CSPI06G07020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G07020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 6045446 .. 6046098 (+)
RNA-Seq Expression	CSPI06G07020
Synteny	CSPI06G07020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGTAGATCCAAGGAGACAAAAAAACAGGAAGCAGAAAACCCTAGAAGGTAAGAGTAGTTAAGAAAATCGGTTAAGTTTGTTAAAAAGAAATGGCGAATCGTGGATTATCTACGGTGGAAGTGATGGAAGAAAAAAGGCAAAAGGAATAAGCCAAAACAGAGAAGGCGGCGCCGATGAGGAAGCCGGAGATCGGAGAGATGGCGATAAGGAAAAACCTCAAAGGCAAAGAGCAGCTGCTGCAGATCTATGGAAGCGGAAGGTAAAGGGATTTTCTTTTCTTTCTTTTCTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTGGGTTTTTGGTTACTCACTTTCATACACTAAAAACGAATTTCCTTTTTGGGTTTTTGGTTACTCACTTTCATACACTAAAAACGATTCGCTTTTATTTATATATACAAAAGAAAAATTACGATATTAAATCTCGTCCCTTCGATTACTGGGCCCTACTCTTCATCGGTACCGCCACGTTATACCTAATTCTCAATCAACGGCTAGATCTCCACATGCTTCACGCTTTGCTACGGATGCTTTTGCCGGGTGGGTGGGGTTGTTTGTTTAAAATTACCCGACCTGACCCGGAAAATAATTGTAAAATGGTATTTAATGGTTAA

mRNA sequence

ATGGTAGGTAGATCCAAGGAGACAAAAAAACAGGAAGCAGAAAACCCTAGAAGTGATGGAAGAAAAAAGGCAAAAGGAATAAGCCAAAACAGAGAAGGCGGCGCCGATGAGGAAGCCGGAGATCGGAGAGATGGCGATAAGGAAAAACCTCAAAGGCAAAGAGCAGCTGCTGCAGATCTATGGAAGCGGAAGAAAAATTACGATATTAAATCTCGTCCCTTCGATTACTGGGCCCTACTCTTCATCGGTACCGCCACGTTATACCTAATTCTCAATCAACGGCTAGATCTCCACATGCTTCACGCTTTGCTACGGATGCTTTTGCCGGGTGGGTGGGGTTGTTTGTTTAAAATTACCCGACCTGACCCGGAAAATAATTGTAAAATGGTATTTAATGGTTAA

Coding sequence (CDS)

ATGGTAGGTAGATCCAAGGAGACAAAAAAACAGGAAGCAGAAAACCCTAGAAGTGATGGAAGAAAAAAGGCAAAAGGAATAAGCCAAAACAGAGAAGGCGGCGCCGATGAGGAAGCCGGAGATCGGAGAGATGGCGATAAGGAAAAACCTCAAAGGCAAAGAGCAGCTGCTGCAGATCTATGGAAGCGGAAGAAAAATTACGATATTAAATCTCGTCCCTTCGATTACTGGGCCCTACTCTTCATCGGTACCGCCACGTTATACCTAATTCTCAATCAACGGCTAGATCTCCACATGCTTCACGCTTTGCTACGGATGCTTTTGCCGGGTGGGTGGGGTTGTTTGTTTAAAATTACCCGACCTGACCCGGAAAATAATTGTAAAATGGTATTTAATGGTTAA

Protein sequence

MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADLWKRKKNYDIKSRPFDYWALLFIGTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITRPDPENNCKMVFNG*

Homology

[Close]

BLAST of CSPI06G07020 vs. ExPASy TrEMBL
Match: A0A0A0K9C7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088030 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60
           MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL
Sbjct: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60

Query: 61  WKRKKNYDIKSRPFDYWALLFIGTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120
           WKRKKNYDIKSRPFDYWALLFI TATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR
Sbjct: 61  WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120

Query: 121 PDPENNCKMVFNG 134
           PDPENNCKMVF G
Sbjct: 121 PDPENNCKMVFYG 133

[Close]

BLAST of CSPI06G07020 vs. NCBI nr
Match: KGN46375.1 (hypothetical protein Csa_005510 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60
           MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL
Sbjct: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60

Query: 61  WKRKKNYDIKSRPFDYWALLFIGTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120
           WKRKKNYDIKSRPFDYWALLFI TATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR
Sbjct: 61  WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120

Query: 121 PDPENNCKMVFNG 134
           PDPENNCKMVF G
Sbjct: 121 PDPENNCKMVFYG 133

The following BLAST results are available for this feature:

BLAST of CSPI06G07020 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G07020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9C7	1.4e-66	98.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088030 PE=4 SV=1	[more]

BLAST of CSPI06G07020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46375.1	3.0e-66	98.50	hypothetical protein Csa_005510 [Cucumis sativus]	[more]

BLAST of CSPI06G07020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G07020.1	CSPI06G07020.1	mRNA