CSPI06G02540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ATP synthase subunit delta, chloroplastic
Location	Chr6: 1963262 .. 1964409 (-)
RNA-Seq Expression	CSPI06G02540
Synteny	CSPI06G02540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTCCTTTCAATCCAAGCCCTCCATCTCCACCACATAATCCTTTAGCCTTTCTTTAGGTTTCAATTTACCACAAAAAAAACAATTCCTCCTATCCCCCCAAAAACCACACAGAACTCACAAATCCCTCACCGGACCCATCATCAATGGCCGCTCTTCACCAAACCACCGCCTCTCTTCAGGCCAAGCTCCTTCCAACCGCTCGAATCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCTCGCGGACTCCGCCTCGTCCAGCACCGCTCTCACGGCGGCGCAAGAATGTCGGCCACAGCCGCCGGAAGCTACGCTGCAGCACTAGCCGAAGTGGCAGCGTCGAACAACACACTTGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTTGCGGATCAACGGGTGTTCGATTTCTTCGCGAATCCTACGATTAGCGTGGAGAAGAAACAAGCAGTGGTGGATGAAATGGCTTCTTCGTCATCTCTACAGCCGCATTCAGCAAATTTCTTGAAGATCTTGGTGGATGCGAAGAGAATCGACATCCTGAAGGAGATAGTTACGGAGTTTGAATTGGTGTATAACAAGATAACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAATTGGAGCAGCAACATTTGGCGCAAATCGCGAAACAGGTGCAGAAATTGAGTGGCGCGAAGAATGTGAGGATAAAGACGCAGATTGATCCAAGTTTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCCAAACTCATTGATTTGAGTGTTAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGAAATTGAATTGCAAATGCATTTTGTGATATTTTTTTCTTTTTGTTTTTTGTTTTTTTTTTTAATTTGTTGAGTGGTAATTAATAATTATTGGTACTATATAAATATATATATAAAATATATATTTGGTGTAATTTATTGGAATTGCTTAGAATCCTTAATTTGGTAATTTTGTAAATTCGTGGCTGGTCATGTTTGTTGGAATTGGAACCAATCGTACTTTGTATAATAGTAAGGAGGTTAAGTCATGGTTAAGGTGCAAAAGAAAAAAGAAATTTATG

mRNA sequence

TTATTTCCTTTCAATCCAAGCCCTCCATCTCCACCACATAATCCTTTAGCCTTTCTTTAGGTTTCAATTTACCACAAAAAAAACAATTCCTCCTATCCCCCCAAAAACCACACAGAACTCACAAATCCCTCACCGGACCCATCATCAATGGCCGCTCTTCACCAAACCACCGCCTCTCTTCAGGCCAAGCTCCTTCCAACCGCTCGAATCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCTCGCGGACTCCGCCTCGTCCAGCACCGCTCTCACGGCGGCGCAAGAATGTCGGCCACAGCCGCCGGAAGCTACGCTGCAGCACTAGCCGAAGTGGCAGCGTCGAACAACACACTTGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTTGCGGATCAACGGGTGTTCGATTTCTTCGCGAATCCTACGATTAGCGTGGAGAAGAAACAAGCAGTGGTGGATGAAATGGCTTCTTCGTCATCTCTACAGCCGCATTCAGCAAATTTCTTGAAGATCTTGGTGGATGCGAAGAGAATCGACATCCTGAAGGAGATAGTTACGGAGTTTGAATTGGTGTATAACAAGATAACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAATTGGAGCAGCAACATTTGGCGCAAATCGCGAAACAGGTGCAGAAATTGAGTGGCGCGAAGAATGTGAGGATAAAGACGCAGATTGATCCAAGTTTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCCAAACTCATTGATTTGAGTGTTAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGAAATTGAATTGCAAATGCATTTTGTGATATTTTTTTCTTTTTGTTTTTTGTTTTTTTTTTTAATTTGTTGAGTGGTAATTAATAATTATTGGTACTATATAAATATATATATAAAATATATATTTGGTGTAATTTATTGGAATTGCTTAGAATCCTTAATTTGGTAATTTTGTAAATTCGTGGCTGGTCATGTTTGTTGGAATTGGAACCAATCGTACTTTGTATAATAGTAAGGAGGTTAAGTCATGGTTAAGGTGCAAAAGAAAAAAGAAATTTATG

Coding sequence (CDS)

ATGGCCGCTCTTCACCAAACCACCGCCTCTCTTCAGGCCAAGCTCCTTCCAACCGCTCGAATCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCTCGCGGACTCCGCCTCGTCCAGCACCGCTCTCACGGCGGCGCAAGAATGTCGGCCACAGCCGCCGGAAGCTACGCTGCAGCACTAGCCGAAGTGGCAGCGTCGAACAACACACTTGACGCCACAAGCAGCGACGTGGAGAAGATCGAGAGCGTGTTTGCGGATCAACGGGTGTTCGATTTCTTCGCGAATCCTACGATTAGCGTGGAGAAGAAACAAGCAGTGGTGGATGAAATGGCTTCTTCGTCATCTCTACAGCCGCATTCAGCAAATTTCTTGAAGATCTTGGTGGATGCGAAGAGAATCGACATCCTGAAGGAGATAGTTACGGAGTTTGAATTGGTGTATAACAAGATAACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAATTGGAGCAGCAACATTTGGCGCAAATCGCGAAACAGGTGCAGAAATTGAGTGGCGCGAAGAATGTGAGGATAAAGACGCAGATTGATCCAAGTTTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCCAAACTCATTGATTTGAGTGTTAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA

Protein sequence

MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV*

Homology

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BLAST of CSPI06G02540 vs. ExPASy Swiss-Prot
Match: Q9SSS9 (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATPD PE=1 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.1e-69
Identity = 150/240 (62.50%), Postives = 193/240 (80.42%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTA-RISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAG 60
           MA+L QT  SLQ+KL P++ +I+R+ P+      TFP   +R+    +  GARMSATAA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLR----KTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSS 120
           SYA ALA+VA  N+T++ T +D+EK+E VF+D +V +FFANPTI+VEKK+ V+D++  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAK 180
           SLQ H++NFL +LVDA RI+I+ EIV EFELVYNK+T+T+LA V SVV+LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

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BLAST of CSPI06G02540 vs. ExPASy Swiss-Prot
Match: P32980 (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.3e-67
Identity = 146/248 (58.87%), Postives = 190/248 (76.61%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSA--TFPSRGLRLVQHRSH------GGAR 60
           MAAL QT  + Q++  P  +I       LSFS     P   ++L  +R+        G++
Sbjct: 1   MAALQQTPITFQSRSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRTSRRGGGAAGSK 60

Query: 61  MSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVV 120
           M A+AAGSYA ALA++A SN TL+ T++D+EKIE +  D+ VF+FF +P +  EKK+ +V
Sbjct: 61  MVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELV 120

Query: 121 DEMASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQ 180
           DE+ SSSS+QPH ANFL ILVD KR++++KEIV EFE VYN +T+TELAVV+SVV+LE Q
Sbjct: 121 DEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQ 180

Query: 181 HLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLD 240
           HLAQIAK VQ+L+G+KNVRIKT ID SLVAGFT+R+GNSGSKLID+SVKKQLE+IAAQL+
Sbjct: 181 HLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVKKQLEDIAAQLE 240

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BLAST of CSPI06G02540 vs. ExPASy Swiss-Prot
Match: Q02758 (ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.5e-66
Identity = 147/252 (58.33%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLP--TARISRTTPVNLSFSATFPSRGLRL-------VQHRSHG-- 60
           MA+L  TTASL +K +P  T  ++R   +NLS S+TF S  L+L          RS G  
Sbjct: 1   MASLQHTTASLHSKHIPKTTNILTRKPILNLS-SSTFYSPKLKLKLKLPLTKTRRSTGGA 60

Query: 61  -GARMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKK 120
            GARMS+ AAGSYAAALA++A SNNTLDA ++D +KIE +F+D +VFD+F++P +    K
Sbjct: 61  LGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTK 120

Query: 121 QAVVDEMASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQ 180
           + ++ E A++S  QPH+ NFL +L+D+KRID++ +I+ EFE VYN +T+TEL VV+SVV+
Sbjct: 121 RQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVK 180

Query: 181 LEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA 240
           LE  HLAQIAKQVQKL+GAK VR KT +DPSLVAGFTVR+GN+GSK ID+SVK++LEEIA
Sbjct: 181 LESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIA 240

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BLAST of CSPI06G02540 vs. ExPASy Swiss-Prot
Match: P11402 (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=1 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-61
Identity = 137/249 (55.02%), Postives = 187/249 (75.10%), Query Frame = 0


Query: 3   ALHQTTASLQAKLLPTARISRTTPVNLSFS---ATFPSRGLRL-----VQHRSHGGA--- 62
           AL   T +  A L  ++  S   P +LSFS   ATF    L++     +  +  GGA   
Sbjct: 9   ALQSRTTTAVAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGT 68

Query: 63  RMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAV 122
           RM  + A  YA+ALA+VA    TL+AT+SDVEK+  +F+++ V+ FFANP IS++ K++V
Sbjct: 69  RMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSV 128

Query: 123 VDEMASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQ 182
           +DE+ ++S LQPH+ANF+ IL+D++RI+++KEI+ EFE V+NKIT TE+AVV+SVV+LE 
Sbjct: 129 LDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLEN 188

Query: 183 QHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQL 241
            HLAQIAK VQK++GAKNVRIKT IDPSLVAGFT+R+GN GSKL+D+SVKKQLEEIAAQL
Sbjct: 189 DHLAQIAKGVQKITGAKNVRIKTVIDPSLVAGFTIRYGNEGSKLVDMSVKKQLEEIAAQL 248

[Close]

BLAST of CSPI06G02540 vs. ExPASy Swiss-Prot
Match: Q07300 (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.3e-51
Identity = 122/247 (49.39%), Postives = 166/247 (67.21%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATF--PSRG---LRLVQHRSHGG--ARM 60
           MAAL   + +L+      A  S         SA+F   +RG   LRL   R  G      
Sbjct: 1   MAALRLASFTLRPAAAAAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPR 60

Query: 61  SATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVD 120
           +  AA SYA+AL+EVA  N TL+ T SD+EK++ +FAD+ V +FF NPT+  E+K A++D
Sbjct: 61  AEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALID 120

Query: 121 EMASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQH 180
           E+A S  LQPH  NF+ ++VD  R  IL EIV EFE ++N +T TE+A V+SVVQLE Q 
Sbjct: 121 EIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQD 180

Query: 181 LAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDL 240
           LAQIA+ VQK++GAKNVR+KTQ+DP L+AGFTV++G  GS LID+SV+KQ+EEI ++ +L
Sbjct: 181 LAQIAQHVQKMTGAKNVRLKTQLDPELIAGFTVQYGRDGSSLIDMSVRKQIEEITSEFEL 240

[Close]

BLAST of CSPI06G02540 vs. ExPASy TrEMBL
Match: A0A0A0K7Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016970 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.8e-118
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. ExPASy TrEMBL
Match: A0A5A7T0I4 (ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00020 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.3e-114
Identity = 233/240 (97.08%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQT ASLQAKLLPTARISRTTPVNLSFSATFPSRGLRL QHRSHGGARMSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD +V DFF+NPTISVEKKQAVVDE+ASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. ExPASy TrEMBL
Match: A0A1S3CIB5 (ATP synthase subunit delta, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501306 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.3e-114
Identity = 233/240 (97.08%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQT ASLQAKLLPTARISRTTPVNLSFSATFPSRGLRL QHRSHGGARMSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD +V DFF+NPTISVEKKQAVVDE+ASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. ExPASy TrEMBL
Match: A0A6J1I8U4 (ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111472044 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.8e-105
Identity = 217/240 (90.42%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAA HQT ASLQAKLLPT RISRTTP NLSFSATFPS  LRL QHRSHGGARMSA+AAGS
Sbjct: 1   MAAFHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQHRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFAD +VFD FANPTIS+EKK A+VDE+A+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVDAKRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. ExPASy TrEMBL
Match: A0A6J1EC71 (ATP synthase subunit delta, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432727 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104
Identity = 217/240 (90.42%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQT ASLQAKLLPT RISRTTP NLSFSATF S  LRL QHRSHGGARMSA+AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFAD +VFD FANPTIS+EKK A+VDE+A+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVDAKRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. NCBI nr
Match: XP_004138373.1 (ATP synthase subunit delta, chloroplastic [Cucumis sativus] >KGN45880.1 hypothetical protein Csa_004890 [Cucumis sativus])

HSP 1 Score: 434.1 bits (1115), Expect = 7.8e-118
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS
Sbjct: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. NCBI nr
Match: XP_008463069.1 (PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis melo] >KAA0034975.1 ATP synthase subunit delta [Cucumis melo var. makuwa] >TYK02317.1 ATP synthase subunit delta [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 9.0e-114
Identity = 233/240 (97.08%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQT ASLQAKLLPTARISRTTPVNLSFSATFPSRGLRL QHRSHGGARMSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD +V DFF+NPTISVEKKQAVVDE+ASSSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. NCBI nr
Match: XP_038884002.1 (ATP synthase subunit delta, chloroplastic [Benincasa hispida])

HSP 1 Score: 409.1 bits (1050), Expect = 2.7e-110
Identity = 226/240 (94.17%), Postives = 231/240 (96.25%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQT ASLQAKLLPT RISRTTPVNLSFSATFPSR LRL  HRSHGGA+MSATAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPVNLSFSATFPSRSLRLGHHRSHGGAKMSATAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATSSDVEKIESVFAD +VFDFFANPTI VEKK  VVDE+A+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIGVEKKLEVVDEIATSSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQ+DLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQIDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. NCBI nr
Match: XP_023534996.1 (ATP synthase subunit delta, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 218/240 (90.83%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAALHQT ASLQAKLLPT RISRTTP NLSFSATFPS  LRL Q+RSHGGARMSA+AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQYRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFAD +VFDFFANPTIS+EKK A+VDE+A+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDFFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVDAKRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVALEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. NCBI nr
Match: XP_022973506.1 (ATP synthase subunit delta, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 391.3 bits (1004), Expect = 5.8e-105
Identity = 217/240 (90.42%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAGS 60
           MAA HQT ASLQAKLLPT RISRTTP NLSFSATFPS  LRL QHRSHGGARMSA+AAGS
Sbjct: 1   MAAFHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQHRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSSS 120
           YAAALAEVAASNNTLDATS DVEKIESVFAD +VFD FANPTIS+EKK A+VDE+A+SSS
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180
           L PH+ANFLKILVDAKRIDI+KEIVTEFE VYNKITNTELAVVSSVV LEQQHLAQIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQLAV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of CSPI06G02540 vs. TAIR 10
Match: AT4G09650.1 (ATP synthase delta-subunit gene )

HSP 1 Score: 263.1 bits (671), Expect = 2.2e-70
Identity = 150/240 (62.50%), Postives = 193/240 (80.42%), Query Frame = 0


Query: 1   MAALHQTTASLQAKLLPTA-RISRTTPVNLSFSATFPSRGLRLVQHRSHGGARMSATAAG 60
           MA+L QT  SLQ+KL P++ +I+R+ P+      TFP   +R+    +  GARMSATAA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLPLR----KTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNNTLDATSSDVEKIESVFADQRVFDFFANPTISVEKKQAVVDEMASSS 120
           SYA ALA+VA  N+T++ T +D+EK+E VF+D +V +FFANPTI+VEKK+ V+D++  SS
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAK 180
           SLQ H++NFL +LVDA RI+I+ EIV EFELVYNK+T+T+LA V SVV+LE   LAQIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLA 240
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQLA
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQLA 233

The following BLAST results are available for this feature:

BLAST of CSPI06G02540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSS9	3.1e-69	62.50	ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATP...	[more]
P32980	1.3e-67	58.87	ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=...	[more]
Q02758	2.5e-66	58.33	ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV...	[more]
P11402	1.4e-61	55.02	ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=...	[more]
Q07300	1.3e-51	49.39	ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 ...	[more]

BLAST of CSPI06G02540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Z3	3.8e-118	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016970 PE=3 SV=1	[more]
A0A5A7T0I4	4.3e-114	97.08	ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CIB5	4.3e-114	97.08	ATP synthase subunit delta, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350130...	[more]
A0A6J1I8U4	2.8e-105	90.42	ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EC71	1.4e-104	90.42	ATP synthase subunit delta, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CSPI06G02540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138373.1	7.8e-118	100.00	ATP synthase subunit delta, chloroplastic [Cucumis sativus] >KGN45880.1 hypothet...	[more]
XP_008463069.1	9.0e-114	97.08	PREDICTED: ATP synthase subunit delta, chloroplastic [Cucumis melo] >KAA0034975....	[more]
XP_038884002.1	2.7e-110	94.17	ATP synthase subunit delta, chloroplastic [Benincasa hispida]	[more]
XP_023534996.1	1.2e-105	90.83	ATP synthase subunit delta, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022973506.1	5.8e-105	90.42	ATP synthase subunit delta, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of CSPI06G02540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09650.1	2.2e-70	62.50	ATP synthase delta-subunit gene	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PRINTS	PR00125	ATPASEDELTA	coord: 206..224 score: 35.66 coord: 188..203 score: 36.41 coord: 57..76 score: 39.12 coord: 137..151 score: 28.33 coord: 126..137 score: 40.62
IPR000711	ATPase, OSCP/delta subunit	TIGRFAM	TIGR01145	TIGR01145	coord: 58..231 e-value: 1.0E-36 score: 124.7
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 58..231 e-value: 8.4E-42 score: 143.2
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 47..239
IPR000711	ATPase, OSCP/delta subunit	HAMAP	MF_01416	ATP_synth_delta_bact	coord: 53..233 score: 18.075483
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	GENE3D	1.10.520.20		coord: 57..149 e-value: 1.6E-21 score: 78.7
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	SUPERFAMILY	47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 54..157
None	No IPR available	PANTHER	PTHR11910:SF18	BNACNNG66500D PROTEIN	coord: 47..239
IPR020781	ATPase, OSCP/delta subunit, conserved site	PROSITE	PS00389	ATPASE_DELTA	coord: 190..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02540.1	CSPI06G02540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0009409	response to cold
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0010319	stromule
cellular_component	GO:0016020	membrane
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism