CSPI06G05200 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G05200
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Cytochrome c oxidase assembly factor 4-like protein
Location	Chr6: 4761499 .. 4762374 (-)
RNA-Seq Expression	CSPI06G05200
Synteny	CSPI06G05200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAGCAATTGCAACACTAAATTAAGCACAAATATACAAACCCTAATCTATATGAAAAAGAAGAGAAGAAATTCTATAATAAATCGCCAACTTTGAGCAGTTCAAACTTATTACGCTAAGAAGTTTGAATTTCGTATAAAATTTGTGTCGAACCTGAAGGAAAAAAAATGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGACGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGTTCTTCTTCTTGGCGGTTCTGTTCGTCGTCTTCTACTTTTTTACGTTCTGCTAAAACCCTAAGCCCTAAAATGCAAATTGATGTTTATTAACTTCATCCCTATAATTTTCAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGGTATACTGTTCATCTCTCACTGACCATCGTTTTCACCAATTCGATCATTTCTTCTTGTTCTGAATTCTCATTTTGTTCATAGGTTCATCTTTGAATTATTTGTCGTTGCCAAGATCTCTTTCTGTTTCTTACCAATTTGAAATATTAATGTCTATATCGCGCAATTATTTAATTTTTCATATAAAATGACTGTCCTAATCCATTTCCTCGCTGCTAATGGTTTGTCTAGCAGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGAAAATTATTCTGCAAAGGTGCATAATGTAACAAATAATATCTAAGATTTTGTTTTATCTTGTTTAGATGTATTTTGTAACATCTATAAGGTTGACTGTTCTTCCAAGTCTTTGCCATTATGTAGAGATTATTTCAGATTGAAC

mRNA sequence

GTTAGCAATTGCAACACTAAATTAAGCACAAATATACAAACCCTAATCTATATGAAAAAGAAGAGAAGAAATTCTATAATAAATCGCCAACTTTGAGCAGTTCAAACTTATTACGCTAAGAAGTTTGAATTTCGTATAAAATTTGTGTCGAACCTGAAGGAAAAAAAATGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGACGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGAAAATTATTCTGCAAAGGTGCATAATGTAACAAATAATATCTAAGATTTTGTTTTATCTTGTTTAGATGTATTTTGTAACATCTATAAGGTTGACTGTTCTTCCAAGTCTTTGCCATTATGTAGAGATTATTTCAGATTGAAC

Coding sequence (CDS)

ATGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGACGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGA

Protein sequence

MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSCSERRKSGQRK*

Homology

[Close]

BLAST of CSPI06G05200 vs. ExPASy TrEMBL
Match: A0A0A0KEH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.4e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CSPI06G05200 vs. ExPASy TrEMBL
Match: A0A1S3C8M5 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497907 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.8e-33
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CSPI06G05200 vs. ExPASy TrEMBL
Match: A0A5A7SQI1 (Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001040 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.8e-33
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CSPI06G05200 vs. ExPASy TrEMBL
Match: A0A6J1L1R2 (uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          K+C+ERRK+G  K
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of CSPI06G05200 vs. ExPASy TrEMBL
Match: A0A6J1H3G8 (uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC111460064 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          K+C+ERRK+G  K
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of CSPI06G05200 vs. NCBI nr
Match: XP_004153368.1 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 7.0e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CSPI06G05200 vs. NCBI nr
Match: XP_008458528.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458529.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458530.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_016902266.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >KAA0033444.1 cytochrome c oxidase assembly factor 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CSPI06G05200 vs. NCBI nr
Match: XP_011656645.1 (uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 hypothetical protein Csa_004822 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA-EVQA 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA EVQA
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAVEVQA 60

Query: 61 LKSCSERRKSGQRK 74
          LKSCSERRKSGQRK
Sbjct: 61 LKSCSERRKSGQRK 74

[Close]

BLAST of CSPI06G05200 vs. NCBI nr
Match: XP_038874602.1 (uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 uncharacterized protein LOC120067191 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-30
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPP SPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQAEVQAL
Sbjct: 1  MGKPPNSPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRK GQRK
Sbjct: 61 KSCSERRKPGQRK 73

[Close]

BLAST of CSPI06G05200 vs. NCBI nr
Match: XP_022958916.1 (uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 uncharacterized protein LOC111499062 [Cucurbita maxima] >XP_023548597.1 uncharacterized protein LOC111807214 [Cucurbita pepo subsp. pepo] >KAG7013604.1 hypothetical protein SDJN02_23771 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 7.4e-27
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          K+C+ERRK+G  K
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of CSPI06G05200 vs. TAIR 10
Match: AT5G18920.1 (Cox19-like CHCH family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 12 PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSCSERR 68
          PP H+ DADD+DENVKQL ECSS YLSLQDCL+ +NR+WKSCQ  VQALK C ERR
Sbjct: 19 PPNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQKHVQALKECHERR 74

The following BLAST results are available for this feature:

BLAST of CSPI06G05200 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G05200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEH3	3.4e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1	[more]
A0A1S3C8M5	9.8e-33	98.63	cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX...	[more]
A0A5A7SQI1	9.8e-33	98.63	Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa ...	[more]
A0A6J1L1R2	3.6e-27	84.93	uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062...	[more]
A0A6J1H3G8	3.6e-27	84.93	uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]

BLAST of CSPI06G05200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153368.1	7.0e-33	100.00	cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumi...	[more]
XP_008458528.1	2.0e-32	98.63	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumi...	[more]
XP_011656645.1	1.7e-31	98.65	uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 ...	[more]
XP_038874602.1	2.5e-30	93.15	uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 unchara...	[more]
XP_022958916.1	7.4e-27	84.93	uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 unchar...	[more]

BLAST of CSPI06G05200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18920.1	1.6e-19	75.00	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR48236	COX19-LIKE CHCH FAMILY PROTEIN	coord: 3..72
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 27..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05200.1	CSPI06G05200.1	mRNA