CSPI06G03620 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G03620
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal L18p/L5e family protein
LocationChr6: 3303040 .. 3304085 (+)
RNA-Seq ExpressionCSPI06G03620
SyntenyCSPI06G03620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGAAAATAAAAAAAAAAGGTTAAAAATCAAAATTCCCAAATATAAAAATTATGATTTCCAAATTGTTCAATCAAAGTTCAATGGAAGAAGAGAAGAGTAGAAGGCGATTTTGAAGCCCTAATAAATACGCCGATTTCCTCATCATGTCCGTTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAACCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAGCCTCGACTATTGAGATTGAATTTAGGGCACATATAATTCCTTATCCTTCATGTCGATTAATTATACCAATTTTGACACATTTTTTTTAATCTCTCTCTCTCTCTCGGATTAAAAACTGTAATAATATAAATTGTTTTCATAATTAATTAAAGAAATAGAGAAGAGACCAATTTCCCCCTTGAAATTCAGGCCATTTTATCCTTGACTGATTCGTTGGACTACATACAGATTATACTTGGCTGAAAGAAAAAAGGATTTACATGACACCCAAAATTTTGAGTATAAATTGATATTTTTTTACACAAATTATGGTGTTAGAATTAGTTGTTCTAGACATTGAGGGTTTGTTTTTTAGATGATACGATAATATTTGAAGAAAAGTGATTGAATGAAAAATATAATTTCTTTTTAATGTTTGGTAGGGTGTGATTGGTGTCTGGGGAACGGTTATATGTTATGATAAAAGGGGTTTGGGGAAGGGTAAACCTATGTTATGATAAAAGGTGTTTGGGGATGGG

mRNA sequence

GTTTTGAAAATAAAAAAAAAAGGTTAAAAATCAAAATTCCCAAATATAAAAATTATGATTTCCAAATTGTTCAATCAAAGTTCAATGGAAGAAGAGAAGAGTAGAAGGCGATTTTGAAGCCCTAATAAATACGCCGATTTCCTCATCATGTCCGTTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAACCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAGCCTCGACTATTGAGATTGAATTTAGGGCACATATAATTCCTTATCCTTCATGTCGATTAATTATACCAATTTTGACACATTTTTTTTAATCTCTCTCTCTCTCTCGGATTAAAAACTGTAATAATATAAATTGTTTTCATAATTAATTAAAGAAATAGAGAAGAGACCAATTTCCCCCTTGAAATTCAGGCCATTTTATCCTTGACTGATTCGTTGGACTACATACAGATTATACTTGGCTGAAAGAAAAAAGGATTTACATGACACCCAAAATTTTGAGTATAAATTGATATTTTTTTACACAAATTATGGTGTTAGAATTAGTTGTTCTAGACATTGAGGGTTTGTTTTTTAGATGATACGATAATATTTGAAGAAAAGTGATTGAATGAAAAATATAATTTCTTTTTAATGTTTGGTAGGGTGTGATTGGTGTCTGGGGAACGGTTATATGTTATGATAAAAGGGGTTTGGGGAAGGGTAAACCTATGTTATGATAAAAGGTGTTTGGGGATGGG

Coding sequence (CDS)

ATGTCCGTTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAACCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAG

Protein sequence

MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKLGTGSI*
Homology
BLAST of CSPI06G03620 vs. ExPASy TrEMBL
Match: A0A0A0KE39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGSI 127
           LGTGSI
Sbjct: 121 LGTGSI 126

BLAST of CSPI06G03620 vs. ExPASy TrEMBL
Match: A0A5D3BWW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00630 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGSI 127
           LG GSI
Sbjct: 121 LGKGSI 126

BLAST of CSPI06G03620 vs. ExPASy TrEMBL
Match: A0A1S4DVU4 (uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGSI 127
           LG GSI
Sbjct: 121 LGKGSI 126

BLAST of CSPI06G03620 vs. ExPASy TrEMBL
Match: A0A6J1JZ79 (uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.7e-57
Identity = 114/126 (90.48%), Postives = 122/126 (96.83%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYR  VLPLFDSV+RSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGSI 127
           LG+G+I
Sbjct: 121 LGSGAI 126

BLAST of CSPI06G03620 vs. ExPASy TrEMBL
Match: A0A6J1EVG7 (uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC111436340 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 113/126 (89.68%), Postives = 121/126 (96.03%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  VLPLFDSV+RSGVAV+GAEK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGTGSI 127
           LG+G+I
Sbjct: 121 LGSGAI 126

BLAST of CSPI06G03620 vs. NCBI nr
Match: XP_004140885.1 (uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-61
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGSI 127
           LGTGSI
Sbjct: 121 LGTGSI 126

BLAST of CSPI06G03620 vs. NCBI nr
Match: KAE8646622.1 (hypothetical protein Csa_005380 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 2.0e-59
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGT 124
           LGT
Sbjct: 121 LGT 123

BLAST of CSPI06G03620 vs. NCBI nr
Match: XP_016900104.1 (PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo] >KAA0033043.1 hypothetical protein E6C27_scaffold269G001480 [Cucumis melo var. makuwa] >TYK03458.1 hypothetical protein E5676_scaffold121G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGSI 127
           LG GSI
Sbjct: 121 LGKGSI 126

BLAST of CSPI06G03620 vs. NCBI nr
Match: XP_038884098.1 (uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 9.7e-59
Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS++QNHLLRLVLSCRKITAQVTNP TSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGS 126
           LGTG+
Sbjct: 121 LGTGN 125

BLAST of CSPI06G03620 vs. NCBI nr
Match: XP_038884099.1 (uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 9.7e-59
Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 0

Query: 1   MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MS++QNHLLRLVLSCRKITAQVTNP TSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGS 126
           LGTG+
Sbjct: 121 LGTGN 125

BLAST of CSPI06G03620 vs. TAIR 10
Match: AT2G43310.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-41
Identity = 84/123 (68.29%), Postives = 104/123 (84.55%), Query Frame = 0

Query: 4   NQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK 
Sbjct: 5   HRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKLGT 123
           ASRVGEKLG RL+E+GV  V ID  EE+SRPI++RK VLPLFDSV+R+G+ VDG E+L  
Sbjct: 65  ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQLND 124

Query: 124 GSI 127
            S+
Sbjct: 125 ISV 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KE392.3e-6198.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1[more]
A0A5D3BWW43.6e-5995.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DVU43.6e-5995.24uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=... [more]
A0A6J1JZ795.7e-5790.48uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745... [more]
A0A6J1EVG71.8e-5589.68uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC1114363... [more]
Match NameE-valueIdentityDescription
XP_004140885.14.6e-6198.41uncharacterized protein LOC101204363 [Cucumis sativus][more]
KAE8646622.12.0e-5998.37hypothetical protein Csa_005380 [Cucumis sativus][more]
XP_016900104.17.4e-5995.24PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo] >KAA0033043.1 hyp... [more]
XP_038884098.19.7e-5994.40uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida][more]
XP_038884099.19.7e-5994.40uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT2G43310.11.1e-4168.29Ribosomal L18p/L5e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.100coord: 3..114
e-value: 1.1E-8
score: 37.6
NoneNo IPR availablePANTHERPTHR12899:SF14F14B2.25/F14B2.25coord: 4..123
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 5..89
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 4..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G03620.1CSPI06G03620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome