CSPI06G02470 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02470
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Major pollen allergen Ole e 6-like
Location	Chr6: 1876156 .. 1876557 (+)
RNA-Seq Expression	CSPI06G02470
Synteny	CSPI06G02470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCAAACATGACCGCTAAAAGGGATGCTGAGATTGAGATCAAATCTAATATTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCATGACAAAAGGCGGTGCTAATGAATTGTGTGATTCTATATGTGATAAAGATTGCATGAAAAAGGAAGTTGTTGGTATTGTCTTCAATCTCTCGAGAAATGTTTTTTTTTTTTTGTTATATCAAGACAATAGTTAA

mRNA sequence

ATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCAAACATGACCGCTAAAAGGGATGCTGAGATTGAGATCAAATCTAATATTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCATGACAAAAGGCGGTGCTAATGAATTGTGTGATTCTATATGTGATAAAGATTGCATGAAAAAGGAAGTTGTTGACAATAGTTAA

Coding sequence (CDS)

ATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCAAACATGACCGCTAAAAGGGATGCTGAGATTGAGATCAAATCTAATATTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCATGACAAAAGGCGGTGCTAATGAATTGTGTGATTCTATATGTGATAAAGATTGCATGAAAAAGGAAGTTGTTGACAATAGTTAA

Protein sequence

MTAERDAEIERKSNTLFNEISNLEPQYKSCVETCKKTCTTKGVANDLCDPNMTAKRDAEIEIKSNILFNEISNLEPQYKSCVETCKKTCMTKGGANELCDSICDKDCMKKEVVDNS*

Homology

[Close]

BLAST of CSPI06G02470 vs. ExPASy TrEMBL
Match: A0A5A7T3F9 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 51  NMTAKRDAEIEIKSNILFNEISNLEPQYKSCVETCKKTCMTKGGANELCDSICDKDCMKK 110
           +MTA+RD EIE++S +L +EISN+ PQ+KSCVETC K C+ K  AN  C S CDKDCMKK
Sbjct: 26  DMTAERDTEIEMRSKLLQSEISNVMPQFKSCVETCAKACIAKDSANTSCHSTCDKDCMKK 85

Query: 111 EVVD 115
           EVVD
Sbjct: 86  EVVD 89

[Close]

BLAST of CSPI06G02470 vs. ExPASy TrEMBL
Match: A0A5A7SXV7 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13030G00010 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 51  NMTAKRDAEIEIKSNILFNEISNLEPQYKSCVETCKKTCMTKGGANELCDSICDKDCMKK 110
           +MTA RD EIE++S +L +EIS++ PQ+KSCVETC+K C+ K GAN  C S CDKDCMKK
Sbjct: 26  DMTADRDTEIEMRSKLLQSEISSVMPQFKSCVETCEKACIAKDGANTSCHSTCDKDCMKK 85

Query: 111 EVV 114
           EVV
Sbjct: 86  EVV 88

[Close]

BLAST of CSPI06G02470 vs. NCBI nr
Match: KAA0036015.1 (major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-15
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 51  NMTAKRDAEIEIKSNILFNEISNLEPQYKSCVETCKKTCMTKGGANELCDSICDKDCMKK 110
           +MTA+RD EIE++S +L +EISN+ PQ+KSCVETC K C+ K  AN  C S CDKDCMKK
Sbjct: 26  DMTAERDTEIEMRSKLLQSEISNVMPQFKSCVETCAKACIAKDSANTSCHSTCDKDCMKK 85

Query: 111 EVVD 115
           EVVD
Sbjct: 86  EVVD 89

[Close]

BLAST of CSPI06G02470 vs. NCBI nr
Match: KAA0035393.1 (major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-15
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 51  NMTAKRDAEIEIKSNILFNEISNLEPQYKSCVETCKKTCMTKGGANELCDSICDKDCMKK 110
           +MTA RD EIE++S +L +EIS++ PQ+KSCVETC+K C+ K GAN  C S CDKDCMKK
Sbjct: 26  DMTADRDTEIEMRSKLLQSEISSVMPQFKSCVETCEKACIAKDGANTSCHSTCDKDCMKK 85

Query: 111 EVV 114
           EVV
Sbjct: 86  EVV 88

[Close]

BLAST of CSPI06G02470 vs. NCBI nr
Match: KAG6595587.1 (hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 7.4e-05
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 53  TAKRDAEIEIKSNILFNEISNLEPQYKSCVETCKKTCMTKGGANELCDSICDKDCMKKEV 112
           TA   AE+E +    F ++S +E + KSC  TC+K C+ KG  +E C   C+ DC KKEV
Sbjct: 23  TADSPAEMEARFKSFFGDLSGVEAKLKSCAATCEKECVAKGETSESCKPKCNTDCGKKEV 82

The following BLAST results are available for this feature:

BLAST of CSPI06G02470 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G02470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T3F9	1.0e-15	65.63	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7SXV7	3.8e-15	65.08	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of CSPI06G02470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036015.1	2.1e-15	65.63	major pollen allergen Ole e 6-like [Cucumis melo var. makuwa]	[more]
KAA0035393.1	7.9e-15	65.08	major pollen allergen Ole e 6-like [Cucumis melo var. makuwa]	[more]
KAG6595587.1	7.4e-05	43.33	hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G02470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 75..116 e-value: 1.2E-8 score: 36.3
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 75..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02470.1	CSPI06G02470.1	mRNA