84	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CSPI06G09350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139989.1	3.0e-86	100.00	probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >XP_031742532.1 pr...	[more]
XP_038900972.1	2.8e-84	97.42	probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida] >XP_038900973.1 ...	[more]
XP_008448128.1	3.1e-83	98.08	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo] >KAA006084...	[more]
KAG7010803.1	3.2e-80	95.48	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
KAG6570965.1	3.2e-80	95.48	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]

BLAST of CSPI06G09350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	4.2e-46	60.13	RING/U-box superfamily protein	[more]
AT2G04240.2	4.2e-46	60.13	RING/U-box superfamily protein	[more]
AT3G61460.1	2.3e-15	34.97	brassinosteroid-responsive RING-H2	[more]
AT1G67856.1	6.6e-15	33.79	RING/U-box superfamily protein	[more]
AT2G01150.1	4.0e-12	51.02	RING-H2 finger protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 5.0E-6 score: 36.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 9.3E-11 score: 41.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.784338
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 66..146 e-value: 1.8E-16 score: 61.6
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..155
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 88..147
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G09350.2	CSPI06G09350.2	mRNA
CSPI06G09350.1	CSPI06G09350.1	mRNA