CSPI06G02680 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02680
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	proline-rich protein 36-like
Location	Chr6: 2139167 .. 2139367 (-)
RNA-Seq Expression	CSPI06G02680
Synteny	CSPI06G02680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Protein sequence

MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTGGGGQTN*

Homology

[Close]

BLAST of CSPI06G02680 vs. ExPASy TrEMBL
Match: A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 67
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]

BLAST of CSPI06G02680 vs. ExPASy TrEMBL
Match: A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.9e-17
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MESSSSSLRK--NNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKS 60
          MESSSSSL+K  NN+ NAKAPRLRL+MNAGDG  IN RHSRP +R R SK NRAPPPKKS
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGGGQTN 67
          TGGGGQTN
Sbjct: 61 TGGGGQTN 68

[Close]

BLAST of CSPI06G02680 vs. ExPASy TrEMBL
Match: A0A0A0L7D2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRL-RLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60
          MESSSS L+KNN DNAKAPRL RL++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 60

Query: 61 GGGGQTN 67
          GGGGQTN
Sbjct: 61 GGGGQTN 60

[Close]

BLAST of CSPI06G02680 vs. ExPASy TrEMBL
Match: A0A6J1EPK7 (proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-06
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          ME SSS+L+ +NNDNAKA  LR   N   GTQINR  S P +R   + TNR PPPKKSTG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRL-SGPSRRANGTPTNRGPPPKKSTG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 61

[Close]

BLAST of CSPI06G02680 vs. NCBI nr
Match: KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]

BLAST of CSPI06G02680 vs. NCBI nr
Match: KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MESSSSSLRK--NNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKS 60
          MESSSSSL+K  NN+ NAKAPRLRL+MNAGDG  IN RHSRP +R R SK NRAPPPKKS
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGGGQTN 67
          TGGGGQTN
Sbjct: 61 TGGGGQTN 68

[Close]

BLAST of CSPI06G02680 vs. NCBI nr
Match: KAE8650564.1 (hypothetical protein Csa_011065, partial [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRL-RLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60
          MESSSS L+KNN DNAKAPRL RL++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 56

Query: 61 GGG 63
          GGG
Sbjct: 61 GGG 56

[Close]

BLAST of CSPI06G02680 vs. NCBI nr
Match: XP_022930152.1 (proline-rich protein 36-like [Cucurbita moschata])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          ME SSS+L+ +NNDNAKA  LR   N   GTQINR  S P +R   + TNR PPPKKSTG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRL-SGPSRRANGTPTNRGPPPKKSTG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 61

The following BLAST results are available for this feature:

BLAST of CSPI06G02680 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G02680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN3	1.0e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1	[more]
A0A5D3DY74	8.9e-17	79.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L7D2	1.1e-11	73.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1	[more]
A0A6J1EPK7	7.1e-06	61.29	proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 ...	[more]

BLAST of CSPI06G02680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646590.1	4.5e-23	100.00	hypothetical protein Csa_005634, partial [Cucumis sativus]	[more]
KAA0048493.1	1.8e-16	79.41	hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828...	[more]
KAE8650564.1	4.9e-09	71.43	hypothetical protein Csa_011065, partial [Cucumis sativus]	[more]
XP_022930152.1	1.5e-05	61.29	proline-rich protein 36-like [Cucurbita moschata]	[more]

BLAST of CSPI06G02680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02680.1	CSPI06G02680.1	mRNA